Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47523 * 2 1 4 4 C 1.36832 * 119.68960 * 89.99436 * 3 2 1 5 5 C 1.35025 * 119.68067 * 179.74653 * 4 3 2 6 6 C 1.41573 * 119.11940 * 0.26256 * 5 4 3 7 7 O 1.21770 * 120.30896 * 179.97438 * 6 5 4 8 8 N 1.34841 * 119.38174 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.86846 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47003 * 90.00080 * 9 8 6 11 11 H 1.08996 * 109.47609 * 54.99917 * 10 9 8 12 12 C 1.47209 * 109.47073 * 294.99984 * 10 9 8 13 13 N 6.70210 * 131.96297 * 345.30567 * 2 1 3 14 14 C 1.52998 * 109.46792 * 175.00145 * 10 9 8 15 15 C 1.50705 * 109.46807 * 184.99663 * 14 10 9 16 16 H 1.07997 * 120.00274 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99906 * 179.97438 * 15 14 10 18 18 N 1.31517 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47215 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46872 * 119.99999 * 19 17 15 22 22 H 1.48500 * 109.47220 * 240.00387 * 19 17 15 23 23 C 1.34537 * 119.68759 * 270.28053 * 3 2 1 24 24 O 1.21585 * 119.53861 * 0.02562 * 23 3 2 25 25 H 1.08994 * 109.47603 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46811 * 300.00222 * 1 2 3 27 27 H 1.08997 * 109.47188 * 59.99801 * 1 2 3 28 28 H 1.09000 * 109.47540 * 239.99391 * 2 1 3 29 29 H 1.09007 * 109.47061 * 119.99659 * 2 1 3 30 30 H 1.08002 * 120.16188 * 0.03269 * 4 3 2 31 31 H 1.08002 * 120.44152 * 180.27713 * 5 4 3 32 32 H 1.08997 * 109.47000 * 210.00134 * 9 8 6 33 33 H 1.08994 * 109.46791 * 330.00109 * 9 8 6 34 34 H 1.08997 * 109.47150 * 304.99642 * 14 10 9 35 35 H 1.09001 * 109.47413 * 64.99926 * 14 10 9 36 36 H 0.96996 * 120.00214 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2442 2.0202 1.1887 5 6 2.6993 3.2915 1.1885 6 6 2.9287 3.9409 -0.0484 7 8 3.3385 5.0873 -0.0739 8 7 2.6893 3.2781 -1.1980 9 6 2.9235 3.9397 -2.4840 10 6 4.3632 3.6838 -2.9343 11 1 4.5516 2.6105 -2.9571 12 6 5.2938 4.3253 -1.9911 13 7 6.0113 4.8205 -1.2641 14 6 4.5715 4.2680 -4.3329 15 6 5.9496 3.9100 -4.8267 16 1 6.6106 3.3241 -4.2053 17 6 6.3662 4.3296 -6.0723 18 7 5.5611 5.0426 -6.8293 19 14 8.0741 3.8853 -6.6846 20 1 8.7771 3.0827 -5.6517 21 1 7.9608 3.0919 -7.9348 22 1 8.8420 5.1274 -6.9544 23 6 2.2351 2.0113 -1.1688 24 8 2.0225 1.4267 -2.2134 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0638 1.5087 2.1226 31 1 2.8860 3.8060 2.1195 32 1 2.2339 3.5417 -3.2283 33 1 2.7619 5.0121 -2.3755 34 1 3.8242 3.8585 -5.0127 35 1 4.4704 5.3525 -4.2925 36 1 5.8540 5.3375 -7.7057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755293398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = -13.006654 kcal Electronic energy + Delta-G solvation = -21516.416910 eV Core-core repulsion = 18194.694214 eV Total energy + Delta-G solvation = -3321.722696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34483 -39.07994 -37.69786 -36.30992 -35.14295 -33.75908 -32.91042 -31.48289 -30.10293 -27.54551 -25.06248 -24.51597 -23.07278 -22.58769 -21.77979 -19.29590 -17.95460 -17.06691 -16.97712 -16.55527 -16.29717 -15.46073 -15.07019 -14.67142 -14.54876 -14.43670 -13.78022 -13.66014 -13.53556 -13.11932 -12.96946 -12.54060 -12.39692 -12.02439 -11.65661 -11.62488 -11.53456 -11.32416 -11.04176 -10.85174 -10.82041 -10.54123 -10.31045 -10.14318 -9.79571 -9.42462 -9.11559 -8.69113 -8.42211 -6.06075 -4.08898 0.92163 1.87293 2.03917 2.98908 3.31515 3.39234 3.44153 3.48332 3.76195 3.80671 4.17695 4.35388 4.44116 4.65825 4.70040 4.83842 4.92490 5.08865 5.27090 5.32044 5.40095 5.45617 5.49472 5.59317 5.63577 5.74474 5.89940 5.99731 6.34166 6.36235 6.51596 7.24286 7.45087 7.54876 7.60568 7.88525 7.98912 8.25625 8.56605 8.94776 9.55989 11.05020 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.004795 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.439445 B = 5837.729742 C = 6423.704362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.538 5.538 4 C 0.166 3.834 5 C -0.292 4.292 6 C 0.538 3.462 7 O -0.499 6.499 8 N -0.554 5.554 9 C 0.116 3.884 10 C -0.002 4.002 11 H 0.103 0.897 12 C 0.233 3.767 13 N -0.455 5.455 14 C 0.035 3.965 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.691 3.309 24 O -0.530 6.530 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.030 0.970 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -11.615 16.309 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.260 5.260 4 C 0.043 3.957 5 C -0.319 4.319 6 C 0.333 3.667 7 O -0.372 6.372 8 N -0.298 5.298 9 C -0.006 4.006 10 C -0.025 4.025 11 H 0.121 0.879 12 C -0.085 4.085 13 N -0.131 5.131 14 C -0.004 4.004 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.394 3.606 24 O -0.402 6.402 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.191 0.809 31 H 0.185 0.815 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.057 -10.535 16.518 23.004 hybrid contribution 0.721 -0.372 -0.559 0.986 sum -11.335 -10.907 15.959 22.408 Atomic orbital electron populations 1.22171 0.94370 1.03272 1.03073 1.21884 0.95553 0.78728 1.05303 1.44953 1.60966 1.15575 1.04467 1.22240 0.90719 0.92969 0.89819 1.21962 1.14617 0.96174 0.99143 1.17409 0.78236 0.87139 0.83954 1.90947 1.42453 1.16762 1.87026 1.46707 1.59451 1.12729 1.10949 1.22051 0.97547 0.99291 0.81665 1.19521 0.87549 1.00534 0.94884 0.87920 1.28877 0.93817 0.93298 0.92472 1.80929 1.10754 1.09393 1.12033 1.19156 0.98474 0.96979 0.85783 1.21125 0.99309 1.34346 1.01440 0.92526 1.24939 0.97424 0.94853 0.96699 1.69947 1.35896 1.36467 1.10612 0.86518 0.84412 0.78298 0.78754 1.19735 1.20818 1.20935 1.15946 0.78951 0.81638 0.84064 1.91037 1.55127 1.64411 1.29656 0.90467 0.92166 0.91482 0.87831 0.88773 0.80904 0.81549 0.86636 0.87721 0.93912 0.95200 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.15 0.38 -0.53 16 2 C 0.11 0.66 6.05 -4.04 -0.02 0.63 16 3 N -0.54 -5.07 2.61 -121.53 -0.32 -5.39 16 4 C 0.17 1.21 10.38 -16.46 -0.17 1.04 16 5 C -0.29 -3.11 10.00 -39.45 -0.39 -3.51 16 6 C 0.54 8.47 6.78 -14.96 -0.10 8.37 16 7 O -0.50 -9.83 15.13 5.13 0.08 -9.76 16 8 N -0.55 -8.63 2.48 -124.03 -0.31 -8.94 16 9 C 0.12 1.99 4.67 -4.04 -0.02 1.97 16 10 C 0.00 -0.05 2.42 -93.40 -0.23 -0.28 16 11 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 12 C 0.23 5.33 11.78 -20.78 -0.24 5.09 16 13 N -0.45 -11.15 18.28 42.12 0.77 -10.38 16 14 C 0.03 0.85 4.42 -27.88 -0.12 0.72 16 15 C -0.52 -14.53 8.60 -34.44 -0.30 -14.83 16 16 H 0.06 1.57 7.59 -52.49 -0.40 1.18 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 C 0.69 9.59 8.12 -87.29 -0.71 8.88 16 24 O -0.53 -8.55 15.36 5.29 0.08 -8.47 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.79 7.38 -51.93 -0.38 0.41 16 29 H 0.09 0.27 8.03 -51.92 -0.42 -0.15 16 30 H 0.17 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.83 7.39 -51.93 -0.38 1.44 16 33 H 0.10 1.82 7.42 -51.93 -0.39 1.43 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 318.00 15.07 4.79 4.79 Total: -1.00 -36.17 318.00 -5.70 -41.87 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -4.48 Total: -4.49 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.03 Total: 9.24 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.88 Total: -50.05 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.16 Total: -18.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.17 -5.70 -41.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755293398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.863 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds