Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47266 * 296.48291 * 3 2 1 5 5 C 1.36985 * 119.99870 * 95.73088 * 4 3 2 6 6 H 1.07999 * 119.99411 * 227.98762 * 5 4 3 7 7 C 1.38968 * 120.00193 * 48.25634 * 5 4 3 8 8 N 1.31416 * 119.99857 * 2.77695 * 7 5 4 9 9 Si 1.86801 * 120.00323 * 182.77233 * 7 5 4 10 10 H 1.48503 * 109.46763 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47536 * 120.00088 * 9 7 5 12 12 H 1.48501 * 109.47071 * 240.00556 * 9 7 5 13 13 C 1.34779 * 120.00134 * 275.72774 * 4 3 2 14 14 O 1.21622 * 119.99930 * 182.64420 * 13 4 3 15 15 C 1.47352 * 119.99762 * 2.64048 * 13 4 3 16 16 C 1.41322 * 126.42324 * 8.23778 * 15 13 4 17 17 N 1.30451 * 108.02677 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.91223 * 359.97438 * 17 16 15 19 19 C 1.46503 * 125.74798 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47283 * 304.98349 * 19 18 17 21 21 O 1.42902 * 109.46970 * 179.97438 * 20 19 18 22 22 C 1.42905 * 113.99661 * 179.97438 * 21 20 19 23 23 C 1.34288 * 108.49700 * 359.76987 * 18 17 16 24 24 H 4.40641 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46680 * 176.48755 * 3 2 1 26 26 H 1.08994 * 109.47035 * 56.48845 * 3 2 1 27 27 H 0.96997 * 120.00124 * 179.97438 * 8 7 5 28 28 H 1.07992 * 125.98684 * 359.94172 * 16 15 13 29 29 H 1.08997 * 109.46780 * 64.97719 * 19 18 17 30 30 H 1.08998 * 109.47185 * 184.97971 * 19 18 17 31 31 H 1.09003 * 109.46849 * 299.99856 * 20 19 18 32 32 H 1.08998 * 109.47319 * 59.99704 * 20 19 18 33 33 H 1.08993 * 109.46782 * 299.99768 * 22 21 20 34 34 H 1.08997 * 109.46913 * 60.00350 * 22 21 20 35 35 H 1.09003 * 109.46505 * 179.97438 * 22 21 20 36 36 H 1.08002 * 126.29124 * 180.24977 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6150 1.2363 5 6 3.4752 -1.9418 1.2525 6 1 3.1089 -2.5836 2.0400 7 6 4.2967 -2.4605 0.2589 8 7 4.7911 -1.6677 -0.6653 9 14 4.6983 -4.2847 0.2368 10 1 4.0223 -4.9541 1.3771 11 1 4.2243 -4.8807 -1.0380 12 1 6.1671 -4.4696 0.3537 13 6 3.2491 0.1239 2.3576 14 8 3.7000 -0.3749 3.3711 15 6 2.8281 1.5360 2.3556 16 6 2.1422 2.2056 1.3172 17 7 1.9496 3.4404 1.6912 18 7 2.4942 3.6177 2.9680 19 6 2.4836 4.8644 3.7374 20 6 3.1128 5.9831 2.9046 21 8 3.1019 7.1992 3.6549 22 6 3.6709 8.3134 2.9642 23 6 3.0241 2.4514 3.3709 24 1 -1.0499 0.0001 0.0003 25 1 3.0088 1.0266 -0.0630 26 1 3.0096 -0.5665 -0.8568 27 1 5.3647 -2.0296 -1.3586 28 1 1.8323 1.7713 0.3782 29 1 1.4558 5.1298 3.9849 30 1 3.0552 4.7295 4.6556 31 1 4.1406 5.7176 2.6570 32 1 2.5412 6.1180 1.9864 33 1 4.7104 8.0962 2.7187 34 1 3.1114 8.4964 2.0469 35 1 3.6244 9.1974 3.6003 36 1 3.5153 2.2645 4.3144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868040586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = 65.130446 kcal Electronic energy + Delta-G solvation = -20945.685352 eV Core-core repulsion = 17627.350935 eV Total energy + Delta-G solvation = -3318.334417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43534 -40.06797 -38.94918 -37.10153 -35.15334 -34.22229 -33.03480 -31.37473 -30.33589 -28.40011 -27.29314 -26.63716 -24.55581 -23.33903 -21.78127 -20.78988 -19.73409 -18.77495 -18.06212 -17.42010 -17.38845 -17.10044 -16.70484 -16.37406 -15.93445 -15.82399 -15.50093 -15.15723 -14.65537 -14.30193 -14.18656 -14.06132 -13.37675 -13.10571 -12.95783 -12.85051 -12.70722 -12.52578 -12.34160 -12.12811 -11.93595 -11.34466 -11.21448 -10.83620 -10.76826 -10.49934 -10.42298 -9.70748 -9.41414 -8.32422 -6.20405 0.57567 1.19652 1.25735 1.42835 1.44605 1.56805 1.83291 2.00708 2.32722 2.62326 2.75196 3.04229 3.21352 3.61874 3.73003 3.83855 3.90196 3.97166 4.21083 4.22273 4.37375 4.47188 4.50753 4.55519 4.63904 4.70205 4.81284 4.82881 5.18528 5.19702 5.39100 5.46897 5.84282 6.03442 6.27463 6.47771 6.58898 6.78132 7.16505 7.36504 8.03807 8.72392 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.004060 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.133655 B = 6894.142134 C = 7201.872354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.228 4.228 3 C 0.197 3.803 4 N -0.447 5.447 5 C -0.336 4.336 6 H 0.063 0.937 7 C 0.005 3.995 8 N -0.897 5.897 9 Si 0.988 3.012 10 H -0.271 1.271 11 H -0.265 1.265 12 H -0.275 1.275 13 C 0.536 3.464 14 O -0.622 6.622 15 C -0.299 4.299 16 C 0.059 3.941 17 N -0.311 5.311 18 N -0.356 5.356 19 C 0.131 3.869 20 C 0.058 3.942 21 O -0.402 6.402 22 C 0.027 3.973 23 C 0.127 3.873 24 H 0.253 0.747 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.276 0.724 28 H 0.211 0.789 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 15.758 2.559 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.229 4.229 3 C 0.075 3.925 4 N -0.164 5.164 5 C -0.464 4.464 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.812 3.188 10 H -0.196 1.196 11 H -0.189 1.189 12 H -0.201 1.201 13 C 0.327 3.673 14 O -0.509 6.509 15 C -0.314 4.314 16 C -0.127 4.127 17 N -0.132 5.132 18 N -0.137 5.137 19 C 0.011 3.989 20 C -0.020 4.020 21 O -0.321 6.321 22 C -0.069 4.069 23 C -0.024 4.024 24 H 0.270 0.730 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.836 16.807 2.804 17.712 hybrid contribution 0.697 -1.798 -0.250 1.944 sum -4.139 15.009 2.554 15.777 Atomic orbital electron populations 1.25652 0.96427 0.99516 0.99060 1.24130 0.95685 1.01321 1.01810 1.19020 0.82820 0.99392 0.91282 1.43216 1.56473 1.08783 1.07944 1.19383 1.29768 0.84640 1.12659 0.91938 1.26313 0.93647 1.04294 0.95453 1.69792 1.31788 1.36987 1.14852 0.84957 0.78113 0.77221 0.78539 1.19596 1.18939 1.20081 1.18046 0.79829 0.85047 0.84382 1.90534 1.51668 1.74415 1.34324 1.20496 1.16099 0.95901 0.98906 1.25363 0.96318 0.90664 1.00354 1.77046 1.21781 1.18802 0.95557 1.48505 1.42674 1.09159 1.13353 1.21750 1.05082 0.78658 0.93418 1.22525 1.00241 0.84636 0.94573 1.87745 1.83112 1.18145 1.43101 1.22980 0.97504 0.88379 0.98065 1.23153 0.95217 0.84548 0.99497 0.73037 0.88675 0.87179 0.91436 0.77299 0.87444 0.84933 0.92869 0.92392 0.93331 0.93302 0.87483 0.77578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.24 19.25 74.32 1.43 -4.81 16 2 C -0.23 -9.23 10.66 31.13 0.33 -8.90 16 3 C 0.20 9.14 4.93 84.57 0.42 9.56 16 4 N -0.45 -24.15 2.45 -649.22 -1.59 -25.74 16 5 C -0.34 -19.56 8.78 84.06 0.74 -18.82 16 6 H 0.06 3.83 7.83 -2.91 -0.02 3.80 16 7 C 0.01 0.28 5.24 84.93 0.45 0.72 16 8 N -0.90 -48.57 11.28 21.67 0.24 -48.32 16 9 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.54 28.50 7.56 86.64 0.66 29.15 16 14 O -0.62 -36.94 16.87 -4.10 -0.07 -37.01 16 15 C -0.30 -12.67 5.94 -20.15 -0.12 -12.79 16 16 C 0.06 2.22 9.23 85.66 0.79 3.01 16 17 N -0.31 -10.48 12.33 -56.26 -0.69 -11.17 16 18 N -0.36 -10.23 3.65 -346.21 -1.26 -11.50 16 19 C 0.13 2.54 6.86 86.38 0.59 3.14 16 20 C 0.06 1.14 6.11 71.98 0.44 1.58 16 21 O -0.40 -7.48 10.70 -148.98 -1.59 -9.08 16 22 C 0.03 0.35 11.01 113.37 1.25 1.59 16 23 C 0.13 4.26 11.26 84.29 0.95 5.21 16 24 H 0.25 5.66 7.80 -4.42 -0.03 5.62 16 25 H 0.10 4.09 4.99 -2.38 -0.01 4.08 16 26 H 0.11 5.54 5.77 -2.39 -0.01 5.52 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.21 7.81 3.23 -2.91 -0.01 7.80 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.13 1.90 8.06 -2.39 -0.02 1.88 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.21 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -73.63 317.90 6.08 -67.55 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.10 Total: 21.43 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 7.92 Total: 8.63 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -3.30 Total: -96.73 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.66 Total: -46.08 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -73.63 6.08 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.678 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds