Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00092 * 2 1 4 4 C 1.34776 * 119.99606 * 180.02562 * 2 1 3 5 5 O 1.21598 * 120.00156 * 354.23803 * 4 2 1 6 6 N 1.34780 * 119.99875 * 174.24719 * 4 2 1 7 7 N 1.40092 * 120.00208 * 25.09377 * 6 4 2 8 8 C 1.29797 * 120.00393 * 180.02562 * 7 6 4 9 9 C 1.47376 * 120.00213 * 179.97438 * 8 7 6 10 10 C 1.39803 * 120.08222 * 179.97438 * 9 8 7 11 11 C 1.37721 * 119.91056 * 180.02562 * 10 9 8 12 12 C 1.39075 * 120.08345 * 0.02586 * 11 10 9 13 13 O 1.35662 * 119.91008 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00009 * 5.86384 * 13 12 11 15 15 H 1.07994 * 119.99849 * 354.89528 * 14 13 12 16 16 C 1.38634 * 119.99872 * 174.90181 * 14 13 12 17 17 N 1.31563 * 120.00078 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00393 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47072 * 89.99683 * 18 16 14 20 20 H 1.48502 * 109.47412 * 210.00394 * 18 16 14 21 21 H 1.48503 * 109.46955 * 330.00393 * 18 16 14 22 22 C 1.39074 * 120.17791 * 0.23450 * 12 11 10 23 23 C 1.37717 * 120.08281 * 359.47978 * 22 12 11 24 24 H 1.08997 * 109.47319 * 269.99964 * 1 2 3 25 25 H 1.09009 * 109.46952 * 29.99887 * 1 2 3 26 26 H 1.08998 * 109.47542 * 149.99871 * 1 2 3 27 27 H 1.09000 * 109.46723 * 202.97809 * 3 2 1 28 28 H 1.08994 * 109.47464 * 322.97557 * 3 2 1 29 29 H 1.08996 * 109.47171 * 82.98046 * 3 2 1 30 30 H 0.97003 * 119.99712 * 205.09823 * 6 4 2 31 31 H 1.08001 * 119.99325 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.04924 * 0.02562 * 10 9 8 33 33 H 1.07993 * 119.96111 * 179.97438 * 11 10 9 34 34 H 0.97001 * 120.00662 * 179.97438 * 17 16 14 35 35 H 1.08001 * 119.95832 * 179.74647 * 22 12 11 36 36 H 1.08002 * 120.04523 * 180.23152 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5354 -2.2177 0.1047 6 7 3.4815 -1.1702 -0.1175 7 7 4.2217 -0.0488 0.2790 8 6 5.5147 -0.0514 0.1659 9 6 6.2933 1.1285 0.5826 10 6 7.6861 1.1273 0.4620 11 6 8.4102 2.2316 0.8529 12 6 7.7577 3.3467 1.3676 13 8 8.4745 4.4324 1.7521 14 6 9.7981 4.4135 1.4971 15 1 10.2557 3.5273 1.0829 16 6 10.5719 5.5318 1.7667 17 7 11.8638 5.5133 1.5183 18 14 9.7805 7.0649 2.4826 19 1 9.8125 6.9921 3.9654 20 1 10.5280 8.2655 2.0296 21 1 8.3717 7.1559 2.0218 22 6 6.3727 3.3497 1.4942 23 6 5.6411 2.2515 1.1000 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 3.1985 1.1102 -0.4012 28 1 1.6687 1.9936 -0.6188 29 1 2.2704 1.6461 1.0199 30 1 3.9353 -1.9488 -0.4764 31 1 6.0200 -0.9183 -0.2336 32 1 8.1936 0.2615 0.0628 33 1 9.4862 2.2314 0.7605 34 1 12.4052 6.2958 1.7065 35 1 5.8699 4.2160 1.8981 36 1 4.5653 2.2559 1.1951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745601662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 38.625560 kcal Electronic energy + Delta-G solvation = -20287.063219 eV Core-core repulsion = 16967.579464 eV Total energy + Delta-G solvation = -3319.483755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23046 -39.35647 -37.45288 -36.16796 -35.50745 -32.70948 -32.10710 -30.53037 -28.81463 -28.01111 -25.96419 -25.47950 -22.97469 -22.27465 -20.49984 -20.33837 -18.23095 -17.66681 -17.44410 -16.99246 -16.31469 -15.51709 -15.24726 -14.84136 -14.22024 -14.10406 -13.96833 -13.78275 -13.69194 -13.06737 -12.88209 -12.71128 -12.48767 -12.41075 -12.37647 -12.02513 -11.46609 -11.40156 -10.96698 -10.83271 -10.49088 -10.29408 -9.74550 -9.56241 -9.34429 -8.96866 -8.62481 -8.47642 -7.29775 -6.60553 -4.25594 1.18720 2.01151 2.36457 2.60938 2.97403 3.13421 3.15695 3.28846 3.42743 4.08684 4.38505 4.63519 4.78717 4.91322 4.94095 5.21867 5.24829 5.32851 5.43373 5.51907 5.59730 5.65102 5.75551 5.94460 6.11039 6.19861 6.35521 6.36255 6.60561 6.67402 6.89356 6.96272 7.07284 7.32019 7.39405 7.60852 7.83241 7.92314 8.47166 8.73049 9.32719 10.45776 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039306 B = 0.003154 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.197130 B = 8876.383441 C = 9514.262272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.619 5.619 3 C 0.067 3.933 4 C 0.734 3.266 5 O -0.589 6.589 6 N -0.601 5.601 7 N -0.276 5.276 8 C 0.146 3.854 9 C -0.165 4.165 10 C -0.034 4.034 11 C -0.228 4.228 12 C 0.176 3.824 13 O -0.204 6.204 14 C -0.391 4.391 15 H 0.111 0.889 16 C 0.066 3.934 17 N -0.869 5.869 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.258 1.258 22 C -0.200 4.200 23 C -0.032 4.032 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.397 0.603 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 -6.652 -3.746 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.356 5.356 3 C -0.075 4.075 4 C 0.436 3.564 5 O -0.464 6.464 6 N -0.348 5.348 7 N -0.087 5.087 8 C -0.061 4.061 9 C -0.169 4.169 10 C -0.055 4.055 11 C -0.247 4.247 12 C 0.120 3.880 13 O -0.107 6.107 14 C -0.466 4.466 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.505 5.505 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.181 1.181 22 C -0.220 4.220 23 C -0.052 4.052 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.237 0.763 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.117 -6.378 -3.268 16.730 hybrid contribution 0.842 -0.187 -0.145 0.875 sum -14.275 -6.564 -3.413 16.079 Atomic orbital electron populations 1.21559 0.78074 1.02804 1.01775 1.46893 1.06748 1.05800 1.76145 1.22617 0.99446 0.83517 1.01952 1.15453 0.79955 0.83878 0.77120 1.90957 1.66787 1.31226 1.57461 1.46116 1.04890 1.15711 1.68036 1.74810 1.08013 1.07209 1.18661 1.24471 0.90281 0.97181 0.94118 1.17833 0.92304 0.93826 1.12900 1.20855 0.92025 0.97081 0.95545 1.21180 1.01343 0.94119 1.08091 1.19343 0.90894 0.86921 0.90796 1.83543 1.22269 1.36140 1.68725 1.20845 0.78625 1.03206 1.43964 0.87198 1.24522 0.94721 0.98614 0.96053 1.69637 1.04608 1.31469 1.44792 0.86163 0.80346 0.80661 0.79713 1.19668 1.20604 1.18144 1.20179 0.91026 1.00479 1.10274 1.20849 0.98984 0.91210 0.94205 0.92964 0.91140 0.90804 0.86345 0.92900 0.92759 0.76269 0.87093 0.86539 0.84439 0.90696 0.86089 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 10.44 59.85 0.62 1.59 16 2 N -0.62 -7.56 3.27 -195.34 -0.64 -8.20 16 3 C 0.07 0.72 9.35 59.85 0.56 1.28 16 4 C 0.73 10.57 8.41 -86.92 -0.73 9.84 16 5 O -0.59 -10.14 16.84 5.28 0.09 -10.05 16 6 N -0.60 -7.53 6.18 27.64 0.17 -7.36 16 7 N -0.28 -3.45 6.08 32.14 0.20 -3.25 16 8 C 0.15 1.73 10.74 -14.69 -0.16 1.57 16 9 C -0.16 -2.35 5.87 -105.01 -0.62 -2.97 16 10 C -0.03 -0.52 9.78 -39.19 -0.38 -0.90 16 11 C -0.23 -4.28 9.15 -39.46 -0.36 -4.64 16 12 C 0.18 3.61 6.65 -38.96 -0.26 3.35 16 13 O -0.20 -4.92 8.58 0.37 0.00 -4.92 16 14 C -0.39 -10.16 9.94 30.88 0.31 -9.85 16 15 H 0.11 2.89 5.42 -52.49 -0.28 2.60 16 16 C 0.07 1.73 5.49 -17.52 -0.10 1.63 16 17 N -0.87 -23.57 13.96 55.48 0.77 -22.79 16 18 Si 0.91 20.21 28.62 -169.99 -4.86 15.35 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.20 -3.50 9.97 -39.46 -0.39 -3.89 16 23 C -0.03 -0.48 9.57 -39.19 -0.37 -0.86 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 7.96 -51.92 -0.41 0.08 16 26 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 27 H 0.12 1.41 4.61 -104.07 -0.48 0.93 16 28 H 0.05 0.47 7.99 -51.93 -0.42 0.05 16 29 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.40 4.19 8.76 -182.60 -1.60 2.59 16 31 H 0.11 1.02 8.02 -52.49 -0.42 0.60 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 2.72 5.62 -52.49 -0.30 2.42 16 34 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.12 1.62 7.14 -52.49 -0.37 1.24 16 LS Contribution 313.89 15.07 4.73 4.73 Total: -1.00 -29.62 313.89 -6.92 -36.54 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.50 Total: 3.79 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.88 Total: -3.84 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.50 Total: -41.60 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.86 Total: 15.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.62 -6.92 -36.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745601662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.168 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds