Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00156 * 2 1 4 4 N 1.46500 * 109.47037 * 126.10547 * 3 2 1 5 5 C 1.46497 * 120.00592 * 277.06426 * 4 3 2 6 6 C 1.50694 * 109.47355 * 270.00379 * 5 4 3 7 7 H 1.07999 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00341 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47265 * 90.00262 * 10 8 6 12 12 H 1.48500 * 109.47516 * 210.00641 * 10 8 6 13 13 H 1.48504 * 109.47004 * 330.00478 * 10 8 6 14 14 C 1.34776 * 119.99599 * 97.06927 * 4 3 2 15 15 O 1.21584 * 120.00137 * 185.46478 * 14 4 3 16 16 C 1.47629 * 120.00094 * 5.46039 * 14 4 3 17 17 C 1.40059 * 120.88528 * 312.37094 * 16 14 4 18 18 N 1.32010 * 118.99117 * 179.72470 * 17 16 14 19 19 C 1.32468 * 120.91488 * 0.27650 * 18 17 16 20 20 O 1.35299 * 119.02537 * 179.97438 * 19 18 17 21 21 C 1.42895 * 117.00309 * 179.97438 * 20 19 18 22 22 N 1.32471 * 121.95972 * 359.97438 * 19 18 17 23 23 C 1.32013 * 120.91160 * 0.02562 * 22 19 18 24 24 H 1.07997 * 120.00244 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00205 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99622 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47201 * 6.11263 * 3 2 1 28 28 H 1.08995 * 109.47847 * 246.11304 * 3 2 1 29 29 H 1.09002 * 109.46648 * 30.00436 * 5 4 3 30 30 H 1.09004 * 109.47225 * 149.99513 * 5 4 3 31 31 H 0.97000 * 120.00542 * 179.97438 * 9 8 6 32 32 H 1.08004 * 120.50131 * 359.97438 * 17 16 14 33 33 H 1.09000 * 109.46913 * 179.97438 * 21 20 19 34 34 H 1.08998 * 109.47283 * 300.00315 * 21 20 19 35 35 H 1.09007 * 109.47120 * 60.00078 * 21 20 19 36 36 H 1.08003 * 120.50840 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0125 1.3209 1.1159 5 6 2.5592 1.6948 2.4579 6 6 2.7063 3.1833 2.6413 7 1 3.0986 3.7901 1.8387 8 6 2.3410 3.7704 3.8342 9 7 2.4688 5.0694 3.9941 10 14 1.6630 2.7207 5.2227 11 1 2.7810 2.2534 6.0813 12 1 0.7175 3.5265 6.0363 13 1 0.9515 1.5476 4.6544 14 6 4.3028 0.9917 0.9079 15 8 5.0682 0.9081 1.8489 16 6 4.7867 0.7324 -0.4625 17 6 4.0755 -0.1069 -1.3294 18 7 4.5395 -0.3083 -2.5487 19 6 5.6627 0.2659 -2.9530 20 8 6.1036 0.0325 -4.2107 21 6 7.3190 0.6741 -4.6017 22 7 6.3672 1.0620 -2.1626 23 6 5.9720 1.3151 -0.9287 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3602 2.1307 0.1094 28 1 2.6056 1.4117 -0.9396 29 1 1.5125 1.4155 2.5787 30 1 3.1621 1.1755 3.2029 31 1 2.2115 5.4825 4.8331 32 1 3.1593 -0.5788 -1.0065 33 1 7.5587 0.4027 -5.6298 34 1 7.1989 1.7550 -4.5294 35 1 8.1270 0.3536 -3.9439 36 1 6.5512 1.9655 -0.2900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814135634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = -2.020008 kcal Electronic energy + Delta-G solvation = -21231.525757 eV Core-core repulsion = 17910.279478 eV Total energy + Delta-G solvation = -3321.246279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63031 -40.80045 -39.25266 -37.48497 -35.23990 -35.00074 -33.82800 -33.00397 -30.15591 -28.65782 -27.13906 -26.12409 -25.42942 -24.06180 -21.52385 -20.53561 -19.94182 -19.26537 -19.06915 -18.38443 -17.68667 -17.33401 -16.46359 -16.29292 -15.98197 -15.79904 -15.49984 -14.96787 -14.85142 -14.72229 -14.35970 -14.06661 -13.53114 -13.30296 -13.03700 -12.97608 -12.90264 -12.48963 -12.43223 -12.27455 -12.11103 -11.93010 -11.72681 -10.98853 -10.81239 -10.52628 -10.41101 -10.16866 -9.55405 -8.32229 -6.37992 -0.55440 -0.23151 1.25703 1.36768 1.39868 1.40996 1.48106 1.58027 2.18385 2.33127 2.51729 2.76040 3.02533 3.26780 3.41559 3.46887 3.80924 4.01686 4.12504 4.29000 4.37002 4.37357 4.55914 4.64015 4.76940 4.81921 4.83383 4.93313 5.06662 5.39453 5.41601 5.46875 5.69335 5.85750 5.87147 6.22334 6.48683 6.63914 6.73673 7.10597 7.28482 8.84319 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.004818 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.071296 B = 5810.302505 C = 6503.738097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.201 4.201 3 C 0.126 3.874 4 N -0.582 5.582 5 C 0.227 3.773 6 C -0.539 4.539 7 H 0.032 0.968 8 C 0.016 3.984 9 N -0.944 5.944 10 Si 0.943 3.057 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.235 1.235 14 C 0.565 3.435 15 O -0.575 6.575 16 C -0.276 4.276 17 C 0.226 3.774 18 N -0.533 5.533 19 C 0.500 3.500 20 O -0.295 6.295 21 C 0.036 3.964 22 N -0.566 5.566 23 C 0.238 3.762 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.209 0.791 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -12.176 -15.131 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.220 4.220 3 C 0.004 3.996 4 N -0.311 5.311 5 C 0.106 3.894 6 C -0.577 4.577 7 H 0.050 0.950 8 C -0.183 4.183 9 N -0.584 5.584 10 Si 0.766 3.234 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.158 1.158 14 C 0.352 3.648 15 O -0.455 6.455 16 C -0.284 4.284 17 C 0.059 3.941 18 N -0.258 5.258 19 C 0.199 3.801 20 O -0.195 6.195 21 C -0.059 4.059 22 N -0.295 5.295 23 C 0.072 3.928 24 H 0.120 0.880 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.628 -12.385 -15.794 20.136 hybrid contribution -0.088 0.713 1.774 1.914 sum 1.540 -11.672 -14.019 18.307 Atomic orbital electron populations 1.24150 0.95236 1.03442 0.95818 1.23270 0.97058 0.97500 1.04125 1.20967 0.92244 0.97492 0.88855 1.47852 1.07887 1.64446 1.10890 1.19385 0.95851 0.93663 0.80526 1.21529 1.43190 0.92585 1.00410 0.94991 1.25781 0.95391 0.96082 1.01027 1.70036 1.49490 1.11829 1.27001 0.85782 0.78918 0.79730 0.78982 1.20094 1.20268 1.15836 1.18023 0.82229 0.76922 0.87593 1.90754 1.55968 1.54092 1.44686 1.21470 1.01538 1.08139 0.97292 1.24104 0.96695 0.88415 0.84885 1.67739 1.13385 1.26857 1.17849 1.21228 0.86550 0.85924 0.86425 1.86073 1.43607 1.67484 1.22340 1.23373 0.81796 0.98189 1.02510 1.68203 1.34898 1.20006 1.06424 1.23246 0.89693 0.90560 0.89332 0.88031 0.85727 0.85630 0.89876 0.89320 0.92780 0.95533 0.92255 0.77522 0.84409 0.91626 0.91557 0.79629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 14.32 67.78 0.97 -1.86 16 2 C -0.20 -4.49 8.53 25.65 0.22 -4.27 16 3 C 0.13 3.71 5.35 85.63 0.46 4.17 16 4 N -0.58 -22.65 2.44 -834.18 -2.04 -24.69 16 5 C 0.23 10.56 4.28 85.63 0.37 10.92 16 6 C -0.54 -30.52 9.94 25.60 0.25 -30.27 16 7 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 8 C 0.02 0.89 5.47 84.66 0.46 1.36 16 9 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 10 Si 0.94 42.92 27.47 68.60 1.88 44.81 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 14 C 0.57 22.40 7.28 86.72 0.63 23.03 16 15 O -0.57 -27.61 16.58 -3.98 -0.07 -27.67 16 16 C -0.28 -8.65 5.01 -19.91 -0.10 -8.75 16 17 C 0.23 5.93 8.77 85.11 0.75 6.68 16 18 N -0.53 -14.74 10.45 -312.40 -3.26 -18.01 16 19 C 0.50 13.77 8.48 180.48 1.53 15.30 16 20 O -0.29 -6.95 10.55 -85.85 -0.91 -7.86 16 21 C 0.04 0.54 10.35 113.37 1.17 1.71 16 22 N -0.57 -15.67 9.19 -312.40 -2.87 -18.54 16 23 C 0.24 7.05 11.03 85.11 0.94 7.99 16 24 H 0.10 1.96 7.84 -2.91 -0.02 1.94 16 25 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 26 H 0.13 2.40 6.55 -2.91 -0.02 2.38 16 27 H 0.08 2.60 7.78 -2.38 -0.02 2.58 16 28 H 0.09 2.36 5.25 -2.39 -0.01 2.35 16 29 H 0.05 2.30 7.13 -2.39 -0.02 2.29 16 30 H 0.03 1.32 6.78 -2.38 -0.02 1.30 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 32 H 0.21 4.44 4.14 -2.91 -0.01 4.42 16 33 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 35 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.19 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -74.00 312.46 1.74 -72.26 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.05 Total: 11.65 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 7.65 Total: 26.02 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -7.87 Total: -119.21 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.97 Total: -35.53 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Total: -74.00 1.74 -72.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814135634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.245 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds