Wall clock time and date at job start Mon Mar 30 2020 01:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39834 * 120.00423 * 2 1 4 4 C 1.38920 * 119.99891 * 179.97438 * 3 2 1 5 5 C 1.38025 * 119.99976 * 180.27784 * 4 3 2 6 6 C 1.38937 * 119.99896 * 359.47193 * 5 4 3 7 7 N 1.39886 * 119.99760 * 180.23331 * 6 5 4 8 8 C 1.34780 * 119.99398 * 213.68020 * 7 6 5 9 9 O 1.21388 * 120.00367 * 5.28383 * 8 7 6 10 10 C 1.49327 * 119.99980 * 185.27656 * 8 7 6 11 11 O 1.21368 * 119.99662 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00346 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99948 * 180.02562 * 12 10 8 14 14 C 1.50707 * 109.46718 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99602 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00153 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99732 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47284 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47456 * 119.99344 * 18 16 14 21 21 H 1.48501 * 109.47171 * 239.99551 * 18 16 14 22 22 C 1.38923 * 119.99311 * 0.55078 * 6 5 4 23 23 C 1.38028 * 120.00342 * 359.70417 * 22 6 5 24 24 H 1.08995 * 109.47647 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46841 * 300.00468 * 1 2 3 26 26 H 1.09009 * 109.46618 * 59.99630 * 1 2 3 27 27 H 0.97008 * 119.99475 * 179.97438 * 2 1 3 28 28 H 1.08005 * 119.99993 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.00254 * 179.70258 * 5 4 3 30 30 H 0.96994 * 120.00747 * 33.68793 * 7 6 5 31 31 H 0.96996 * 119.99427 * 0.02562 * 12 10 8 32 32 H 1.09000 * 109.47290 * 300.00095 * 13 12 10 33 33 H 1.08999 * 109.47096 * 60.00866 * 13 12 10 34 34 H 0.96998 * 119.99987 * 180.02562 * 17 16 14 35 35 H 1.08010 * 119.99961 * 179.68384 * 22 6 5 36 36 H 1.07999 * 120.00161 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1643 1.2109 0.0000 4 6 3.5535 1.2108 0.0005 5 6 4.2437 2.4061 0.0063 6 6 3.5491 3.6094 0.0005 7 7 4.2487 4.8207 0.0015 8 6 3.7414 5.8913 0.6442 9 8 2.7272 5.7801 1.3018 10 6 4.4271 7.2143 0.5475 11 8 5.4410 7.3255 -0.1103 12 7 3.9196 8.2849 1.1897 13 6 4.5921 9.5830 1.0943 14 6 3.8286 10.6044 1.8974 15 1 2.9319 10.3157 2.4256 16 6 4.2743 11.9078 1.9569 17 7 5.3659 12.2595 1.3133 18 14 3.3284 13.1738 2.9529 19 1 2.1455 12.5289 3.5775 20 1 4.2083 13.7275 4.0133 21 1 2.8790 14.2714 2.0593 22 6 2.1599 3.6093 0.0005 23 6 1.4697 2.4140 0.0000 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.9500 -0.8402 0.0004 28 1 4.0934 0.2754 0.0014 29 1 5.3237 2.4060 0.0116 30 1 5.0988 4.8903 -0.4604 31 1 3.1091 8.1960 1.7151 32 1 5.6056 9.4968 1.4862 33 1 4.6313 9.8961 0.0510 34 1 5.6796 13.1764 1.3555 35 1 1.6198 4.5447 0.0011 36 1 0.3897 2.4140 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861502484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:51 Heat of formation + Delta-G solvation = -63.356715 kcal Electronic energy + Delta-G solvation = -20088.291003 eV Core-core repulsion = 16764.384964 eV Total energy + Delta-G solvation = -3323.906038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00719 -40.46136 -39.35846 -37.14885 -36.30780 -34.85502 -34.30496 -31.92959 -30.17099 -29.54343 -27.01539 -25.85047 -24.41287 -23.49693 -22.24126 -21.36364 -20.11648 -18.69471 -18.36265 -18.17050 -17.21534 -17.06581 -16.87548 -16.56811 -15.91662 -15.52416 -15.24380 -15.07448 -14.84239 -14.68108 -14.23848 -14.08566 -13.90545 -13.64037 -13.54092 -12.98674 -12.83354 -12.76159 -12.68349 -12.23528 -12.16432 -11.66008 -11.50350 -10.85694 -10.69244 -10.28092 -10.05166 -9.88915 -8.31744 -8.10478 -6.47799 0.06595 0.48272 0.75668 1.35648 1.44347 1.45371 1.59033 2.12787 2.36423 2.62317 2.78870 2.93308 3.03625 3.47305 3.95850 4.06720 4.40449 4.44134 4.53036 4.59094 4.70295 4.94483 4.97646 4.98150 5.14108 5.17068 5.25426 5.29757 5.40913 5.47683 5.53159 5.77554 5.82838 6.07482 6.38821 6.52282 6.59239 6.80870 6.91557 7.00780 7.25322 8.80237 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039348 B = 0.002911 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.434580 B = 9617.422482 C =10218.813089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.748 5.748 3 C 0.201 3.799 4 C -0.175 4.175 5 C -0.086 4.086 6 C 0.056 3.944 7 N -0.628 5.628 8 C 0.515 3.485 9 O -0.524 6.524 10 C 0.494 3.506 11 O -0.559 6.559 12 N -0.673 5.673 13 C 0.263 3.737 14 C -0.561 4.561 15 H 0.079 0.921 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.983 3.017 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.087 4.087 23 C -0.188 4.188 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.411 0.589 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.427 0.573 31 H 0.413 0.587 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.271 0.729 35 H 0.114 0.886 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 -26.028 -2.868 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.378 5.378 3 C 0.096 3.904 4 C -0.198 4.198 5 C -0.106 4.106 6 C -0.038 4.038 7 N -0.275 5.275 8 C 0.297 3.703 9 O -0.400 6.400 10 C 0.274 3.726 11 O -0.439 6.439 12 N -0.323 5.323 13 C 0.141 3.859 14 C -0.599 4.599 15 H 0.097 0.903 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.107 4.107 23 C -0.211 4.211 24 H 0.116 0.884 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.247 0.753 28 H 0.172 0.828 29 H 0.167 0.833 30 H 0.266 0.734 31 H 0.249 0.751 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.879 -25.799 -2.907 27.131 hybrid contribution 0.112 0.876 0.290 0.930 sum -7.767 -24.923 -2.617 26.236 Atomic orbital electron populations 1.21671 0.79286 1.03866 1.00915 1.44511 1.06358 1.04754 1.82183 1.18009 0.91632 0.86807 0.93907 1.20678 0.91786 0.98659 1.08671 1.20922 1.00822 0.89767 0.99108 1.17757 0.91529 0.84797 1.09679 1.42974 1.24990 1.08231 1.51258 1.20042 0.84965 0.85388 0.79918 1.90731 1.24773 1.84902 1.39601 1.20253 0.85219 0.85913 0.81243 1.90708 1.25522 1.85679 1.41977 1.46155 1.29061 1.09240 1.47888 1.18842 0.92500 0.78343 0.96228 1.21595 1.11803 0.94455 1.32019 0.90275 1.25973 0.95932 1.00666 0.96507 1.70104 1.23681 1.19697 1.42868 0.85128 0.78514 0.77773 0.77936 1.18191 1.20192 1.20197 1.20917 0.92815 0.98689 0.98314 1.20604 1.00244 0.90439 1.09861 0.88398 0.93417 0.93117 0.75338 0.82815 0.83327 0.73400 0.75094 0.97668 0.97703 0.92026 0.86796 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 9.94 127.77 1.27 2.04 16 2 N -0.75 -8.83 5.89 -360.65 -2.13 -10.95 16 3 C 0.20 3.61 6.66 38.19 0.25 3.86 16 4 C -0.18 -2.89 9.89 22.38 0.22 -2.66 16 5 C -0.09 -1.69 9.96 22.39 0.22 -1.46 16 6 C 0.06 1.48 6.28 38.19 0.24 1.72 16 7 N -0.63 -17.98 5.33 -304.72 -1.62 -19.60 16 8 C 0.52 18.24 7.62 87.23 0.66 18.90 16 9 O -0.52 -19.86 14.16 -3.36 -0.05 -19.91 16 10 C 0.49 20.68 7.88 87.23 0.69 21.37 16 11 O -0.56 -25.79 16.48 -3.30 -0.05 -25.84 16 12 N -0.67 -30.39 5.54 -468.25 -2.59 -32.98 16 13 C 0.26 14.29 5.43 85.64 0.46 14.75 16 14 C -0.56 -30.83 9.28 25.60 0.24 -30.60 16 15 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 16 C 0.01 0.53 5.46 84.66 0.46 0.99 16 17 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 18 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.09 -2.37 8.65 22.38 0.19 -2.17 16 23 C -0.19 -4.15 9.30 22.38 0.21 -3.94 16 24 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.05 0.49 7.95 -2.39 -0.02 0.47 16 26 H 0.05 0.48 7.95 -2.38 -0.02 0.47 16 27 H 0.41 2.95 8.84 -92.70 -0.82 2.13 16 28 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.43 10.77 8.30 -92.71 -0.77 10.00 16 31 H 0.41 17.12 7.79 -92.71 -0.72 16.39 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.11 3.53 6.41 -2.91 -0.02 3.51 16 36 H 0.13 2.54 6.72 -2.91 -0.02 2.52 16 Total: -1.00 -69.71 318.30 -0.17 -69.89 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -1.16 Total: 26.44 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.13 Total: 22.80 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.06 Total: -118.00 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.10 Total: -45.75 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.71 -0.17 -69.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861502484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.530 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds