Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47266 * 296.48291 * 3 2 1 5 5 C 1.36985 * 119.99870 * 95.73088 * 4 3 2 6 6 H 1.07999 * 119.99411 * 227.98762 * 5 4 3 7 7 C 1.38968 * 120.00193 * 48.25634 * 5 4 3 8 8 N 1.31416 * 119.99857 * 2.77695 * 7 5 4 9 9 Si 1.86801 * 120.00323 * 182.77233 * 7 5 4 10 10 H 1.48503 * 109.46763 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47536 * 120.00088 * 9 7 5 12 12 H 1.48501 * 109.47071 * 240.00556 * 9 7 5 13 13 C 1.34779 * 120.00134 * 275.72774 * 4 3 2 14 14 O 1.21622 * 119.99930 * 182.64420 * 13 4 3 15 15 C 1.47352 * 119.99762 * 2.64048 * 13 4 3 16 16 C 1.41322 * 126.42324 * 8.23778 * 15 13 4 17 17 N 1.30451 * 108.02677 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.91223 * 359.97438 * 17 16 15 19 19 C 1.46503 * 125.74798 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47283 * 304.98349 * 19 18 17 21 21 O 1.42902 * 109.46970 * 179.97438 * 20 19 18 22 22 C 1.42905 * 113.99661 * 179.97438 * 21 20 19 23 23 C 1.34288 * 108.49700 * 359.76987 * 18 17 16 24 24 H 4.40641 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46680 * 176.48755 * 3 2 1 26 26 H 1.08994 * 109.47035 * 56.48845 * 3 2 1 27 27 H 0.96997 * 120.00124 * 179.97438 * 8 7 5 28 28 H 1.07992 * 125.98684 * 359.94172 * 16 15 13 29 29 H 1.08997 * 109.46780 * 64.97719 * 19 18 17 30 30 H 1.08998 * 109.47185 * 184.97971 * 19 18 17 31 31 H 1.09003 * 109.46849 * 299.99856 * 20 19 18 32 32 H 1.08998 * 109.47319 * 59.99704 * 20 19 18 33 33 H 1.08993 * 109.46782 * 299.99768 * 22 21 20 34 34 H 1.08997 * 109.46913 * 60.00350 * 22 21 20 35 35 H 1.09003 * 109.46505 * 179.97438 * 22 21 20 36 36 H 1.08002 * 126.29124 * 180.24977 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6150 1.2363 5 6 3.4752 -1.9418 1.2525 6 1 3.1089 -2.5836 2.0400 7 6 4.2967 -2.4605 0.2589 8 7 4.7911 -1.6677 -0.6653 9 14 4.6983 -4.2847 0.2368 10 1 4.0223 -4.9541 1.3771 11 1 4.2243 -4.8807 -1.0380 12 1 6.1671 -4.4696 0.3537 13 6 3.2491 0.1239 2.3576 14 8 3.7000 -0.3749 3.3711 15 6 2.8281 1.5360 2.3556 16 6 2.1422 2.2056 1.3172 17 7 1.9496 3.4404 1.6912 18 7 2.4942 3.6177 2.9680 19 6 2.4836 4.8644 3.7374 20 6 3.1128 5.9831 2.9046 21 8 3.1019 7.1992 3.6549 22 6 3.6709 8.3134 2.9642 23 6 3.0241 2.4514 3.3709 24 1 -1.0499 0.0001 0.0003 25 1 3.0088 1.0266 -0.0630 26 1 3.0096 -0.5665 -0.8568 27 1 5.3647 -2.0296 -1.3586 28 1 1.8323 1.7713 0.3782 29 1 1.4558 5.1298 3.9849 30 1 3.0552 4.7295 4.6556 31 1 4.1406 5.7176 2.6570 32 1 2.5412 6.1180 1.9864 33 1 4.7104 8.0962 2.7187 34 1 3.1114 8.4964 2.0469 35 1 3.6244 9.1974 3.6003 36 1 3.5153 2.2645 4.3144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868040586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = 87.496682 kcal Electronic energy + Delta-G solvation = -20944.715479 eV Core-core repulsion = 17627.350935 eV Total energy + Delta-G solvation = -3317.364544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00588 -38.39093 -37.99608 -35.21183 -33.82130 -32.60687 -31.20413 -29.99571 -29.07190 -26.85903 -26.29812 -24.83982 -23.47490 -21.72691 -20.47274 -19.14299 -18.01466 -17.35671 -16.62678 -16.45960 -16.09990 -15.55802 -15.39838 -14.97022 -14.59118 -14.19904 -13.89665 -13.74598 -13.42997 -12.78611 -12.63962 -12.43603 -12.13501 -11.82516 -11.60318 -11.46257 -11.18697 -10.99767 -10.73626 -10.59553 -10.30733 -10.00062 -9.76502 -9.60888 -9.17813 -8.83991 -8.51721 -8.15566 -7.46618 -6.32476 -4.11392 1.98970 2.43162 2.77186 3.20827 3.27602 3.32420 3.39528 3.50506 3.60232 4.16963 4.48962 4.49530 4.70077 4.90648 4.95467 5.03395 5.05280 5.06192 5.18416 5.31577 5.34531 5.35906 5.46820 5.53139 5.86892 5.95319 6.16634 6.38372 6.63675 6.72741 6.88733 7.01140 7.16092 7.56447 7.92360 8.24134 8.36289 8.51860 9.17457 9.31777 9.99837 10.73528 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.004060 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.133655 B = 6894.142134 C = 7201.872354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.172 4.172 3 C 0.186 3.814 4 N -0.434 5.434 5 C -0.301 4.301 6 H 0.087 0.913 7 C 0.040 3.960 8 N -0.881 5.881 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.548 3.452 14 O -0.576 6.576 15 C -0.259 4.259 16 C 0.058 3.942 17 N -0.311 5.311 18 N -0.373 5.373 19 C 0.139 3.861 20 C 0.051 3.949 21 O -0.392 6.392 22 C 0.034 3.966 23 C 0.106 3.894 24 H 0.209 0.791 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.270 0.730 28 H 0.211 0.789 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 14.374 2.415 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.174 4.174 3 C 0.063 3.937 4 N -0.152 5.152 5 C -0.429 4.429 6 H 0.105 0.895 7 C -0.164 4.164 8 N -0.519 5.519 9 Si 0.752 3.248 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.337 3.663 14 O -0.460 6.460 15 C -0.273 4.273 16 C -0.128 4.128 17 N -0.131 5.131 18 N -0.155 5.155 19 C 0.017 3.983 20 C -0.027 4.027 21 O -0.311 6.311 22 C -0.062 4.062 23 C -0.043 4.043 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.151 0.849 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.882 15.363 2.703 16.075 hybrid contribution 0.467 -1.544 -0.248 1.632 sum -3.416 13.820 2.455 14.446 Atomic orbital electron populations 1.24709 0.95700 1.02673 1.02390 1.24407 0.95652 0.98448 0.98888 1.19263 0.80987 0.99708 0.93736 1.43004 1.56308 1.09148 1.06755 1.19403 1.27834 0.83465 1.12226 0.89510 1.25580 0.94358 1.00152 0.96272 1.69703 1.31972 1.35416 1.14777 0.85879 0.78419 0.82296 0.78202 1.19156 1.20697 1.20549 1.17421 0.80513 0.83310 0.85097 1.90601 1.49404 1.72997 1.32958 1.20773 1.12775 0.97500 0.96295 1.25481 0.96309 0.90475 1.00549 1.77077 1.21696 1.19827 0.94501 1.48218 1.44782 1.08392 1.14105 1.21330 1.03454 0.80434 0.93038 1.22694 1.00702 0.84276 0.95002 1.87767 1.82747 1.17877 1.42664 1.22760 0.97287 0.88707 0.97466 1.22868 0.96892 0.84813 0.99717 0.77414 0.89562 0.84880 0.92021 0.77290 0.88935 0.87772 0.92521 0.91481 0.93832 0.93779 0.89360 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.16 19.25 29.55 0.57 -3.59 16 2 C -0.17 -3.49 10.66 -37.12 -0.40 -3.88 16 3 C 0.19 4.16 4.93 -6.83 -0.03 4.13 16 4 N -0.43 -11.25 2.45 -119.18 -0.29 -11.54 16 5 C -0.30 -8.38 8.78 -14.98 -0.13 -8.51 16 6 H 0.09 2.50 7.83 -52.49 -0.41 2.09 16 7 C 0.04 1.06 5.24 -17.46 -0.09 0.97 16 8 N -0.88 -23.35 11.28 55.50 0.63 -22.73 16 9 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 C 0.55 14.01 7.56 -12.55 -0.09 13.92 16 14 O -0.58 -16.38 16.87 5.26 0.09 -16.29 16 15 C -0.26 -5.44 5.94 -105.07 -0.62 -6.06 16 16 C 0.06 1.10 9.23 -16.97 -0.16 0.95 16 17 N -0.31 -5.46 12.33 30.87 0.38 -5.08 16 18 N -0.37 -5.75 3.65 -60.78 -0.22 -5.97 16 19 C 0.14 1.56 6.86 -4.04 -0.03 1.54 16 20 C 0.05 0.55 6.11 37.16 0.23 0.78 16 21 O -0.39 -4.13 10.70 -35.23 -0.38 -4.51 16 22 C 0.03 0.26 11.01 101.05 1.11 1.37 16 23 C 0.11 1.84 11.26 -16.53 -0.19 1.65 16 24 H 0.21 2.78 7.80 -54.10 -0.42 2.36 16 25 H 0.09 1.78 4.99 -51.93 -0.26 1.53 16 26 H 0.13 3.20 5.77 -51.93 -0.30 2.90 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.21 3.89 3.23 -52.49 -0.17 3.72 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 0.94 8.06 -51.93 -0.42 0.52 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -32.79 317.90 -3.94 -36.72 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.07 Total: 5.61 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 0.17 Total: 3.27 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.49 Total: -45.32 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.29 Total: -20.80 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.79 -3.94 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.221 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds