Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47523 * 2 1 4 4 C 1.36832 * 119.68960 * 89.99436 * 3 2 1 5 5 C 1.35025 * 119.68067 * 179.74653 * 4 3 2 6 6 C 1.41573 * 119.11940 * 0.26256 * 5 4 3 7 7 O 1.21770 * 120.30896 * 179.97438 * 6 5 4 8 8 N 1.34841 * 119.38174 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.86846 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47003 * 90.00080 * 9 8 6 11 11 H 1.08996 * 109.47609 * 54.99917 * 10 9 8 12 12 C 1.47209 * 109.47073 * 294.99984 * 10 9 8 13 13 N 6.70210 * 131.96297 * 345.30567 * 2 1 3 14 14 C 1.52998 * 109.46792 * 175.00145 * 10 9 8 15 15 C 1.50705 * 109.46807 * 184.99663 * 14 10 9 16 16 H 1.07997 * 120.00274 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99906 * 179.97438 * 15 14 10 18 18 N 1.31517 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47215 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46872 * 119.99999 * 19 17 15 22 22 H 1.48500 * 109.47220 * 240.00387 * 19 17 15 23 23 C 1.34537 * 119.68759 * 270.28053 * 3 2 1 24 24 O 1.21585 * 119.53861 * 0.02562 * 23 3 2 25 25 H 1.08994 * 109.47603 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46811 * 300.00222 * 1 2 3 27 27 H 1.08997 * 109.47188 * 59.99801 * 1 2 3 28 28 H 1.09000 * 109.47540 * 239.99391 * 2 1 3 29 29 H 1.09007 * 109.47061 * 119.99659 * 2 1 3 30 30 H 1.08002 * 120.16188 * 0.03269 * 4 3 2 31 31 H 1.08002 * 120.44152 * 180.27713 * 5 4 3 32 32 H 1.08997 * 109.47000 * 210.00134 * 9 8 6 33 33 H 1.08994 * 109.46791 * 330.00109 * 9 8 6 34 34 H 1.08997 * 109.47150 * 304.99642 * 14 10 9 35 35 H 1.09001 * 109.47413 * 64.99926 * 14 10 9 36 36 H 0.96996 * 120.00214 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2442 2.0202 1.1887 5 6 2.6993 3.2915 1.1885 6 6 2.9287 3.9409 -0.0484 7 8 3.3385 5.0873 -0.0739 8 7 2.6893 3.2781 -1.1980 9 6 2.9235 3.9397 -2.4840 10 6 4.3632 3.6838 -2.9343 11 1 4.5516 2.6105 -2.9571 12 6 5.2938 4.3253 -1.9911 13 7 6.0113 4.8205 -1.2641 14 6 4.5715 4.2680 -4.3329 15 6 5.9496 3.9100 -4.8267 16 1 6.6106 3.3241 -4.2053 17 6 6.3662 4.3296 -6.0723 18 7 5.5611 5.0426 -6.8293 19 14 8.0741 3.8853 -6.6846 20 1 8.7771 3.0827 -5.6517 21 1 7.9608 3.0919 -7.9348 22 1 8.8420 5.1274 -6.9544 23 6 2.2351 2.0113 -1.1688 24 8 2.0225 1.4267 -2.2134 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0638 1.5087 2.1226 31 1 2.8860 3.8060 2.1195 32 1 2.2339 3.5417 -3.2283 33 1 2.7619 5.0121 -2.3755 34 1 3.8242 3.8585 -5.0127 35 1 4.4704 5.3525 -4.2925 36 1 5.8540 5.3375 -7.7057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755293398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -36.809223 kcal Electronic energy + Delta-G solvation = -21517.449067 eV Core-core repulsion = 18194.694214 eV Total energy + Delta-G solvation = -3322.754853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.38888 -40.20840 -38.88389 -37.83810 -36.48750 -35.57896 -34.18382 -33.00164 -30.81214 -29.24301 -26.56175 -25.36790 -24.33120 -23.76499 -23.36137 -20.29591 -19.12827 -18.39809 -18.31393 -17.96672 -17.81818 -16.74980 -16.48941 -16.06331 -15.69016 -15.24934 -15.02015 -14.80833 -14.72023 -14.38238 -14.34488 -13.97110 -13.95146 -13.47777 -13.13770 -12.97587 -12.87149 -12.68990 -12.53657 -12.26085 -12.18689 -12.02125 -11.94184 -11.63167 -11.41144 -11.25890 -10.75676 -10.59837 -9.52674 -8.23462 -6.32872 0.12104 0.92384 0.95256 1.37226 1.39117 1.50555 1.87912 1.92667 2.01557 2.38722 2.48302 3.05998 3.13428 3.56755 3.78683 3.89741 4.02850 4.08623 4.22259 4.24428 4.35522 4.51373 4.58506 4.61322 4.68366 4.81896 4.95146 5.00720 5.32596 5.36356 5.37195 5.47896 5.51323 5.71933 6.11926 6.22091 6.52789 6.69495 6.79462 6.88968 7.35446 8.88066 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.004795 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.439445 B = 5837.729742 C = 6423.704362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.529 5.529 4 C 0.211 3.789 5 C -0.325 4.325 6 C 0.524 3.476 7 O -0.557 6.557 8 N -0.560 5.560 9 C 0.125 3.875 10 C 0.010 3.990 11 H 0.110 0.890 12 C 0.242 3.758 13 N -0.483 5.483 14 C 0.042 3.958 15 C -0.542 4.542 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.282 1.282 23 C 0.683 3.317 24 O -0.559 6.559 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.244 0.756 31 H 0.185 0.815 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.006 0.994 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -14.275 18.462 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.249 5.249 4 C 0.087 3.913 5 C -0.351 4.351 6 C 0.323 3.677 7 O -0.435 6.435 8 N -0.303 5.303 9 C 0.002 3.998 10 C -0.012 4.012 11 H 0.128 0.872 12 C -0.075 4.075 13 N -0.160 5.160 14 C 0.004 3.996 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.194 1.194 22 H -0.208 1.208 23 C 0.387 3.613 24 O -0.434 6.434 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.260 0.740 31 H 0.202 0.798 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.645 -13.248 18.701 26.175 hybrid contribution 0.810 0.353 -1.205 1.495 sum -11.835 -12.895 17.495 24.747 Atomic orbital electron populations 1.22155 0.93634 1.04361 1.02326 1.22295 0.96119 0.76634 1.06937 1.45274 1.59305 1.16582 1.03728 1.23133 0.85840 0.91496 0.90810 1.22004 1.17941 0.97909 0.97252 1.18324 0.77359 0.86833 0.85193 1.90913 1.45821 1.19159 1.87594 1.46746 1.59630 1.13632 1.10306 1.21739 0.95360 0.99326 0.83393 1.19403 0.89218 1.00186 0.92392 0.87195 1.29277 0.93373 0.92703 0.92179 1.80901 1.11898 1.10230 1.13000 1.18951 0.97181 0.95557 0.87949 1.21467 1.00572 1.34260 1.01699 0.93043 1.25739 1.01126 0.94800 0.96984 1.70040 1.37652 1.37322 1.11071 0.85560 0.79865 0.78097 0.78553 1.19505 1.19427 1.20781 1.16192 0.78806 0.80960 0.85350 1.91018 1.56359 1.64795 1.31199 0.88513 0.90368 0.94723 0.89671 0.83708 0.74039 0.79800 0.85506 0.88565 0.94144 0.97574 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 71.98 0.74 -0.45 16 2 C 0.10 0.81 6.05 86.38 0.52 1.33 16 3 N -0.53 -8.17 2.61 -656.81 -1.71 -9.88 16 4 C 0.21 2.04 10.38 83.17 0.86 2.90 16 5 C -0.32 -6.18 10.00 22.35 0.22 -5.95 16 6 C 0.52 16.57 6.78 85.05 0.58 17.15 16 7 O -0.56 -22.88 15.13 -4.57 -0.07 -22.95 16 8 N -0.56 -17.53 2.48 -782.83 -1.94 -19.47 16 9 C 0.12 4.44 4.67 86.38 0.40 4.84 16 10 C 0.01 0.44 2.42 -12.60 -0.03 0.41 16 11 H 0.11 4.49 8.14 -2.39 -0.02 4.47 16 12 C 0.24 11.39 11.78 89.45 1.05 12.44 16 13 N -0.48 -24.33 18.28 20.00 0.37 -23.97 16 14 C 0.04 2.14 4.42 29.85 0.13 2.28 16 15 C -0.54 -30.60 8.60 25.60 0.22 -30.38 16 16 H 0.05 2.90 7.59 -2.91 -0.02 2.87 16 17 C 0.01 0.73 5.46 84.66 0.46 1.19 16 18 N -0.92 -54.73 13.29 21.45 0.28 -54.45 16 19 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 C 0.68 18.27 8.12 179.18 1.45 19.73 16 24 O -0.56 -17.90 15.36 -3.98 -0.06 -17.96 16 25 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 27 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 1.09 7.38 -2.39 -0.02 1.07 16 29 H 0.15 -0.18 8.03 -2.38 -0.02 -0.20 16 30 H 0.24 -0.94 8.06 -2.91 -0.02 -0.97 16 31 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.13 4.16 7.39 -2.39 -0.02 4.14 16 33 H 0.10 3.57 7.42 -2.39 -0.02 3.55 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -83.24 318.00 6.60 -76.63 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 1.09 Total: -0.53 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 6.62 Total: 25.49 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.00 Total: -107.77 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.13 Total: -40.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -83.24 6.60 -76.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755293398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.824 kcal (2) G-P(sol) polarization free energy of solvation -83.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds