Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46933 * 2 1 4 4 C 1.34780 * 119.99660 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99940 * 179.97438 * 4 3 2 7 7 C 1.50696 * 109.47301 * 179.97438 * 6 4 3 8 8 O 1.21275 * 119.99893 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00045 * 179.97438 * 7 6 4 10 10 C 1.39270 * 120.00181 * 185.60667 * 9 7 6 11 11 C 1.39676 * 119.57493 * 18.86973 * 10 9 7 12 12 C 1.38647 * 119.49846 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.66715 * 359.74169 * 12 11 10 14 14 C 1.40576 * 119.12889 * 0.50565 * 13 12 11 15 15 C 1.41336 * 119.78389 * 179.76817 * 14 13 12 16 16 H 1.07999 * 120.00309 * 7.00374 * 15 14 13 17 17 C 1.40029 * 119.99969 * 187.00093 * 15 14 13 18 18 N 1.30742 * 120.00396 * 181.89274 * 17 15 14 19 19 Si 1.86805 * 119.99629 * 1.89704 * 17 15 14 20 20 H 1.48504 * 109.46955 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47197 * 299.99772 * 19 17 15 22 22 H 1.48498 * 109.47442 * 59.99743 * 19 17 15 23 23 N 1.31901 * 119.57925 * 198.89825 * 10 9 7 24 24 H 1.09003 * 109.46825 * 60.00417 * 1 2 3 25 25 H 1.08997 * 109.46675 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46917 * 300.00305 * 1 2 3 27 27 H 1.09001 * 109.47310 * 239.99550 * 2 1 3 28 28 H 1.09003 * 109.46825 * 119.99583 * 2 1 3 29 29 H 0.96998 * 120.00411 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46778 * 59.99974 * 6 4 3 31 31 H 1.08995 * 109.47162 * 300.00130 * 6 4 3 32 32 H 0.96998 * 120.00529 * 5.61400 * 9 7 6 33 33 H 1.08005 * 120.24629 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.66408 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.43386 * 180.24780 * 13 12 11 36 36 H 0.96998 * 119.99368 * 354.83359 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3528 3.0483 0.0013 8 8 5.9591 1.9981 0.0022 9 7 6.0266 4.2155 0.0006 10 6 7.4144 4.2183 -0.1160 11 6 8.0662 3.0902 -0.6195 12 6 9.4479 3.0945 -0.7344 13 6 10.1425 4.2272 -0.3485 14 6 9.4292 5.3287 0.1556 15 6 10.1252 6.4910 0.5585 16 1 11.1861 6.5761 0.3748 17 6 9.4393 7.5322 1.1957 18 7 10.0755 8.6228 1.5352 19 14 7.6151 7.3629 1.5610 20 1 7.1292 8.5932 2.2360 21 1 6.8718 7.1686 0.2902 22 1 7.3943 6.1923 2.4475 23 7 8.0965 5.2859 0.2511 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3880 2.1185 0.0004 30 1 3.4820 3.5626 0.8894 31 1 3.4829 3.5616 -0.8905 32 1 5.5451 5.0536 0.0813 33 1 7.4981 2.2212 -0.9171 34 1 9.9711 2.2328 -1.1216 35 1 11.2189 4.2630 -0.4296 36 1 11.0361 8.6814 1.4141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = -43.912616 kcal Electronic energy + Delta-G solvation = -20773.541033 eV Core-core repulsion = 17450.478154 eV Total energy + Delta-G solvation = -3323.062879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50467 -39.31108 -37.91417 -35.41872 -34.45573 -33.49883 -31.81802 -31.09047 -30.19292 -28.83539 -25.33518 -23.65382 -22.39852 -21.74534 -20.78714 -19.75814 -18.34643 -17.46198 -17.29963 -16.22393 -16.08270 -15.80395 -15.24444 -15.01999 -14.49968 -13.99455 -13.89254 -13.58019 -13.42834 -13.03329 -12.79519 -12.66697 -12.20582 -12.19169 -12.16838 -11.82259 -11.69642 -11.12669 -10.77044 -10.36405 -10.03150 -9.91430 -9.61256 -9.25328 -9.18503 -8.98803 -8.52678 -7.80454 -7.36774 -7.23900 -4.76527 2.23516 2.57954 2.66138 2.73844 3.10343 3.44778 3.54655 3.65592 3.97256 4.38012 4.40705 4.64040 4.66063 4.74981 4.85943 4.99034 5.05210 5.12358 5.48110 5.54591 5.58141 5.69883 5.88019 6.10998 6.22869 6.47357 6.54230 6.59912 7.16009 7.20476 7.28783 7.45109 7.59552 7.63961 7.78678 8.12025 8.15169 8.31669 8.51093 8.66989 9.41275 10.00972 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.004100 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.001022 B = 6827.005893 C = 7664.148400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.512 3.488 5 O -0.490 6.490 6 C -0.164 4.164 7 C 0.511 3.489 8 O -0.468 6.468 9 N -0.658 5.658 10 C 0.389 3.611 11 C -0.310 4.310 12 C -0.034 4.034 13 C -0.277 4.277 14 C 0.274 3.726 15 C -0.477 4.477 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.808 5.808 19 Si 1.158 2.842 20 H -0.333 1.333 21 H -0.284 1.284 22 H -0.294 1.294 23 N -0.599 5.599 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.399 0.601 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.406 0.594 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.099 -8.722 -2.861 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.394 5.394 4 C 0.296 3.704 5 O -0.361 6.361 6 C -0.207 4.207 7 C 0.295 3.705 8 O -0.338 6.338 9 N -0.305 5.305 10 C 0.159 3.841 11 C -0.335 4.335 12 C -0.058 4.058 13 C -0.299 4.299 14 C 0.149 3.851 15 C -0.509 4.509 16 H 0.101 0.899 17 C -0.179 4.179 18 N -0.430 5.430 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.213 1.213 22 H -0.222 1.222 23 N -0.325 5.325 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.241 0.759 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.651 -8.681 -1.968 21.573 hybrid contribution 1.457 -0.562 -0.913 1.809 sum -18.194 -9.243 -2.881 20.610 Atomic orbital electron populations 1.22001 0.94503 1.03197 1.02471 1.21263 0.94024 0.83046 1.02510 1.46025 1.06895 1.08854 1.77653 1.19993 0.82282 0.90807 0.77344 1.90885 1.54351 1.45410 1.45458 1.21577 0.94881 0.97246 1.06990 1.19872 0.88873 0.83753 0.77977 1.90785 1.68302 1.30568 1.44190 1.43277 1.05854 1.09410 1.71974 1.18061 0.82253 0.91310 0.92514 1.21556 0.94892 1.00927 1.16082 1.20941 0.93721 0.96344 0.94837 1.21605 0.99158 0.95675 1.13512 1.18269 0.85754 0.92691 0.88337 1.20713 0.97319 1.00051 1.32832 0.89880 1.27784 1.10075 0.90067 0.89933 1.70643 1.12295 1.25724 1.34318 0.81774 0.70861 0.71552 0.76359 1.26710 1.21269 1.22227 1.65898 1.09317 1.26815 1.30504 0.91987 0.90855 0.91967 0.91539 0.91537 0.76749 0.85801 0.85728 0.75851 0.84286 0.87569 0.87667 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.03 37.16 0.37 -0.38 16 2 C 0.12 0.91 6.39 -4.04 -0.03 0.88 16 3 N -0.74 -6.01 5.56 -60.29 -0.33 -6.35 16 4 C 0.51 6.37 7.82 -10.98 -0.09 6.28 16 5 O -0.49 -8.90 14.18 -18.96 -0.27 -9.17 16 6 C -0.16 -1.67 6.19 -29.03 -0.18 -1.85 16 7 C 0.51 8.62 7.66 -10.99 -0.08 8.54 16 8 O -0.47 -10.04 10.98 -18.95 -0.21 -10.25 16 9 N -0.66 -12.05 5.41 -11.40 -0.06 -12.11 16 10 C 0.39 9.07 7.51 -154.98 -1.16 7.91 16 11 C -0.31 -7.24 8.83 -38.89 -0.34 -7.59 16 12 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 13 C -0.28 -6.77 9.83 -38.66 -0.38 -7.15 16 14 C 0.27 7.31 6.39 -85.00 -0.54 6.76 16 15 C -0.48 -13.14 9.58 -37.73 -0.36 -13.50 16 16 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 17 C 0.04 1.15 5.52 -17.34 -0.10 1.06 16 18 N -0.81 -22.08 13.65 55.55 0.76 -21.32 16 19 Si 1.16 27.89 25.53 -169.99 -4.34 23.55 16 20 H -0.33 -7.90 7.11 56.52 0.40 -7.50 16 21 H -0.28 -6.50 6.70 56.52 0.38 -6.12 16 22 H -0.29 -7.21 7.10 56.52 0.40 -6.81 16 23 N -0.60 -15.34 4.58 -10.26 -0.05 -15.39 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 1.83 8.47 -40.82 -0.35 1.48 16 30 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.41 6.21 8.83 -40.82 -0.36 5.85 16 33 H 0.14 3.25 5.33 -52.50 -0.28 2.97 16 34 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 36 H 0.28 7.41 8.72 -40.82 -0.36 7.05 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -35.97 309.22 -7.52 -43.49 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.39 Total: 3.11 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.29 Total: -0.22 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.31 Total: -55.17 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.48 Total: -19.42 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: -4.34 Total: 23.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.97 -7.52 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.419 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds