Wall clock time and date at job start Mon Mar 30 2020 01:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46698 * 2 1 4 4 C 1.34781 * 119.99937 * 180.02562 * 3 2 1 5 5 O 1.21585 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00010 * 180.02562 * 4 3 2 7 7 N 1.40099 * 120.00132 * 0.02562 * 6 4 3 8 8 C 1.34777 * 120.00337 * 180.27532 * 7 6 4 9 9 O 1.21613 * 119.99751 * 359.72487 * 8 7 6 10 10 C 1.47432 * 120.00302 * 179.72022 * 8 7 6 11 11 C 1.39217 * 120.28043 * 355.35116 * 10 8 7 12 12 C 1.38220 * 120.09009 * 180.02562 * 11 10 8 13 13 C 1.38833 * 120.67727 * 359.97438 * 12 11 10 14 14 C 1.37588 * 120.56615 * 0.02562 * 13 12 11 15 15 C 1.40709 * 119.88435 * 359.70557 * 14 13 12 16 16 C 1.40893 * 120.32674 * 180.27299 * 15 14 13 17 17 H 1.08002 * 120.00075 * 215.83713 * 16 15 14 18 18 C 1.40279 * 120.00139 * 35.83899 * 16 15 14 19 19 N 1.30629 * 119.99781 * 8.97899 * 18 16 15 20 20 Si 1.86791 * 120.00051 * 188.97519 * 18 16 15 21 21 H 1.48508 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47193 * 120.00265 * 20 18 16 23 23 H 1.48504 * 109.47343 * 240.00371 * 20 18 16 24 24 H 1.09001 * 109.46823 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47345 * 299.99377 * 1 2 3 26 26 H 1.08990 * 109.47345 * 60.00099 * 1 2 3 27 27 H 1.08998 * 109.47526 * 240.00337 * 2 1 3 28 28 H 1.08998 * 109.47224 * 119.99630 * 2 1 3 29 29 H 0.97003 * 120.00371 * 0.02562 * 3 2 1 30 30 H 0.97002 * 120.00273 * 179.97438 * 6 4 3 31 31 H 0.97003 * 120.00185 * 359.97438 * 7 6 4 32 32 H 1.07997 * 119.95943 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.66441 * 179.97438 * 12 11 10 34 34 H 1.07993 * 119.71301 * 179.97438 * 13 12 11 35 35 H 1.08009 * 120.05873 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00237 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1334 0.7035 -0.0005 6 7 3.7925 2.8983 0.0000 7 7 2.8820 3.9631 0.0016 8 6 3.3312 5.2339 -0.0035 9 8 4.5268 5.4562 -0.0044 10 6 2.3730 6.3544 -0.0080 11 6 1.0061 6.1088 -0.1045 12 6 0.1114 7.1624 -0.1089 13 6 0.5599 8.4730 -0.0172 14 6 1.9048 8.7471 0.0793 15 6 2.8361 7.6925 0.0917 16 6 4.2150 7.9623 0.1960 17 1 4.9272 7.3479 -0.3350 18 6 4.6631 9.0288 0.9895 19 7 3.8255 9.6608 1.7676 20 14 6.4573 9.5452 0.9335 21 1 7.1931 8.6759 -0.0197 22 1 6.5519 10.9590 0.4892 23 1 7.0537 9.4107 2.2868 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1186 0.0004 30 1 4.7462 3.0757 0.0000 31 1 1.9284 3.7859 0.0020 32 1 0.6443 5.0938 -0.1768 33 1 -0.9476 6.9640 -0.1844 34 1 -0.1528 9.2843 -0.0225 35 1 2.2447 9.7699 0.1499 36 1 4.1351 10.3985 2.3160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865016195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:13 Heat of formation + Delta-G solvation = -9.707534 kcal Electronic energy + Delta-G solvation = -20956.895869 eV Core-core repulsion = 17635.316234 eV Total energy + Delta-G solvation = -3321.579635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21534 -38.85800 -37.01208 -35.36660 -35.12306 -33.81057 -31.30047 -30.32204 -29.92444 -28.86408 -25.53159 -23.41673 -22.70142 -21.24314 -20.88210 -20.09286 -18.91708 -17.45374 -17.09748 -15.84690 -15.83554 -15.49259 -15.25845 -14.53044 -14.46731 -14.31747 -14.02553 -13.74494 -13.27987 -12.83201 -12.67792 -12.44441 -12.01155 -11.84777 -11.71582 -11.27766 -11.22054 -10.82329 -10.73792 -10.67149 -10.39541 -10.24484 -9.82153 -9.38688 -9.23485 -8.67878 -7.95627 -7.69889 -7.49264 -6.92740 -4.53842 2.14820 2.30071 2.68468 3.05876 3.09327 3.13177 3.15585 3.16043 3.90203 3.95595 4.55445 4.76254 4.91078 5.07329 5.18221 5.45227 5.59436 5.72165 5.72640 5.78123 5.84099 6.13990 6.33321 6.36044 6.75968 6.80451 6.89388 6.96859 7.07969 7.29970 7.43847 7.70712 7.80665 7.86013 8.03509 8.12535 8.49474 8.57450 8.68080 8.75014 9.17779 10.02732 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004874 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.456314 B = 5743.334217 C = 7001.317189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 N -0.748 5.748 4 C 0.710 3.290 5 O -0.589 6.589 6 N -0.527 5.527 7 N -0.551 5.551 8 C 0.568 3.432 9 O -0.531 6.531 10 C -0.258 4.258 11 C -0.058 4.058 12 C -0.240 4.240 13 C -0.094 4.094 14 C -0.141 4.141 15 C 0.150 3.850 16 C -0.420 4.420 17 H 0.112 0.888 18 C 0.069 3.931 19 N -0.788 5.788 20 Si 0.917 3.083 21 H -0.255 1.255 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.393 0.607 30 H 0.441 0.559 31 H 0.409 0.591 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -8.734 -1.988 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.407 5.407 4 C 0.409 3.591 5 O -0.465 6.465 6 N -0.280 5.280 7 N -0.307 5.307 8 C 0.363 3.637 9 O -0.407 6.407 10 C -0.264 4.264 11 C -0.077 4.077 12 C -0.259 4.259 13 C -0.113 4.113 14 C -0.160 4.160 15 C 0.145 3.855 16 C -0.447 4.447 17 H 0.130 0.870 18 C -0.150 4.150 19 N -0.413 5.413 20 Si 0.741 3.259 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.198 1.198 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.287 0.713 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.044 -9.151 -1.807 11.115 hybrid contribution 0.120 0.660 0.236 0.711 sum -5.923 -8.491 -1.571 10.472 Atomic orbital electron populations 1.22031 0.94391 1.03246 1.02778 1.21168 0.93916 0.81600 1.02436 1.45189 1.05346 1.09274 1.80864 1.15681 0.83054 0.81860 0.78469 1.90982 1.54976 1.40788 1.59717 1.44352 1.07002 0.97232 1.79463 1.45321 1.04448 0.99496 1.81402 1.18658 0.89389 0.79824 0.75784 1.90694 1.16652 1.82881 1.50494 1.19110 0.90999 0.91968 1.24352 1.20586 0.92574 0.96437 0.98073 1.20291 0.97200 0.92998 1.15414 1.20825 0.95633 0.95445 0.99440 1.21356 0.91776 0.99242 1.03664 1.17431 0.93707 0.88618 0.85744 1.20397 0.93413 1.09009 1.21915 0.86991 1.26172 1.00779 0.94255 0.93799 1.69708 1.37131 1.16950 1.17471 0.86086 0.81557 0.78812 0.79404 1.17880 1.19756 1.19825 0.90657 0.91812 0.91828 0.91513 0.91512 0.77210 0.71343 0.74934 0.89479 0.88812 0.88834 0.86469 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.03 37.16 0.37 -0.72 16 2 C 0.13 1.29 6.39 -4.04 -0.03 1.27 16 3 N -0.75 -8.88 5.52 -65.23 -0.36 -9.24 16 4 C 0.71 11.30 8.68 -86.92 -0.75 10.54 16 5 O -0.59 -11.15 17.18 5.29 0.09 -11.06 16 6 N -0.53 -8.78 6.26 27.63 0.17 -8.61 16 7 N -0.55 -9.26 6.21 30.44 0.19 -9.07 16 8 C 0.57 12.26 7.84 -12.52 -0.10 12.16 16 9 O -0.53 -13.12 13.36 5.27 0.07 -13.05 16 10 C -0.26 -5.80 5.92 -104.37 -0.62 -6.42 16 11 C -0.06 -1.10 9.52 -39.22 -0.37 -1.47 16 12 C -0.24 -4.61 10.03 -39.37 -0.39 -5.00 16 13 C -0.09 -1.96 10.01 -39.60 -0.40 -2.36 16 14 C -0.14 -3.35 8.62 -38.89 -0.34 -3.69 16 15 C 0.15 3.76 5.48 -106.54 -0.58 3.18 16 16 C -0.42 -10.96 7.78 -37.81 -0.29 -11.26 16 17 H 0.11 3.05 5.73 -52.49 -0.30 2.74 16 18 C 0.07 1.70 5.25 -17.30 -0.09 1.61 16 19 N -0.79 -19.49 11.25 55.56 0.63 -18.87 16 20 Si 0.92 18.94 29.57 -169.99 -5.03 13.92 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.39 3.91 6.39 -40.82 -0.26 3.65 16 30 H 0.44 7.78 8.10 -182.60 -1.48 6.30 16 31 H 0.41 5.56 4.75 -182.60 -0.87 4.69 16 32 H 0.09 1.28 6.42 -52.49 -0.34 0.94 16 33 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 2.85 6.72 -52.48 -0.35 2.50 16 36 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -30.12 309.46 -8.86 -38.98 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.69 Total: 14.50 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.59 Total: -2.16 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.63 Total: -45.79 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.16 Total: -24.11 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.12 -8.86 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865016195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds