Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00210 * 2 1 4 4 N 1.46505 * 109.47127 * 125.00066 * 3 2 1 5 5 C 1.46499 * 119.99688 * 262.87426 * 4 3 2 6 6 C 1.50703 * 109.47026 * 270.00015 * 5 4 3 7 7 H 1.08002 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99917 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99770 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00030 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47119 * 90.00223 * 10 8 6 12 12 H 1.48497 * 109.47075 * 209.99969 * 10 8 6 13 13 H 1.48504 * 109.47374 * 330.00436 * 10 8 6 14 14 C 1.34770 * 120.00026 * 82.87436 * 4 3 2 15 15 O 1.21481 * 120.00218 * 183.12690 * 14 4 3 16 16 C 1.48464 * 120.00219 * 3.13739 * 14 4 3 17 17 C 1.39500 * 120.51974 * 173.25437 * 16 14 4 18 18 C 1.38765 * 118.38906 * 179.71809 * 17 16 14 19 19 N 1.32157 * 119.22041 * 0.27994 * 18 17 16 20 20 C 1.32399 * 120.98011 * 359.97438 * 19 18 17 21 21 O 1.35467 * 119.11691 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99708 * 359.97438 * 21 20 19 23 23 N 1.32111 * 121.76590 * 359.97438 * 20 19 18 24 24 H 1.08008 * 120.00102 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00169 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99834 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47034 * 4.99888 * 3 2 1 28 28 H 1.09000 * 109.47311 * 245.00380 * 3 2 1 29 29 H 1.09000 * 109.47313 * 30.00030 * 5 4 3 30 30 H 1.09005 * 109.47005 * 150.00282 * 5 4 3 31 31 H 0.97005 * 119.99497 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.80518 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.38951 * 180.25048 * 18 17 16 34 34 H 1.08998 * 109.47691 * 300.00571 * 22 21 20 35 35 H 1.08998 * 109.47261 * 60.00515 * 22 21 20 36 36 H 1.09003 * 109.47178 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.6139 2.0044 2.3762 6 6 3.0399 3.4487 2.3170 7 1 3.5429 3.8279 1.4397 8 6 2.7876 4.2862 3.3829 9 7 3.1589 5.5468 3.3309 10 14 1.9170 3.6306 4.9000 11 1 2.9224 3.1149 5.8636 12 1 1.1382 4.7240 5.5350 13 1 0.9983 2.5318 4.5076 14 6 4.1990 0.7377 1.0271 15 8 4.9476 0.7104 1.9835 16 6 4.6119 0.1167 -0.2567 17 6 5.9064 -0.3764 -0.4211 18 6 6.2432 -0.9533 -1.6373 19 7 5.3361 -1.0122 -2.5966 20 6 4.1167 -0.5307 -2.4119 21 8 3.2163 -0.6114 -3.4209 22 6 3.6563 -1.2219 -4.6356 23 7 3.7541 0.0256 -1.2698 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.5328 1.9494 2.5037 30 1 3.1044 1.5151 3.2179 31 1 2.9810 6.1360 4.0807 32 1 6.6278 -0.3144 0.3803 33 1 7.2351 -1.3490 -1.7983 34 1 4.4993 -0.6614 -5.0395 35 1 3.9648 -2.2480 -4.4356 36 1 2.8405 -1.2218 -5.3586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820224449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = 35.753141 kcal Electronic energy + Delta-G solvation = -21516.205147 eV Core-core repulsion = 18196.596834 eV Total energy + Delta-G solvation = -3319.608313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44313 -39.27761 -38.10271 -35.89231 -33.99457 -33.09453 -32.06575 -31.49477 -28.50983 -27.65703 -25.93944 -24.88648 -23.97761 -22.28196 -20.16333 -19.48575 -18.28763 -17.79602 -16.93357 -16.59106 -16.45611 -15.75773 -15.45554 -14.85805 -14.63320 -14.54851 -14.12558 -13.84999 -13.66603 -13.08274 -12.85692 -12.38109 -12.19800 -11.79457 -11.65080 -11.50625 -11.24061 -11.03904 -10.88213 -10.70895 -10.52136 -10.16054 -9.88756 -9.50849 -9.19485 -9.10625 -8.74069 -8.59592 -7.79499 -6.09878 -4.09536 0.55406 0.91672 2.39148 2.61542 3.10802 3.29960 3.35778 3.37897 3.56156 3.85232 3.93511 4.39112 4.47838 4.61448 4.89151 5.00831 5.05489 5.15677 5.23149 5.36830 5.38432 5.56789 5.58682 5.90191 5.97970 6.25258 6.40235 6.61595 6.67265 6.88614 6.96122 7.00340 7.03164 7.33672 7.57058 7.85450 8.09512 8.41696 8.70487 8.93303 9.49438 11.03239 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.005250 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.873186 B = 5332.379301 C = 5933.867426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C 0.127 3.873 4 N -0.558 5.558 5 C 0.213 3.787 6 C -0.531 4.531 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.557 3.443 15 O -0.523 6.523 16 C 0.183 3.817 17 C -0.213 4.213 18 C 0.185 3.815 19 N -0.564 5.564 20 C 0.488 3.512 21 O -0.287 6.287 22 C 0.045 3.955 23 N -0.488 5.488 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.164 0.836 33 H 0.178 0.822 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -14.885 -13.562 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.150 4.150 3 C 0.004 3.996 4 N -0.286 5.286 5 C 0.093 3.907 6 C -0.570 4.570 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.340 3.660 15 O -0.399 6.399 16 C 0.035 3.965 17 C -0.236 4.236 18 C 0.019 3.981 19 N -0.294 5.294 20 C 0.186 3.814 21 O -0.188 6.188 22 C -0.051 4.051 23 N -0.217 5.217 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.181 0.819 33 H 0.195 0.805 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.428 -14.665 -13.737 20.098 hybrid contribution 0.314 -0.259 1.188 1.256 sum 0.742 -14.924 -12.548 19.512 Atomic orbital electron populations 1.23721 0.95817 1.01364 1.03201 1.23165 0.95575 0.98834 0.97404 1.21171 0.92811 0.94734 0.90862 1.47879 1.13726 1.50797 1.16222 1.19831 0.95949 0.93355 0.81546 1.21288 1.39319 0.91996 1.04379 0.90619 1.24829 0.95181 0.94664 0.98121 1.69895 1.46852 1.04728 1.31906 0.86865 0.80327 0.78949 0.83703 1.19818 1.20996 1.18904 1.17658 0.82886 0.79991 0.85434 1.90778 1.52230 1.59637 1.37234 1.21980 0.90177 0.91826 0.92542 1.22807 0.98240 1.01751 1.00806 1.23001 0.97811 0.90340 0.86958 1.67944 1.02694 1.23258 1.35462 1.20889 0.84719 0.88453 0.87338 1.86123 1.35254 1.75615 1.21798 1.22972 1.01594 0.97968 0.82515 1.68370 1.36068 1.18053 0.99188 0.89160 0.88506 0.88471 0.90025 0.86623 0.94575 0.94197 0.92490 0.81876 0.80488 0.91956 0.92026 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 29.02 0.42 -2.48 16 2 C -0.13 -2.10 8.73 -36.03 -0.31 -2.42 16 3 C 0.13 2.32 5.45 -5.19 -0.03 2.30 16 4 N -0.56 -12.07 2.46 -177.32 -0.44 -12.51 16 5 C 0.21 5.27 4.22 -5.19 -0.02 5.25 16 6 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 7 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 10 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 14 C 0.56 11.73 7.60 -12.05 -0.09 11.64 16 15 O -0.52 -12.45 16.00 5.38 0.09 -12.36 16 16 C 0.18 3.10 6.64 -82.65 -0.55 2.55 16 17 C -0.21 -2.87 9.71 -38.92 -0.38 -3.24 16 18 C 0.18 1.99 11.30 -17.22 -0.19 1.80 16 19 N -0.56 -7.04 9.20 -14.75 -0.14 -7.17 16 20 C 0.49 6.99 8.48 -91.36 -0.77 6.21 16 21 O -0.29 -3.70 10.56 -18.09 -0.19 -3.89 16 22 C 0.05 0.38 10.36 101.05 1.05 1.42 16 23 N -0.49 -7.85 4.95 -11.29 -0.06 -7.91 16 24 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 25 H 0.10 1.34 7.84 -52.49 -0.41 0.92 16 26 H 0.10 1.58 7.58 -52.48 -0.40 1.18 16 27 H 0.08 1.52 7.67 -51.93 -0.40 1.12 16 28 H 0.12 2.09 5.25 -51.95 -0.27 1.82 16 29 H 0.04 0.86 7.13 -51.93 -0.37 0.49 16 30 H 0.04 1.03 6.81 -51.93 -0.35 0.68 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.16 2.04 7.75 -52.49 -0.41 1.63 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -33.74 314.40 -5.53 -39.27 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.31 Total: 0.27 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.33 Total: 9.49 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.15 Total: -54.32 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.10 Total: -16.25 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.74 -5.53 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820224449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.022 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds