Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47344 * 2 1 4 4 C 1.36835 * 119.69096 * 270.25264 * 3 2 1 5 5 C 1.35017 * 119.68248 * 180.25321 * 4 3 2 6 6 C 1.41579 * 119.11405 * 359.49530 * 5 4 3 7 7 O 1.21775 * 120.30623 * 180.27423 * 6 5 4 8 8 N 1.34831 * 119.38438 * 0.25814 * 6 5 4 9 9 C 1.46508 * 119.86817 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47071 * 89.99947 * 9 8 6 11 11 H 1.09002 * 109.46944 * 304.99923 * 10 9 8 12 12 C 1.47194 * 109.47309 * 65.00186 * 10 9 8 13 13 N 4.78470 * 68.58773 * 49.63841 * 2 1 3 14 14 C 1.53000 * 109.47213 * 185.00228 * 10 9 8 15 15 C 1.50701 * 109.47315 * 174.99801 * 14 10 9 16 16 H 1.07999 * 119.99923 * 0.02562 * 15 14 10 17 17 C 1.37876 * 119.99707 * 180.02562 * 15 14 10 18 18 N 1.31515 * 120.00118 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99662 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47052 * 60.00057 * 19 17 15 21 21 H 1.48500 * 109.46926 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46947 * 299.99941 * 19 17 15 23 23 C 1.34543 * 119.68431 * 89.99782 * 3 2 1 24 24 O 1.21584 * 119.54028 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47228 * 300.00063 * 1 2 3 27 27 H 1.09002 * 109.46756 * 59.99578 * 1 2 3 28 28 H 1.09003 * 109.47221 * 240.00404 * 2 1 3 29 29 H 1.08994 * 109.47157 * 119.99908 * 2 1 3 30 30 H 1.07998 * 120.15952 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.44491 * 179.77917 * 5 4 3 32 32 H 1.08999 * 109.47058 * 209.99874 * 9 8 6 33 33 H 1.09002 * 109.46972 * 329.99862 * 9 8 6 34 34 H 1.08995 * 109.46907 * 294.99963 * 14 10 9 35 35 H 1.09008 * 109.47175 * 54.99696 * 14 10 9 36 36 H 0.97006 * 119.99899 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2394 2.0220 -1.1887 5 6 2.6944 3.2932 -1.1885 6 6 2.9239 3.9426 0.0485 7 8 3.3294 5.0905 0.0740 8 7 2.6890 3.2782 1.1980 9 6 2.9235 3.9397 2.4840 10 6 1.6453 4.6512 2.9320 11 1 1.3141 5.3315 2.1473 12 6 0.5944 3.6542 3.1929 13 7 -0.2168 2.8847 3.3942 14 6 1.9243 5.4445 4.2102 15 6 0.7016 6.2424 4.5833 16 1 -0.1860 6.1888 3.9703 17 6 0.7160 7.0409 5.7072 18 7 1.7970 7.1065 6.4534 19 14 -0.8000 8.0294 6.1701 20 1 -1.9411 7.1073 6.3997 21 1 -0.5290 8.7993 7.4107 22 1 -1.1350 8.9669 5.0683 23 6 2.2405 2.0094 1.1689 24 8 2.0335 1.4228 2.2135 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0543 1.5121 -2.1226 31 1 2.8765 3.8094 -2.1195 32 1 3.2054 3.1959 3.2292 33 1 3.7266 4.6688 2.3765 34 1 2.1696 4.7559 5.0188 35 1 2.7624 6.1210 4.0423 36 1 1.8070 7.6680 7.2444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755293400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -36.591308 kcal Electronic energy + Delta-G solvation = -21643.880304 eV Core-core repulsion = 18321.134901 eV Total energy + Delta-G solvation = -3322.745403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39259 -40.15723 -38.99087 -37.79056 -36.44785 -35.60130 -34.21271 -33.00765 -30.85406 -29.24528 -26.56197 -25.40691 -24.33223 -23.70604 -23.46623 -20.27036 -19.14022 -18.50799 -18.32543 -18.04052 -17.56252 -16.87928 -16.46852 -16.10832 -15.58022 -15.21811 -15.06728 -14.98599 -14.69868 -14.47125 -14.27203 -13.93914 -13.92702 -13.50793 -13.14664 -13.03263 -12.91098 -12.69763 -12.53783 -12.31459 -12.19462 -12.08243 -11.98160 -11.64484 -11.44358 -11.23408 -10.75680 -10.59529 -9.51549 -8.23413 -6.33097 0.14170 0.88738 0.97105 1.38189 1.40070 1.47760 1.86333 1.90445 2.02697 2.38545 2.49503 3.05100 3.13058 3.59197 3.77362 3.89224 3.99403 4.05893 4.14271 4.20738 4.36659 4.45788 4.53012 4.60042 4.70664 4.79546 4.87886 4.93326 5.23353 5.33551 5.35633 5.47179 5.52569 5.71178 6.11496 6.22887 6.52794 6.67880 6.78503 6.89052 7.35039 8.87648 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004953 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.197406 B = 5652.261050 C = 6211.620530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.532 5.532 4 C 0.202 3.798 5 C -0.316 4.316 6 C 0.531 3.469 7 O -0.553 6.553 8 N -0.560 5.560 9 C 0.125 3.875 10 C 0.009 3.991 11 H 0.107 0.893 12 C 0.242 3.758 13 N -0.481 5.481 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.954 3.046 20 H -0.280 1.280 21 H -0.277 1.277 22 H -0.263 1.263 23 C 0.676 3.324 24 O -0.563 6.563 25 H 0.097 0.903 26 H 0.016 0.984 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.243 0.757 31 H 0.196 0.804 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.007 0.993 35 H 0.038 0.962 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -14.598 -21.453 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.015 4.015 3 N -0.252 5.252 4 C 0.079 3.921 5 C -0.342 4.342 6 C 0.330 3.670 7 O -0.432 6.432 8 N -0.303 5.303 9 C 0.002 3.998 10 C -0.013 4.013 11 H 0.125 0.875 12 C -0.074 4.074 13 N -0.158 5.158 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.779 3.221 20 H -0.206 1.206 21 H -0.202 1.202 22 H -0.188 1.188 23 C 0.380 3.620 24 O -0.437 6.437 25 H 0.116 0.884 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.172 0.828 29 H 0.099 0.901 30 H 0.259 0.741 31 H 0.213 0.787 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.883 -15.479 -20.301 25.599 hybrid contribution -0.460 1.197 1.046 1.655 sum 1.423 -14.282 -19.256 24.016 Atomic orbital electron populations 1.22160 0.94792 1.04120 1.01620 1.22212 0.95190 0.77105 1.06954 1.45242 1.59403 1.16539 1.03969 1.23208 0.86362 0.92097 0.90463 1.22097 1.17337 0.97210 0.97517 1.18268 0.77252 0.86710 0.84755 1.90885 1.46421 1.18312 1.87553 1.46768 1.59982 1.12958 1.10624 1.21743 0.97206 0.98049 0.82827 1.19385 0.88602 0.91395 1.01955 0.87515 1.29245 0.93771 0.92710 0.91706 1.80924 1.12283 1.12246 1.10316 1.18936 0.97348 0.93892 0.89374 1.21405 0.99534 1.26985 1.10304 0.93098 1.25737 0.98995 0.97744 0.96129 1.70028 1.29317 1.40246 1.16412 0.85674 0.79499 0.78820 0.78148 1.20561 1.20183 1.18808 1.16323 0.78986 0.81392 0.85326 1.91049 1.55818 1.65293 1.31579 0.88448 0.96490 0.90243 0.82788 0.90094 0.74072 0.78699 0.88372 0.85645 0.97424 0.94353 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.10 1.20 6.06 86.38 0.52 1.72 16 3 N -0.53 -9.32 2.61 -656.80 -1.71 -11.04 16 4 C 0.20 1.90 10.38 83.17 0.86 2.77 16 5 C -0.32 -5.16 10.00 22.35 0.22 -4.94 16 6 C 0.53 15.24 7.44 85.06 0.63 15.88 16 7 O -0.55 -19.95 16.70 -4.59 -0.08 -20.02 16 8 N -0.56 -17.53 2.48 -782.82 -1.94 -19.47 16 9 C 0.12 4.44 4.68 86.38 0.40 4.85 16 10 C 0.01 0.39 2.42 -12.60 -0.03 0.35 16 11 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16 12 C 0.24 11.22 11.76 89.44 1.05 12.27 16 13 N -0.48 -23.43 18.28 20.00 0.37 -23.06 16 14 C 0.04 2.20 4.42 29.85 0.13 2.33 16 15 C -0.54 -30.86 8.60 25.60 0.22 -30.64 16 16 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 17 C 0.01 0.77 5.46 84.65 0.46 1.23 16 18 N -0.92 -54.86 13.29 21.45 0.28 -54.57 16 19 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.68 19.91 7.47 179.18 1.34 21.24 16 24 O -0.56 -20.84 13.74 -3.98 -0.05 -20.89 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.15 0.01 8.03 -2.39 -0.02 -0.01 16 29 H 0.08 1.32 7.37 -2.39 -0.02 1.30 16 30 H 0.24 -1.00 8.06 -2.91 -0.02 -1.03 16 31 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.10 3.54 7.38 -2.39 -0.02 3.53 16 33 H 0.13 4.24 7.42 -2.39 -0.02 4.22 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -82.65 317.96 6.54 -76.11 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: 1.09 Total: 0.29 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 6.56 Total: 25.48 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.01 Total: -108.14 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.13 Total: -40.92 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.65 6.54 -76.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755293400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.517 kcal (2) G-P(sol) polarization free energy of solvation -82.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds