Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00210 * 2 1 4 4 N 1.46505 * 109.47127 * 125.00066 * 3 2 1 5 5 C 1.46499 * 119.99688 * 262.87426 * 4 3 2 6 6 C 1.50703 * 109.47026 * 270.00015 * 5 4 3 7 7 H 1.08002 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99917 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99770 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00030 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47119 * 90.00223 * 10 8 6 12 12 H 1.48497 * 109.47075 * 209.99969 * 10 8 6 13 13 H 1.48504 * 109.47374 * 330.00436 * 10 8 6 14 14 C 1.34770 * 120.00026 * 82.87436 * 4 3 2 15 15 O 1.21481 * 120.00218 * 183.12690 * 14 4 3 16 16 C 1.48464 * 120.00219 * 3.13739 * 14 4 3 17 17 C 1.39500 * 120.51974 * 173.25437 * 16 14 4 18 18 C 1.38765 * 118.38906 * 179.71809 * 17 16 14 19 19 N 1.32157 * 119.22041 * 0.27994 * 18 17 16 20 20 C 1.32399 * 120.98011 * 359.97438 * 19 18 17 21 21 O 1.35467 * 119.11691 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99708 * 359.97438 * 21 20 19 23 23 N 1.32111 * 121.76590 * 359.97438 * 20 19 18 24 24 H 1.08008 * 120.00102 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00169 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99834 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47034 * 4.99888 * 3 2 1 28 28 H 1.09000 * 109.47311 * 245.00380 * 3 2 1 29 29 H 1.09000 * 109.47313 * 30.00030 * 5 4 3 30 30 H 1.09005 * 109.47005 * 150.00282 * 5 4 3 31 31 H 0.97005 * 119.99497 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.80518 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.38951 * 180.25048 * 18 17 16 34 34 H 1.08998 * 109.47691 * 300.00571 * 22 21 20 35 35 H 1.08998 * 109.47261 * 60.00515 * 22 21 20 36 36 H 1.09003 * 109.47178 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.6139 2.0044 2.3762 6 6 3.0399 3.4487 2.3170 7 1 3.5429 3.8279 1.4397 8 6 2.7876 4.2862 3.3829 9 7 3.1589 5.5468 3.3309 10 14 1.9170 3.6306 4.9000 11 1 2.9224 3.1149 5.8636 12 1 1.1382 4.7240 5.5350 13 1 0.9983 2.5318 4.5076 14 6 4.1990 0.7377 1.0271 15 8 4.9476 0.7104 1.9835 16 6 4.6119 0.1167 -0.2567 17 6 5.9064 -0.3764 -0.4211 18 6 6.2432 -0.9533 -1.6373 19 7 5.3361 -1.0122 -2.5966 20 6 4.1167 -0.5307 -2.4119 21 8 3.2163 -0.6114 -3.4209 22 6 3.6563 -1.2219 -4.6356 23 7 3.7541 0.0256 -1.2698 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.5328 1.9494 2.5037 30 1 3.1044 1.5151 3.2179 31 1 2.9810 6.1360 4.0807 32 1 6.6278 -0.3144 0.3803 33 1 7.2351 -1.3490 -1.7983 34 1 4.4993 -0.6614 -5.0395 35 1 3.9648 -2.2480 -4.4356 36 1 2.8405 -1.2218 -5.3586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820224449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = 11.072328 kcal Electronic energy + Delta-G solvation = -21517.275387 eV Core-core repulsion = 18196.596834 eV Total energy + Delta-G solvation = -3320.678553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.55713 -40.73447 -39.16557 -37.48034 -35.36429 -34.75464 -33.80339 -32.58195 -30.40027 -28.46431 -27.28376 -26.38138 -25.13031 -23.95359 -21.59184 -20.74265 -19.39717 -19.17781 -19.02866 -17.80456 -17.52431 -17.26664 -16.71194 -16.41537 -15.97147 -15.82979 -15.51586 -14.99829 -14.82020 -14.71395 -14.37887 -14.18921 -13.57816 -13.16387 -13.12316 -12.82643 -12.52974 -12.35281 -12.30981 -12.14627 -11.95478 -11.87746 -11.75278 -11.40494 -10.83678 -10.40206 -10.18092 -9.99511 -9.51240 -8.34845 -6.41305 -0.63750 -0.07851 1.32070 1.37172 1.37974 1.43487 1.47335 1.67246 2.14421 2.31245 2.69245 2.88520 2.99196 3.25734 3.52632 3.82076 4.09332 4.17983 4.25732 4.41739 4.44028 4.54936 4.61776 4.73039 4.74456 4.86147 4.95080 5.03683 5.13871 5.38996 5.43409 5.53470 5.75902 5.95208 6.03575 6.18975 6.43386 6.59385 6.80687 7.04201 7.24301 8.81973 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.005250 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.873186 B = 5332.379301 C = 5933.867426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.131 3.869 4 N -0.569 5.569 5 C 0.224 3.776 6 C -0.540 4.540 7 H 0.028 0.972 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.947 3.053 11 H -0.271 1.271 12 H -0.274 1.274 13 H -0.240 1.240 14 C 0.551 3.449 15 O -0.563 6.563 16 C 0.156 3.844 17 C -0.209 4.209 18 C 0.208 3.792 19 N -0.554 5.554 20 C 0.482 3.518 21 O -0.302 6.302 22 C 0.039 3.961 23 N -0.506 5.506 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.270 0.730 32 H 0.171 0.829 33 H 0.232 0.768 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -17.311 -14.472 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 N -0.297 5.297 5 C 0.102 3.898 6 C -0.578 4.578 7 H 0.047 0.953 8 C -0.182 4.182 9 N -0.582 5.582 10 Si 0.769 3.231 11 H -0.196 1.196 12 H -0.199 1.199 13 H -0.163 1.163 14 C 0.336 3.664 15 O -0.442 6.442 16 C 0.010 3.990 17 C -0.232 4.232 18 C 0.041 3.959 19 N -0.284 5.284 20 C 0.179 3.821 21 O -0.203 6.203 22 C -0.055 4.055 23 N -0.236 5.236 24 H 0.134 0.866 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.127 -17.107 -14.704 22.558 hybrid contribution 0.545 0.485 1.274 1.469 sum 0.418 -16.621 -13.430 21.373 Atomic orbital electron populations 1.23965 0.95086 1.02791 0.99994 1.22916 0.96067 0.97382 1.00281 1.21237 0.92254 0.95871 0.89710 1.47951 1.14917 1.50729 1.16097 1.19493 0.96350 0.90896 0.83050 1.21462 1.39020 0.94371 1.02996 0.95325 1.25807 0.95927 0.94717 1.01765 1.70044 1.48441 1.06360 1.33358 0.85728 0.79441 0.79156 0.78769 1.19617 1.19866 1.16327 1.18265 0.82053 0.79317 0.86725 1.90725 1.53102 1.61244 1.39100 1.21367 0.91913 0.94258 0.91416 1.23017 0.96770 1.01128 1.02305 1.23837 0.99189 0.87900 0.84951 1.68115 1.02166 1.22533 1.35545 1.21013 0.85502 0.88361 0.87188 1.86119 1.35636 1.75932 1.22646 1.23295 1.02989 0.98023 0.81212 1.68087 1.36542 1.19125 0.99826 0.86642 0.88023 0.88676 0.91050 0.86672 0.93081 0.95277 0.92098 0.81163 0.75166 0.91610 0.91308 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 14.32 67.78 0.97 -3.81 16 2 C -0.15 -4.65 8.73 25.65 0.22 -4.43 16 3 C 0.13 4.91 5.45 85.63 0.47 5.38 16 4 N -0.57 -25.47 2.46 -833.21 -2.05 -27.52 16 5 C 0.22 11.29 4.22 85.63 0.36 11.65 16 6 C -0.54 -32.34 9.94 25.60 0.25 -32.09 16 7 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 8 C 0.02 0.97 5.47 84.65 0.46 1.43 16 9 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 10 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 14 C 0.55 24.07 7.60 86.97 0.66 24.73 16 15 O -0.56 -27.89 16.00 -3.66 -0.06 -27.95 16 16 C 0.16 5.35 6.64 41.99 0.28 5.63 16 17 C -0.21 -5.37 9.71 22.70 0.22 -5.15 16 18 C 0.21 3.81 11.30 84.77 0.96 4.77 16 19 N -0.55 -12.33 9.20 -313.47 -2.88 -15.21 16 20 C 0.48 13.14 8.48 180.61 1.53 14.67 16 21 O -0.30 -7.33 10.56 -87.65 -0.93 -8.26 16 22 C 0.04 0.56 10.36 113.37 1.17 1.74 16 23 N -0.51 -16.25 4.95 -302.67 -1.50 -17.75 16 24 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 25 H 0.10 2.60 7.84 -2.91 -0.02 2.58 16 26 H 0.10 3.05 7.58 -2.91 -0.02 3.03 16 27 H 0.07 2.73 7.67 -2.39 -0.02 2.72 16 28 H 0.12 4.32 5.25 -2.44 -0.01 4.31 16 29 H 0.05 2.41 7.13 -2.39 -0.02 2.39 16 30 H 0.03 1.53 6.81 -2.38 -0.02 1.52 16 31 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 32 H 0.17 4.09 7.75 -2.91 -0.02 4.07 16 33 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -77.12 314.40 3.37 -73.76 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.03 Total: 11.46 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 7.56 Total: 24.53 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -6.13 Total: -119.90 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.98 Total: -36.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -77.12 3.37 -73.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820224449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.831 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds