Wall clock time and date at job start Mon Mar 30 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99874 * 2 1 4 4 N 1.34773 * 119.99963 * 179.97438 * 2 1 3 5 5 C 1.39274 * 119.99969 * 185.51222 * 4 2 1 6 6 C 1.39479 * 120.55755 * 25.06694 * 5 4 2 7 7 C 1.38269 * 118.43312 * 180.02562 * 6 5 4 8 8 C 1.38784 * 119.45520 * 0.25310 * 7 6 5 9 9 N 1.31377 * 121.09711 * 359.47303 * 8 7 6 10 10 C 1.32848 * 121.71445 * 0.53675 * 9 8 7 11 11 C 1.47810 * 119.79614 * 179.70420 * 10 9 8 12 12 O 1.21553 * 120.00082 * 185.29815 * 11 10 9 13 13 N 1.34780 * 120.00167 * 5.30093 * 11 10 9 14 14 C 1.46494 * 120.00375 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.46828 * 324.99713 * 14 13 11 16 16 C 1.53001 * 109.47520 * 84.99727 * 14 13 11 17 17 C 1.50699 * 109.47200 * 204.99913 * 14 13 11 18 18 H 1.07997 * 120.00335 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99749 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00490 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99891 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47290 * 89.99618 * 21 19 17 23 23 H 1.48500 * 109.47108 * 210.00117 * 21 19 17 24 24 H 1.48506 * 109.47109 * 329.99661 * 21 19 17 25 25 H 1.09003 * 109.47378 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46978 * 300.00506 * 1 2 3 27 27 H 1.08996 * 109.47102 * 60.00251 * 1 2 3 28 28 H 0.97004 * 119.99917 * 5.51695 * 4 2 1 29 29 H 1.08012 * 120.78601 * 0.02562 * 6 5 4 30 30 H 1.08001 * 120.27425 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.44900 * 179.74755 * 8 7 6 32 32 H 0.97006 * 119.99812 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47545 * 180.02562 * 16 14 13 34 34 H 1.09002 * 109.46890 * 300.00447 * 16 14 13 35 35 H 1.09006 * 109.47081 * 60.00141 * 16 14 13 36 36 H 0.96999 * 120.00440 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5688 -1.1699 0.1164 6 6 4.2309 -0.1088 0.7337 7 6 5.6098 -0.1566 0.8243 8 6 6.2909 -1.2458 0.2991 9 7 5.6466 -2.2371 -0.2738 10 6 4.3228 -2.2377 -0.3853 11 6 3.6417 -3.3723 -1.0438 12 8 2.4418 -3.3333 -1.2342 13 7 4.3511 -4.4503 -1.4329 14 6 3.6760 -5.5751 -2.0850 15 1 2.6815 -5.6998 -1.6564 16 6 3.5539 -5.2968 -3.5845 17 6 4.4767 -6.8338 -1.8712 18 1 5.3962 -6.7994 -1.3058 19 6 4.0347 -8.0295 -2.3966 20 7 2.9142 -8.0717 -3.0838 21 14 5.0267 -9.5898 -2.1310 22 1 4.5758 -10.2568 -0.8832 23 1 4.8260 -10.5060 -3.2824 24 1 6.4672 -9.2471 -2.0164 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6992 -2.0053 -0.0799 29 1 3.6796 0.7305 1.1315 30 1 6.1527 0.6491 1.2959 31 1 7.3682 -1.2811 0.3663 32 1 5.3087 -4.4813 -1.2812 33 1 3.0512 -6.1335 -4.0696 34 1 2.9748 -4.3864 -3.7391 35 1 4.5484 -5.1721 -4.0131 36 1 2.6035 -8.9128 -3.4538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865053088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:30 Heat of formation + Delta-G solvation = -56.572913 kcal Electronic energy + Delta-G solvation = -21185.073908 eV Core-core repulsion = 17861.462037 eV Total energy + Delta-G solvation = -3323.611871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24561 -40.57389 -39.80971 -36.98447 -36.03045 -34.39096 -33.37318 -32.19611 -30.82072 -29.71384 -27.35712 -25.84094 -24.68755 -23.06620 -21.80192 -21.29931 -19.62966 -18.99508 -18.21936 -17.91154 -17.45011 -16.90928 -16.44687 -16.14702 -16.04121 -15.77267 -15.31325 -14.77772 -14.63634 -14.39099 -14.19257 -13.75346 -13.65512 -13.36778 -13.18006 -12.99988 -12.89795 -12.77372 -12.28516 -12.19514 -12.13178 -11.41771 -11.17643 -11.13588 -10.74463 -10.60727 -10.36841 -9.87565 -9.35298 -8.18395 -6.35342 -0.43832 0.13568 1.45758 1.46125 1.46240 1.57176 1.76227 2.02952 2.26868 2.48703 2.85719 3.12175 3.26895 3.61491 3.74696 3.88639 4.04192 4.23832 4.43544 4.48264 4.59299 4.71548 4.86154 4.90030 4.99116 5.05542 5.08784 5.19094 5.38382 5.55404 5.63302 5.67234 5.84820 6.05928 6.29513 6.64780 6.69774 6.89291 6.94545 7.25901 7.41266 8.87945 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.004527 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.312085 B = 6183.548845 C = 7074.476472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.565 6.565 4 N -0.656 5.656 5 C 0.146 3.854 6 C -0.112 4.112 7 C -0.107 4.107 8 C 0.074 3.926 9 N -0.455 5.455 10 C 0.018 3.982 11 C 0.556 3.444 12 O -0.582 6.582 13 N -0.680 5.680 14 C 0.269 3.731 15 H 0.011 0.989 16 C -0.133 4.133 17 C -0.549 4.549 18 H 0.069 0.931 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.427 0.573 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.202 0.798 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.014 0.986 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 15.301 8.958 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.444 6.444 4 N -0.306 5.306 5 C 0.045 3.955 6 C -0.140 4.140 7 C -0.127 4.127 8 C -0.088 4.088 9 N -0.166 5.166 10 C -0.121 4.121 11 C 0.343 3.657 12 O -0.465 6.465 13 N -0.326 5.326 14 C 0.166 3.834 15 H 0.029 0.971 16 C -0.192 4.192 17 C -0.587 4.587 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.187 1.187 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.273 0.727 29 H 0.179 0.821 30 H 0.204 0.796 31 H 0.219 0.781 32 H 0.244 0.756 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.054 0.946 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.960 15.106 8.341 17.367 hybrid contribution -0.094 -0.739 0.112 0.753 sum 1.866 14.368 8.453 16.774 Atomic orbital electron populations 1.21925 0.86906 1.06315 1.07051 1.21940 0.92898 0.81981 0.73407 1.90625 1.71457 1.32267 1.50068 1.44344 1.04635 1.12326 1.69324 1.18973 0.85200 0.95710 0.95659 1.22038 0.96049 0.98133 0.97801 1.22759 0.93333 0.99683 0.96952 1.23481 1.02298 0.88624 0.94414 1.67516 1.06838 1.28601 1.13640 1.20768 0.90773 0.96350 1.04205 1.18233 0.86280 0.82643 0.78567 1.90458 1.15308 1.81127 1.59579 1.46187 1.12448 1.16826 1.57158 1.18495 0.92584 0.82844 0.89451 0.97091 1.21901 0.99186 0.99187 0.98905 1.21494 1.09170 0.92724 1.35345 0.91326 1.25741 0.96034 1.02235 0.94153 1.70025 1.22270 1.27533 1.35425 0.85348 0.79122 0.78256 0.77639 1.20190 1.20738 1.18726 0.88891 0.85979 0.87139 0.72729 0.82114 0.79572 0.78119 0.75594 0.90974 0.96692 0.94564 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.39 71.24 0.74 -1.91 16 2 C 0.51 13.24 7.75 87.66 0.68 13.92 16 3 O -0.56 -17.34 14.31 -3.02 -0.04 -17.39 16 4 N -0.66 -19.64 4.85 -302.68 -1.47 -21.11 16 5 C 0.15 4.62 6.44 38.69 0.25 4.87 16 6 C -0.11 -2.86 8.81 22.58 0.20 -2.66 16 7 C -0.11 -2.00 10.10 22.41 0.23 -1.77 16 8 C 0.07 1.58 11.17 84.89 0.95 2.53 16 9 N -0.45 -14.01 9.55 -184.54 -1.76 -15.77 16 10 C 0.02 0.63 6.76 41.96 0.28 0.91 16 11 C 0.56 23.75 7.75 86.78 0.67 24.43 16 12 O -0.58 -26.67 13.45 -3.88 -0.05 -26.72 16 13 N -0.68 -30.53 5.06 -449.02 -2.27 -32.80 16 14 C 0.27 14.14 2.56 44.25 0.11 14.25 16 15 H 0.01 0.67 7.58 -2.38 -0.02 0.65 16 16 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 17 C -0.55 -29.54 8.73 25.60 0.22 -29.32 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 19 C 0.02 1.01 5.30 84.66 0.45 1.46 16 20 N -0.91 -51.82 11.32 21.45 0.24 -51.58 16 21 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 H 0.09 1.35 7.92 -2.39 -0.02 1.34 16 26 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.43 13.44 5.85 -92.71 -0.54 12.90 16 29 H 0.16 4.01 5.92 -2.90 -0.02 3.99 16 30 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.41 16.98 7.88 -92.70 -0.73 16.25 16 33 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 34 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.27 14.26 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -69.50 310.38 1.99 -67.51 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.14 Total: 33.21 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.45 Total: 20.54 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.26 Total: -121.26 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.10 Total: -44.11 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.50 1.99 -67.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865053088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.941 kcal (2) G-P(sol) polarization free energy of solvation -69.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds