Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00092 * 2 1 4 4 C 1.34776 * 119.99606 * 180.02562 * 2 1 3 5 5 O 1.21598 * 120.00156 * 354.23803 * 4 2 1 6 6 N 1.34780 * 119.99875 * 174.24719 * 4 2 1 7 7 N 1.40092 * 120.00208 * 25.09377 * 6 4 2 8 8 C 1.29797 * 120.00393 * 180.02562 * 7 6 4 9 9 C 1.47376 * 120.00213 * 179.97438 * 8 7 6 10 10 C 1.39803 * 120.08222 * 179.97438 * 9 8 7 11 11 C 1.37721 * 119.91056 * 180.02562 * 10 9 8 12 12 C 1.39075 * 120.08345 * 0.02586 * 11 10 9 13 13 O 1.35662 * 119.91008 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00009 * 5.86384 * 13 12 11 15 15 H 1.07994 * 119.99849 * 354.89528 * 14 13 12 16 16 C 1.38634 * 119.99872 * 174.90181 * 14 13 12 17 17 N 1.31563 * 120.00078 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00393 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47072 * 89.99683 * 18 16 14 20 20 H 1.48502 * 109.47412 * 210.00394 * 18 16 14 21 21 H 1.48503 * 109.46955 * 330.00393 * 18 16 14 22 22 C 1.39074 * 120.17791 * 0.23450 * 12 11 10 23 23 C 1.37717 * 120.08281 * 359.47978 * 22 12 11 24 24 H 1.08997 * 109.47319 * 269.99964 * 1 2 3 25 25 H 1.09009 * 109.46952 * 29.99887 * 1 2 3 26 26 H 1.08998 * 109.47542 * 149.99871 * 1 2 3 27 27 H 1.09000 * 109.46723 * 202.97809 * 3 2 1 28 28 H 1.08994 * 109.47464 * 322.97557 * 3 2 1 29 29 H 1.08996 * 109.47171 * 82.98046 * 3 2 1 30 30 H 0.97003 * 119.99712 * 205.09823 * 6 4 2 31 31 H 1.08001 * 119.99325 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.04924 * 0.02562 * 10 9 8 33 33 H 1.07993 * 119.96111 * 179.97438 * 11 10 9 34 34 H 0.97001 * 120.00662 * 179.97438 * 17 16 14 35 35 H 1.08001 * 119.95832 * 179.74647 * 22 12 11 36 36 H 1.08002 * 120.04523 * 180.23152 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5354 -2.2177 0.1047 6 7 3.4815 -1.1702 -0.1175 7 7 4.2217 -0.0488 0.2790 8 6 5.5147 -0.0514 0.1659 9 6 6.2933 1.1285 0.5826 10 6 7.6861 1.1273 0.4620 11 6 8.4102 2.2316 0.8529 12 6 7.7577 3.3467 1.3676 13 8 8.4745 4.4324 1.7521 14 6 9.7981 4.4135 1.4971 15 1 10.2557 3.5273 1.0829 16 6 10.5719 5.5318 1.7667 17 7 11.8638 5.5133 1.5183 18 14 9.7805 7.0649 2.4826 19 1 9.8125 6.9921 3.9654 20 1 10.5280 8.2655 2.0296 21 1 8.3717 7.1559 2.0218 22 6 6.3727 3.3497 1.4942 23 6 5.6411 2.2515 1.1000 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 3.1985 1.1102 -0.4012 28 1 1.6687 1.9936 -0.6188 29 1 2.2704 1.6461 1.0199 30 1 3.9353 -1.9488 -0.4764 31 1 6.0200 -0.9183 -0.2336 32 1 8.1936 0.2615 0.0628 33 1 9.4862 2.2314 0.7605 34 1 12.4052 6.2958 1.7065 35 1 5.8699 4.2160 1.8981 36 1 4.5653 2.2559 1.1951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745601662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 19.581858 kcal Electronic energy + Delta-G solvation = -20287.889016 eV Core-core repulsion = 16967.579464 eV Total energy + Delta-G solvation = -3320.309552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28639 -40.85019 -38.79089 -37.41551 -36.48746 -34.49433 -33.33184 -31.90027 -30.12054 -28.84542 -27.46093 -26.64931 -24.24896 -23.66311 -21.65088 -21.47845 -19.87645 -19.16345 -18.45097 -18.27108 -17.34154 -16.65320 -16.58074 -16.21252 -15.72722 -15.56067 -15.39376 -14.90993 -14.70857 -14.35422 -14.15729 -14.07757 -14.00063 -13.50010 -13.32460 -13.03877 -12.88408 -12.71513 -12.52231 -12.32759 -11.94021 -11.64144 -11.26873 -10.95537 -10.68082 -10.32441 -9.81684 -9.64665 -8.67162 -8.49243 -6.20720 -0.00884 0.63834 1.30603 1.35824 1.37904 1.48351 1.54573 1.91905 2.29408 2.45484 2.83404 3.06907 3.22055 3.80231 4.01324 4.17675 4.22725 4.40758 4.49675 4.55584 4.58074 4.61891 4.79520 4.88214 4.89587 4.99329 5.24838 5.27904 5.40532 5.45787 5.59108 5.68810 5.74009 5.81841 5.89154 6.20110 6.30246 6.85052 6.90480 7.44548 7.57766 8.61471 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039306 B = 0.003154 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.197130 B = 8876.383441 C = 9514.262272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.620 5.620 3 C 0.066 3.934 4 C 0.725 3.275 5 O -0.623 6.623 6 N -0.594 5.594 7 N -0.271 5.271 8 C 0.146 3.854 9 C -0.136 4.136 10 C -0.028 4.028 11 C -0.242 4.242 12 C 0.139 3.861 13 O -0.238 6.238 14 C -0.398 4.398 15 H 0.089 0.911 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.198 4.198 23 C -0.029 4.029 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.407 0.593 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.117 0.883 34 H 0.285 0.715 35 H 0.131 0.869 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.839 -7.766 -4.269 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.355 5.355 3 C -0.076 4.076 4 C 0.426 3.574 5 O -0.502 6.502 6 N -0.341 5.341 7 N -0.081 5.081 8 C -0.062 4.062 9 C -0.139 4.139 10 C -0.048 4.048 11 C -0.261 4.261 12 C 0.088 3.912 13 O -0.144 6.144 14 C -0.474 4.474 15 H 0.106 0.894 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.196 1.196 21 H -0.183 1.183 22 C -0.217 4.217 23 C -0.049 4.049 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.249 0.751 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.097 -7.510 -3.804 19.959 hybrid contribution 1.345 -0.233 -0.111 1.369 sum -16.752 -7.743 -3.915 18.866 Atomic orbital electron populations 1.21741 0.76703 1.03824 1.02372 1.47107 1.07817 1.05616 1.74978 1.22664 0.99172 0.83249 1.02516 1.15697 0.80385 0.84078 0.77207 1.90937 1.67491 1.32602 1.59140 1.46019 1.04495 1.15998 1.67629 1.74819 1.08476 1.07247 1.17538 1.24455 0.90198 0.97247 0.94269 1.18115 0.92193 0.94114 1.09496 1.21165 0.92427 0.96898 0.94339 1.21228 1.00792 0.95212 1.08866 1.19900 0.92140 0.86873 0.92284 1.83500 1.21085 1.38004 1.71844 1.20759 0.79947 1.02704 1.44021 0.89354 1.25257 0.95173 1.01375 0.96865 1.69721 1.05817 1.32515 1.47912 0.85264 0.79215 0.77596 0.79009 1.19244 1.19570 1.18324 1.20435 0.89802 1.01781 1.09719 1.21183 1.00174 0.90464 0.93114 0.92582 0.88174 0.91771 0.87270 0.90573 0.92508 0.75114 0.83394 0.82773 0.86546 0.90542 0.85118 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.44 127.77 1.33 2.89 16 2 N -0.62 -13.10 3.27 -890.18 -2.91 -16.01 16 3 C 0.07 1.14 9.35 127.77 1.19 2.34 16 4 C 0.72 18.88 8.41 179.05 1.51 20.38 16 5 O -0.62 -20.38 16.84 -4.02 -0.07 -20.45 16 6 N -0.59 -12.69 6.18 -184.73 -1.14 -13.83 16 7 N -0.27 -5.52 6.08 -52.22 -0.32 -5.84 16 8 C 0.15 2.71 10.74 87.40 0.94 3.64 16 9 C -0.14 -3.33 5.87 -20.12 -0.12 -3.45 16 10 C -0.03 -0.77 9.78 22.53 0.22 -0.55 16 11 C -0.24 -9.11 9.15 22.35 0.20 -8.91 16 12 C 0.14 5.79 6.65 22.67 0.15 5.95 16 13 O -0.24 -11.93 8.58 -21.59 -0.19 -12.11 16 14 C -0.40 -21.88 9.94 67.91 0.68 -21.20 16 15 H 0.09 5.02 5.42 -2.91 -0.02 5.01 16 16 C 0.01 0.68 5.49 84.83 0.47 1.15 16 17 N -0.92 -52.54 13.96 21.61 0.30 -52.24 16 18 Si 0.97 43.07 28.62 68.60 1.96 45.03 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 C -0.20 -6.63 9.97 22.35 0.22 -6.41 16 23 C -0.03 -0.78 9.57 22.52 0.22 -0.57 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 1.01 7.96 -2.38 -0.02 0.99 16 26 H 0.06 1.17 7.51 -2.39 -0.02 1.16 16 27 H 0.11 2.11 4.61 -70.59 -0.33 1.78 16 28 H 0.08 0.99 7.99 -2.39 -0.02 0.97 16 29 H 0.06 0.97 8.07 -2.39 -0.02 0.96 16 30 H 0.41 7.08 8.76 -213.32 -1.87 5.21 16 31 H 0.15 1.80 8.02 -2.91 -0.02 1.78 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.12 4.88 5.62 -2.91 -0.02 4.86 16 34 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.15 3.23 7.14 -2.91 -0.02 3.21 16 Total: -1.00 -67.94 313.89 3.59 -64.35 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -1.06 Total: 15.83 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.01 Total: -4.73 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -4.07 Total: -87.93 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.25 Total: -32.56 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.96 Total: 45.03 kcal Total: -67.94 3.59 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745601662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.936 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds