Wall clock time and date at job start Mon Mar 30 2020 01:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46698 * 2 1 4 4 C 1.34781 * 119.99937 * 180.02562 * 3 2 1 5 5 O 1.21585 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00010 * 180.02562 * 4 3 2 7 7 N 1.40099 * 120.00132 * 0.02562 * 6 4 3 8 8 C 1.34777 * 120.00337 * 180.27532 * 7 6 4 9 9 O 1.21613 * 119.99751 * 359.72487 * 8 7 6 10 10 C 1.47432 * 120.00302 * 179.72022 * 8 7 6 11 11 C 1.39217 * 120.28043 * 355.35116 * 10 8 7 12 12 C 1.38220 * 120.09009 * 180.02562 * 11 10 8 13 13 C 1.38833 * 120.67727 * 359.97438 * 12 11 10 14 14 C 1.37588 * 120.56615 * 0.02562 * 13 12 11 15 15 C 1.40709 * 119.88435 * 359.70557 * 14 13 12 16 16 C 1.40893 * 120.32674 * 180.27299 * 15 14 13 17 17 H 1.08002 * 120.00075 * 215.83713 * 16 15 14 18 18 C 1.40279 * 120.00139 * 35.83899 * 16 15 14 19 19 N 1.30629 * 119.99781 * 8.97899 * 18 16 15 20 20 Si 1.86791 * 120.00051 * 188.97519 * 18 16 15 21 21 H 1.48508 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47193 * 120.00265 * 20 18 16 23 23 H 1.48504 * 109.47343 * 240.00371 * 20 18 16 24 24 H 1.09001 * 109.46823 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47345 * 299.99377 * 1 2 3 26 26 H 1.08990 * 109.47345 * 60.00099 * 1 2 3 27 27 H 1.08998 * 109.47526 * 240.00337 * 2 1 3 28 28 H 1.08998 * 109.47224 * 119.99630 * 2 1 3 29 29 H 0.97003 * 120.00371 * 0.02562 * 3 2 1 30 30 H 0.97002 * 120.00273 * 179.97438 * 6 4 3 31 31 H 0.97003 * 120.00185 * 359.97438 * 7 6 4 32 32 H 1.07997 * 119.95943 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.66441 * 179.97438 * 12 11 10 34 34 H 1.07993 * 119.71301 * 179.97438 * 13 12 11 35 35 H 1.08009 * 120.05873 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00237 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1334 0.7035 -0.0005 6 7 3.7925 2.8983 0.0000 7 7 2.8820 3.9631 0.0016 8 6 3.3312 5.2339 -0.0035 9 8 4.5268 5.4562 -0.0044 10 6 2.3730 6.3544 -0.0080 11 6 1.0061 6.1088 -0.1045 12 6 0.1114 7.1624 -0.1089 13 6 0.5599 8.4730 -0.0172 14 6 1.9048 8.7471 0.0793 15 6 2.8361 7.6925 0.0917 16 6 4.2150 7.9623 0.1960 17 1 4.9272 7.3479 -0.3350 18 6 4.6631 9.0288 0.9895 19 7 3.8255 9.6608 1.7676 20 14 6.4573 9.5452 0.9335 21 1 7.1931 8.6759 -0.0197 22 1 6.5519 10.9590 0.4892 23 1 7.0537 9.4107 2.2868 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1186 0.0004 30 1 4.7462 3.0757 0.0000 31 1 1.9284 3.7859 0.0020 32 1 0.6443 5.0938 -0.1768 33 1 -0.9476 6.9640 -0.1844 34 1 -0.1528 9.2843 -0.0225 35 1 2.2447 9.7699 0.1499 36 1 4.1351 10.3985 2.3160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865016195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:12 Heat of formation + Delta-G solvation = -31.022203 kcal Electronic energy + Delta-G solvation = -20957.820143 eV Core-core repulsion = 17635.316234 eV Total energy + Delta-G solvation = -3322.503909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58499 -40.43088 -38.65783 -36.71986 -36.34165 -35.54769 -32.83624 -31.72451 -31.22787 -30.31815 -27.28712 -24.38896 -24.21082 -22.85188 -22.13573 -21.64920 -20.27906 -19.16610 -18.59776 -17.34131 -17.05515 -16.98574 -16.62214 -15.94499 -15.85431 -15.77425 -15.39808 -15.02453 -14.97598 -14.50687 -14.10658 -13.51454 -13.27437 -12.95700 -12.87527 -12.65536 -12.53500 -12.45276 -12.35318 -12.24785 -11.95274 -11.75994 -11.48350 -11.14659 -10.43008 -10.30302 -9.54943 -9.25726 -9.17352 -8.69292 -6.38820 0.45148 0.88955 1.02072 1.35488 1.48119 1.50390 1.84486 2.00634 2.21309 2.28550 2.78067 3.68552 3.73509 4.12428 4.23915 4.27473 4.35602 4.55476 4.60319 4.84632 4.92741 5.08423 5.10446 5.23347 5.27979 5.32103 5.36809 5.43148 5.61949 5.63663 5.80509 6.05014 6.11667 6.32851 6.43165 6.71451 6.75585 6.88656 6.97356 7.24829 7.58945 8.28371 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004874 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.456314 B = 5743.334217 C = 7001.317189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 N -0.732 5.732 4 C 0.710 3.290 5 O -0.620 6.620 6 N -0.532 5.532 7 N -0.526 5.526 8 C 0.566 3.434 9 O -0.569 6.569 10 C -0.271 4.271 11 C -0.052 4.052 12 C -0.228 4.228 13 C -0.090 4.090 14 C -0.173 4.173 15 C 0.121 3.879 16 C -0.464 4.464 17 H 0.088 0.912 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.256 1.256 23 H -0.269 1.269 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.405 0.595 30 H 0.434 0.566 31 H 0.427 0.573 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 -10.085 -2.153 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.003 3.997 3 N -0.390 5.390 4 C 0.409 3.591 5 O -0.498 6.498 6 N -0.284 5.284 7 N -0.282 5.282 8 C 0.360 3.640 9 O -0.448 6.448 10 C -0.277 4.277 11 C -0.071 4.071 12 C -0.247 4.247 13 C -0.108 4.108 14 C -0.192 4.192 15 C 0.117 3.883 16 C -0.492 4.492 17 H 0.106 0.894 18 C -0.181 4.181 19 N -0.445 5.445 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.180 1.180 23 H -0.194 1.194 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.242 0.758 30 H 0.278 0.722 31 H 0.272 0.728 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.116 -10.529 -1.975 14.066 hybrid contribution 0.815 0.879 0.232 1.221 sum -8.301 -9.650 -1.743 12.848 Atomic orbital electron populations 1.21997 0.91410 1.04618 1.03475 1.21400 0.96264 0.80094 1.01943 1.45201 1.03847 1.10795 1.79175 1.15821 0.84146 0.80927 0.78227 1.90961 1.56259 1.41441 1.61142 1.44437 1.06755 0.97334 1.79916 1.44815 1.05243 0.98460 1.79650 1.18635 0.88747 0.81057 0.75528 1.90686 1.18259 1.83769 1.52106 1.19424 0.92997 0.91396 1.23914 1.21079 0.90783 0.99312 0.95916 1.20846 0.99485 0.91945 1.12432 1.21225 0.94739 0.97552 0.97304 1.21276 0.93233 0.98203 1.06501 1.17786 0.93858 0.90373 0.86291 1.20326 0.93940 1.10640 1.24341 0.89392 1.26743 1.04071 0.94047 0.93207 1.69726 1.38419 1.17891 1.18491 0.85257 0.77272 0.78825 0.78976 1.19413 1.17983 1.19362 0.89021 0.91143 0.90991 0.92003 0.92151 0.75806 0.72154 0.72767 0.84303 0.84382 0.86132 0.88431 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.03 71.98 0.72 -0.74 16 2 C 0.13 2.14 6.39 86.38 0.55 2.69 16 3 N -0.73 -15.42 5.52 -478.54 -2.64 -18.06 16 4 C 0.71 21.61 8.68 179.05 1.55 23.16 16 5 O -0.62 -23.16 17.18 -3.98 -0.07 -23.23 16 6 N -0.53 -17.28 6.26 -184.75 -1.16 -18.44 16 7 N -0.53 -16.71 6.21 -175.87 -1.09 -17.80 16 8 C 0.57 24.33 7.84 86.67 0.68 25.01 16 9 O -0.57 -29.16 13.36 -4.07 -0.05 -29.21 16 10 C -0.27 -11.98 5.92 -19.70 -0.12 -12.10 16 11 C -0.05 -1.79 9.52 22.50 0.21 -1.57 16 12 C -0.23 -7.71 10.03 22.41 0.22 -7.48 16 13 C -0.09 -3.51 10.01 22.26 0.22 -3.29 16 14 C -0.17 -8.31 8.62 22.72 0.20 -8.11 16 15 C 0.12 6.24 5.48 -21.11 -0.12 6.13 16 16 C -0.46 -25.58 7.78 23.42 0.18 -25.39 16 17 H 0.09 5.14 5.73 -2.91 -0.02 5.12 16 18 C 0.03 1.79 5.25 85.37 0.45 2.24 16 19 N -0.82 -42.18 11.25 21.88 0.25 -41.93 16 20 Si 0.97 40.70 29.57 68.60 2.03 42.73 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.41 6.47 6.39 -92.71 -0.59 5.87 16 30 H 0.43 15.52 8.10 -213.32 -1.73 13.79 16 31 H 0.43 10.02 4.75 -213.32 -1.01 9.00 16 32 H 0.14 3.22 6.42 -2.91 -0.02 3.20 16 33 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.10 4.97 6.72 -2.91 -0.02 4.95 16 36 H 0.29 13.46 8.29 -92.71 -0.77 12.70 16 Total: -1.00 -69.47 309.46 -0.16 -69.62 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -2.18 Total: 35.79 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.76 Total: 0.53 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -4.64 Total: -96.23 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.12 Total: -52.44 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -69.47 -0.16 -69.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865016195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.602 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds