Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00156 * 2 1 4 4 N 1.46500 * 109.47037 * 126.10547 * 3 2 1 5 5 C 1.46497 * 120.00592 * 277.06426 * 4 3 2 6 6 C 1.50694 * 109.47355 * 270.00379 * 5 4 3 7 7 H 1.07999 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00341 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47265 * 90.00262 * 10 8 6 12 12 H 1.48500 * 109.47516 * 210.00641 * 10 8 6 13 13 H 1.48504 * 109.47004 * 330.00478 * 10 8 6 14 14 C 1.34776 * 119.99599 * 97.06927 * 4 3 2 15 15 O 1.21584 * 120.00137 * 185.46478 * 14 4 3 16 16 C 1.47629 * 120.00094 * 5.46039 * 14 4 3 17 17 C 1.40059 * 120.88528 * 312.37094 * 16 14 4 18 18 N 1.32010 * 118.99117 * 179.72470 * 17 16 14 19 19 C 1.32468 * 120.91488 * 0.27650 * 18 17 16 20 20 O 1.35299 * 119.02537 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00309 * 179.97438 * 20 19 18 22 22 N 1.32471 * 121.95972 * 359.97438 * 19 18 17 23 23 C 1.32013 * 120.91160 * 0.02562 * 22 19 18 24 24 H 1.07997 * 120.00244 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00205 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99622 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47201 * 6.11263 * 3 2 1 28 28 H 1.08995 * 109.47847 * 246.11304 * 3 2 1 29 29 H 1.09002 * 109.46648 * 30.00436 * 5 4 3 30 30 H 1.09004 * 109.47225 * 149.99513 * 5 4 3 31 31 H 0.97000 * 120.00542 * 179.97438 * 9 8 6 32 32 H 1.08004 * 120.50131 * 359.97438 * 17 16 14 33 33 H 1.09000 * 109.46913 * 179.97438 * 21 20 19 34 34 H 1.08998 * 109.47283 * 300.00315 * 21 20 19 35 35 H 1.09007 * 109.47120 * 60.00078 * 21 20 19 36 36 H 1.08003 * 120.50840 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0125 1.3209 1.1159 5 6 2.5592 1.6948 2.4579 6 6 2.7063 3.1833 2.6413 7 1 3.0986 3.7901 1.8387 8 6 2.3410 3.7704 3.8342 9 7 2.4688 5.0694 3.9941 10 14 1.6630 2.7207 5.2227 11 1 2.7810 2.2534 6.0813 12 1 0.7175 3.5265 6.0363 13 1 0.9515 1.5476 4.6544 14 6 4.3028 0.9917 0.9079 15 8 5.0682 0.9081 1.8489 16 6 4.7867 0.7324 -0.4625 17 6 4.0755 -0.1069 -1.3294 18 7 4.5395 -0.3083 -2.5487 19 6 5.6627 0.2659 -2.9530 20 8 6.1036 0.0325 -4.2107 21 6 7.3190 0.6741 -4.6017 22 7 6.3672 1.0620 -2.1626 23 6 5.9720 1.3151 -0.9287 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3602 2.1307 0.1094 28 1 2.6056 1.4117 -0.9396 29 1 1.5125 1.4155 2.5787 30 1 3.1621 1.1755 3.2029 31 1 2.2115 5.4825 4.8331 32 1 3.1593 -0.5788 -1.0065 33 1 7.5587 0.4027 -5.6298 34 1 7.1989 1.7550 -4.5294 35 1 8.1270 0.3536 -3.9439 36 1 6.5512 1.9655 -0.2900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814135634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 23.858559 kcal Electronic energy + Delta-G solvation = -21230.403578 eV Core-core repulsion = 17910.279478 eV Total energy + Delta-G solvation = -3320.124100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46343 -39.41835 -38.12895 -36.05907 -33.98103 -33.33248 -32.32875 -31.64402 -28.42975 -27.75106 -25.87519 -24.83070 -24.20000 -22.34292 -20.38106 -19.20533 -18.87224 -18.10284 -17.04324 -16.92874 -16.59548 -15.95966 -15.18241 -15.00574 -14.53305 -14.44801 -14.23705 -13.88146 -13.67731 -13.11770 -12.89027 -12.43309 -12.22006 -12.00423 -11.78006 -11.70045 -11.48080 -11.31841 -11.03465 -10.96838 -10.58775 -10.22759 -9.68836 -9.44574 -9.38673 -9.32668 -8.99508 -8.64621 -7.92227 -6.14663 -4.14667 0.63505 0.91318 2.23153 2.38562 3.06088 3.25895 3.31874 3.33989 3.52819 3.79630 3.87921 4.34674 4.42832 4.48935 4.70343 4.95463 5.02321 5.04837 5.07980 5.17038 5.20336 5.32751 5.41714 5.69084 5.85701 5.86543 6.02759 6.48243 6.59477 6.60349 6.72818 6.84789 6.94861 7.17394 7.52723 7.86204 8.01237 8.37623 8.68924 8.87965 9.44823 10.98373 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.004818 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.071296 B = 5810.302505 C = 6503.738097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.128 3.872 4 N -0.578 5.578 5 C 0.217 3.783 6 C -0.534 4.534 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.565 3.435 15 O -0.527 6.527 16 C -0.262 4.262 17 C 0.207 3.793 18 N -0.525 5.525 19 C 0.502 3.498 20 O -0.289 6.289 21 C 0.043 3.957 22 N -0.568 5.568 23 C 0.237 3.763 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.188 0.812 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -9.981 -14.089 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.004 3.996 4 N -0.308 5.308 5 C 0.097 3.903 6 C -0.572 4.572 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.350 3.650 15 O -0.404 6.404 16 C -0.271 4.271 17 C 0.040 3.960 18 N -0.250 5.250 19 C 0.200 3.800 20 O -0.190 6.190 21 C -0.052 4.052 22 N -0.297 5.297 23 C 0.071 3.929 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.204 0.796 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.787 -10.174 -14.674 18.072 hybrid contribution -0.501 -0.043 1.624 1.700 sum 2.286 -10.217 -13.050 16.731 Atomic orbital electron populations 1.23895 0.95688 1.02199 0.98664 1.23402 0.96642 0.98579 1.01643 1.20788 0.92917 0.95892 0.89963 1.47829 1.06928 1.64956 1.11040 1.19732 0.95124 0.96915 0.78524 1.21296 1.43958 0.90489 1.01480 0.90653 1.24828 0.95019 0.94852 0.98078 1.69884 1.47805 1.09665 1.25965 0.86874 0.79503 0.80697 0.82802 1.19814 1.21019 1.18932 1.17587 0.82728 0.78054 0.86639 1.90792 1.54854 1.51892 1.42855 1.21818 1.00431 1.05994 0.98809 1.23860 0.96740 0.89759 0.85633 1.67631 1.13045 1.26470 1.17819 1.20916 0.86683 0.86556 0.85802 1.86043 1.42140 1.67278 1.23493 1.23027 0.83328 0.98257 1.00633 1.68134 1.34979 1.19719 1.06844 1.23136 0.89984 0.90776 0.88973 0.87925 0.88331 0.87285 0.88780 0.90453 0.94746 0.94135 0.92456 0.79606 0.87854 0.91655 0.91733 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 14.32 29.01 0.42 -1.46 16 2 C -0.18 -2.30 8.53 -36.03 -0.31 -2.61 16 3 C 0.13 1.94 5.35 -5.20 -0.03 1.92 16 4 N -0.58 -11.27 2.44 -177.64 -0.43 -11.70 16 5 C 0.22 5.06 4.28 -5.20 -0.02 5.04 16 6 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16 7 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 10 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 14 C 0.57 11.07 7.28 -12.43 -0.09 10.98 16 15 O -0.53 -12.32 16.58 5.29 0.09 -12.23 16 16 C -0.26 -4.15 5.01 -104.70 -0.52 -4.68 16 17 C 0.21 2.88 8.77 -16.79 -0.15 2.73 16 18 N -0.52 -7.74 10.45 -14.39 -0.15 -7.89 16 19 C 0.50 7.29 8.48 -90.99 -0.77 6.52 16 20 O -0.29 -3.69 10.55 -17.59 -0.19 -3.88 16 21 C 0.04 0.37 10.35 101.05 1.05 1.42 16 22 N -0.57 -8.12 9.19 -14.39 -0.13 -8.25 16 23 C 0.24 3.53 11.03 -16.79 -0.19 3.34 16 24 H 0.10 1.14 7.84 -52.49 -0.41 0.72 16 25 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.11 1.23 6.55 -52.49 -0.34 0.88 16 27 H 0.09 1.49 7.78 -51.93 -0.40 1.08 16 28 H 0.08 1.07 5.25 -51.93 -0.27 0.80 16 29 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 30 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.19 2.22 4.14 -52.48 -0.22 2.00 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 36 H 0.18 2.50 8.06 -52.48 -0.42 2.07 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -33.34 312.46 -5.12 -38.47 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.07 Total: 0.45 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.05 Total: 10.17 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.06 Total: -53.94 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.10 Total: -16.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.34 -5.12 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814135634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.326 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds