Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47344 * 2 1 4 4 C 1.36835 * 119.69096 * 270.25264 * 3 2 1 5 5 C 1.35017 * 119.68248 * 180.25321 * 4 3 2 6 6 C 1.41579 * 119.11405 * 359.49530 * 5 4 3 7 7 O 1.21775 * 120.30623 * 180.27423 * 6 5 4 8 8 N 1.34831 * 119.38438 * 0.25814 * 6 5 4 9 9 C 1.46508 * 119.86817 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47071 * 89.99947 * 9 8 6 11 11 H 1.09002 * 109.46944 * 304.99923 * 10 9 8 12 12 C 1.47194 * 109.47309 * 65.00186 * 10 9 8 13 13 N 4.78470 * 68.58773 * 49.63841 * 2 1 3 14 14 C 1.53000 * 109.47213 * 185.00228 * 10 9 8 15 15 C 1.50701 * 109.47315 * 174.99801 * 14 10 9 16 16 H 1.07999 * 119.99923 * 0.02562 * 15 14 10 17 17 C 1.37876 * 119.99707 * 180.02562 * 15 14 10 18 18 N 1.31515 * 120.00118 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99662 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47052 * 60.00057 * 19 17 15 21 21 H 1.48500 * 109.46926 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46947 * 299.99941 * 19 17 15 23 23 C 1.34543 * 119.68431 * 89.99782 * 3 2 1 24 24 O 1.21584 * 119.54028 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47228 * 300.00063 * 1 2 3 27 27 H 1.09002 * 109.46756 * 59.99578 * 1 2 3 28 28 H 1.09003 * 109.47221 * 240.00404 * 2 1 3 29 29 H 1.08994 * 109.47157 * 119.99908 * 2 1 3 30 30 H 1.07998 * 120.15952 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.44491 * 179.77917 * 5 4 3 32 32 H 1.08999 * 109.47058 * 209.99874 * 9 8 6 33 33 H 1.09002 * 109.46972 * 329.99862 * 9 8 6 34 34 H 1.08995 * 109.46907 * 294.99963 * 14 10 9 35 35 H 1.09008 * 109.47175 * 54.99696 * 14 10 9 36 36 H 0.97006 * 119.99899 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2394 2.0220 -1.1887 5 6 2.6944 3.2932 -1.1885 6 6 2.9239 3.9426 0.0485 7 8 3.3294 5.0905 0.0740 8 7 2.6890 3.2782 1.1980 9 6 2.9235 3.9397 2.4840 10 6 1.6453 4.6512 2.9320 11 1 1.3141 5.3315 2.1473 12 6 0.5944 3.6542 3.1929 13 7 -0.2168 2.8847 3.3942 14 6 1.9243 5.4445 4.2102 15 6 0.7016 6.2424 4.5833 16 1 -0.1860 6.1888 3.9703 17 6 0.7160 7.0409 5.7072 18 7 1.7970 7.1065 6.4534 19 14 -0.8000 8.0294 6.1701 20 1 -1.9411 7.1073 6.3997 21 1 -0.5290 8.7993 7.4107 22 1 -1.1350 8.9669 5.0683 23 6 2.2405 2.0094 1.1689 24 8 2.0335 1.4228 2.2135 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0543 1.5121 -2.1226 31 1 2.8765 3.8094 -2.1195 32 1 3.2054 3.1959 3.2292 33 1 3.7266 4.6688 2.3765 34 1 2.1696 4.7559 5.0188 35 1 2.7624 6.1210 4.0423 36 1 1.8070 7.6680 7.2444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755293400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -13.075317 kcal Electronic energy + Delta-G solvation = -21642.860574 eV Core-core repulsion = 18321.134901 eV Total energy + Delta-G solvation = -3321.725673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33713 -39.04844 -37.75389 -36.28448 -35.10544 -33.79299 -32.88536 -31.47549 -30.06738 -27.54201 -25.05859 -24.49914 -23.03835 -22.58280 -21.79022 -19.28020 -17.96168 -17.11041 -17.01267 -16.38084 -16.27201 -15.58905 -15.09055 -14.55932 -14.50595 -14.41032 -13.79914 -13.66328 -13.51434 -13.22587 -12.88494 -12.48739 -12.35723 -12.02804 -11.66599 -11.58638 -11.48104 -11.33319 -11.03474 -10.85037 -10.80620 -10.55847 -10.28759 -10.16750 -9.80904 -9.43110 -9.13023 -8.68719 -8.41207 -6.05514 -4.08592 0.91325 1.87979 2.06133 2.99940 3.34746 3.38343 3.42094 3.47421 3.72501 3.76210 4.17843 4.37747 4.44376 4.68963 4.75464 4.82670 4.96150 5.11526 5.31087 5.32496 5.42928 5.48478 5.50048 5.56072 5.65094 5.88703 5.94640 6.03338 6.25349 6.44438 6.50249 7.25058 7.45265 7.54591 7.61203 7.88406 7.98382 8.25777 8.52831 8.94429 9.56174 11.05445 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004953 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.197406 B = 5652.261050 C = 6211.620530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 N -0.538 5.538 4 C 0.169 3.831 5 C -0.296 4.296 6 C 0.543 3.457 7 O -0.508 6.508 8 N -0.554 5.554 9 C 0.116 3.884 10 C -0.004 4.004 11 H 0.104 0.896 12 C 0.235 3.765 13 N -0.458 5.458 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.686 3.314 24 O -0.522 6.522 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -13.361 -18.413 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 N -0.259 5.259 4 C 0.045 3.955 5 C -0.324 4.324 6 C 0.339 3.661 7 O -0.382 6.382 8 N -0.298 5.298 9 C -0.005 4.005 10 C -0.026 4.026 11 H 0.122 0.878 12 C -0.082 4.082 13 N -0.135 5.135 14 C -0.003 4.003 15 C -0.564 4.564 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.389 3.611 24 O -0.393 6.393 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.422 -14.215 -17.210 22.452 hybrid contribution -0.615 0.917 0.127 1.112 sum 1.808 -13.297 -17.083 21.723 Atomic orbital electron populations 1.22181 0.94269 1.03259 1.03403 1.21863 0.95732 0.78664 1.04976 1.44982 1.60783 1.15644 1.04491 1.22273 0.90312 0.93120 0.89812 1.21953 1.15328 0.95945 0.99145 1.17370 0.78010 0.86925 0.83833 1.90911 1.43746 1.16382 1.87164 1.46703 1.59776 1.12387 1.10972 1.22055 0.99058 0.98025 0.81402 1.19539 0.87493 0.91819 1.03782 0.87788 1.28924 0.94006 0.92949 0.92301 1.80944 1.11378 1.11399 1.09738 1.19144 0.98532 0.94356 0.88265 1.21042 0.98737 1.26496 1.10101 0.92650 1.24933 0.96154 0.96654 0.96109 1.69929 1.27559 1.39467 1.15960 0.86635 0.83268 0.80166 0.77903 1.20290 1.21126 1.20025 1.15997 0.79184 0.81758 0.84141 1.91076 1.54060 1.64545 1.29604 0.90513 0.91206 0.92165 0.88798 0.88062 0.80922 0.81373 0.87964 0.86372 0.95248 0.93882 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.11 0.82 6.06 -4.04 -0.02 0.79 16 3 N -0.54 -5.52 2.61 -121.53 -0.32 -5.84 16 4 C 0.17 1.23 10.38 -16.46 -0.17 1.05 16 5 C -0.30 -2.90 10.00 -39.45 -0.39 -3.29 16 6 C 0.54 7.96 7.44 -14.96 -0.11 7.85 16 7 O -0.51 -9.02 16.70 5.12 0.09 -8.94 16 8 N -0.55 -8.63 2.48 -124.02 -0.31 -8.93 16 9 C 0.12 1.99 4.68 -4.04 -0.02 1.97 16 10 C 0.00 -0.08 2.42 -93.41 -0.23 -0.31 16 11 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 12 C 0.24 5.28 11.76 -20.76 -0.24 5.04 16 13 N -0.46 -10.86 18.28 42.15 0.77 -10.09 16 14 C 0.04 0.87 4.42 -27.88 -0.12 0.75 16 15 C -0.53 -14.58 8.60 -34.44 -0.30 -14.88 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 19 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.69 10.24 7.47 -87.29 -0.65 9.59 16 24 O -0.52 -9.41 13.74 5.29 0.07 -9.33 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.32 8.03 -51.93 -0.42 -0.09 16 29 H 0.10 0.91 7.37 -51.93 -0.38 0.52 16 30 H 0.17 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.10 1.74 7.38 -51.93 -0.38 1.36 16 33 H 0.12 1.90 7.42 -51.93 -0.39 1.52 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -35.68 317.96 -5.65 -41.33 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.48 Total: -3.75 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.98 Total: 9.24 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.88 Total: -50.23 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.16 Total: -18.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.68 -5.65 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755293400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.257 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds