Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46933 * 2 1 4 4 C 1.34780 * 119.99660 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99940 * 179.97438 * 4 3 2 7 7 C 1.50696 * 109.47301 * 179.97438 * 6 4 3 8 8 O 1.21275 * 119.99893 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00045 * 179.97438 * 7 6 4 10 10 C 1.39270 * 120.00181 * 185.60667 * 9 7 6 11 11 C 1.39676 * 119.57493 * 18.86973 * 10 9 7 12 12 C 1.38647 * 119.49846 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.66715 * 359.74169 * 12 11 10 14 14 C 1.40576 * 119.12889 * 0.50565 * 13 12 11 15 15 C 1.41336 * 119.78389 * 179.76817 * 14 13 12 16 16 H 1.07999 * 120.00309 * 7.00374 * 15 14 13 17 17 C 1.40029 * 119.99969 * 187.00093 * 15 14 13 18 18 N 1.30742 * 120.00396 * 181.89274 * 17 15 14 19 19 Si 1.86805 * 119.99629 * 1.89704 * 17 15 14 20 20 H 1.48504 * 109.46955 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47197 * 299.99772 * 19 17 15 22 22 H 1.48498 * 109.47442 * 59.99743 * 19 17 15 23 23 N 1.31901 * 119.57925 * 198.89825 * 10 9 7 24 24 H 1.09003 * 109.46825 * 60.00417 * 1 2 3 25 25 H 1.08997 * 109.46675 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46917 * 300.00305 * 1 2 3 27 27 H 1.09001 * 109.47310 * 239.99550 * 2 1 3 28 28 H 1.09003 * 109.46825 * 119.99583 * 2 1 3 29 29 H 0.96998 * 120.00411 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46778 * 59.99974 * 6 4 3 31 31 H 1.08995 * 109.47162 * 300.00130 * 6 4 3 32 32 H 0.96998 * 120.00529 * 5.61400 * 9 7 6 33 33 H 1.08005 * 120.24629 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.66408 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.43386 * 180.24780 * 13 12 11 36 36 H 0.96998 * 119.99368 * 354.83359 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3528 3.0483 0.0013 8 8 5.9591 1.9981 0.0022 9 7 6.0266 4.2155 0.0006 10 6 7.4144 4.2183 -0.1160 11 6 8.0662 3.0902 -0.6195 12 6 9.4479 3.0945 -0.7344 13 6 10.1425 4.2272 -0.3485 14 6 9.4292 5.3287 0.1556 15 6 10.1252 6.4910 0.5585 16 1 11.1861 6.5761 0.3748 17 6 9.4393 7.5322 1.1957 18 7 10.0755 8.6228 1.5352 19 14 7.6151 7.3629 1.5610 20 1 7.1292 8.5932 2.2360 21 1 6.8718 7.1686 0.2902 22 1 7.3943 6.1923 2.4475 23 7 8.0965 5.2859 0.2511 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3880 2.1185 0.0004 30 1 3.4820 3.5626 0.8894 31 1 3.4829 3.5616 -0.8905 32 1 5.5451 5.0536 0.0813 33 1 7.4981 2.2212 -0.9171 34 1 9.9711 2.2328 -1.1216 35 1 11.2189 4.2630 -0.4296 36 1 11.0361 8.6814 1.4141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = -69.891981 kcal Electronic energy + Delta-G solvation = -20774.667583 eV Core-core repulsion = 17450.478154 eV Total energy + Delta-G solvation = -3324.189429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84930 -40.63511 -39.47861 -36.38521 -36.02665 -35.34507 -32.99825 -32.81148 -31.42905 -30.07163 -27.26912 -24.71352 -23.68268 -23.43814 -21.91386 -21.21789 -20.26846 -18.93440 -18.44680 -17.31485 -17.20919 -16.94435 -16.81428 -16.34500 -16.06080 -15.49829 -15.23663 -15.01724 -14.66307 -14.47752 -14.36297 -14.20562 -13.72962 -13.24304 -13.07701 -12.90904 -12.64616 -12.61317 -12.30402 -12.22392 -11.74092 -11.60464 -11.13722 -11.03608 -10.51368 -10.34240 -10.04316 -9.75290 -9.27649 -9.19733 -6.82786 0.51451 0.72159 1.55856 1.58905 1.66023 1.69906 1.79874 2.08090 2.43830 2.47817 2.68596 3.39674 3.55309 3.91980 4.07995 4.20385 4.24431 4.36886 4.38334 4.45741 4.56102 4.65669 4.68021 4.80335 4.99541 5.09878 5.30396 5.35349 5.38186 5.43264 5.52503 5.71787 5.81624 5.93497 6.32472 6.41272 6.61782 6.65420 7.13610 7.37713 7.48521 7.94805 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.004100 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.001022 B = 6827.005893 C = 7664.148400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.716 5.716 4 C 0.506 3.494 5 O -0.558 6.558 6 C -0.147 4.147 7 C 0.507 3.493 8 O -0.517 6.517 9 N -0.652 5.652 10 C 0.382 3.618 11 C -0.312 4.312 12 C -0.029 4.029 13 C -0.294 4.294 14 C 0.258 3.742 15 C -0.507 4.507 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.828 5.828 19 Si 1.190 2.810 20 H -0.327 1.327 21 H -0.265 1.265 22 H -0.302 1.302 23 N -0.609 5.609 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.420 0.580 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.423 0.577 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 -8.966 -3.311 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.371 5.371 4 C 0.291 3.709 5 O -0.435 6.435 6 C -0.189 4.189 7 C 0.294 3.706 8 O -0.389 6.389 9 N -0.300 5.300 10 C 0.150 3.850 11 C -0.336 4.336 12 C -0.053 4.053 13 C -0.316 4.316 14 C 0.133 3.867 15 C -0.540 4.540 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.452 5.452 19 Si 1.022 2.978 20 H -0.261 1.261 21 H -0.192 1.192 22 H -0.231 1.231 23 N -0.335 5.335 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.258 0.742 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.261 0.739 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.263 -8.883 -2.434 25.020 hybrid contribution 2.471 -0.693 -0.829 2.697 sum -20.792 -9.576 -3.263 23.122 Atomic orbital electron populations 1.21940 0.91484 1.04079 1.03570 1.21332 0.96363 0.82630 1.01023 1.45861 1.05973 1.09853 1.75459 1.20448 0.83006 0.91070 0.76368 1.90875 1.56259 1.47412 1.48959 1.21650 0.89219 0.96677 1.11335 1.21077 0.91471 0.82247 0.75769 1.90768 1.69954 1.32164 1.46062 1.43375 1.03830 1.11070 1.71757 1.18428 0.84590 0.90554 0.91435 1.21851 0.95381 1.01095 1.15283 1.21316 0.93756 0.96744 0.93507 1.21750 0.99826 0.95839 1.14234 1.18452 0.86727 0.92998 0.88554 1.20714 0.96907 1.01416 1.34953 0.91497 1.28692 1.12499 0.89762 0.89515 1.70670 1.12276 1.26255 1.35957 0.81410 0.68395 0.71195 0.76788 1.26085 1.19207 1.23059 1.65951 1.08958 1.27809 1.30793 0.90777 0.90189 0.90850 0.93084 0.93222 0.74170 0.81307 0.80985 0.73915 0.84013 0.84282 0.86798 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.03 71.98 0.72 -0.21 16 2 C 0.11 1.55 6.39 86.38 0.55 2.10 16 3 N -0.72 -9.37 5.56 -463.04 -2.57 -11.94 16 4 C 0.51 11.28 7.82 87.66 0.69 11.97 16 5 O -0.56 -20.11 14.18 20.41 0.29 -19.82 16 6 C -0.15 -2.33 6.19 29.10 0.18 -2.15 16 7 C 0.51 15.74 7.66 87.66 0.67 16.42 16 8 O -0.52 -21.69 10.98 20.43 0.22 -21.46 16 9 N -0.65 -22.00 5.41 -308.37 -1.67 -23.67 16 10 C 0.38 17.18 7.51 133.25 1.00 18.18 16 11 C -0.31 -14.19 8.83 22.72 0.20 -13.98 16 12 C -0.03 -1.28 10.15 22.39 0.23 -1.06 16 13 C -0.29 -14.34 9.83 22.87 0.22 -14.11 16 14 C 0.26 13.82 6.39 40.19 0.26 14.07 16 15 C -0.51 -28.64 9.58 23.47 0.22 -28.41 16 16 H 0.07 3.85 8.05 -2.91 -0.02 3.82 16 17 C 0.01 0.63 5.52 85.29 0.47 1.10 16 18 N -0.83 -46.12 13.65 21.84 0.30 -45.82 16 19 Si 1.19 55.58 25.53 68.60 1.75 57.33 16 20 H -0.33 -14.83 7.11 99.48 0.71 -14.12 16 21 H -0.27 -11.38 6.70 99.48 0.67 -10.72 16 22 H -0.30 -14.37 7.10 99.48 0.71 -13.66 16 23 N -0.61 -30.52 4.58 -186.36 -0.85 -31.37 16 24 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.42 1.84 8.47 -92.71 -0.79 1.06 16 30 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.42 11.27 8.83 -92.71 -0.82 10.45 16 33 H 0.14 6.49 5.33 -3.15 -0.02 6.47 16 34 H 0.14 5.12 8.06 -2.91 -0.02 5.10 16 35 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 36 H 0.28 15.15 8.72 -92.71 -0.81 14.35 16 Total: -1.00 -82.11 309.22 2.33 -79.78 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.56 Total: 13.06 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.42 Total: 3.92 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.80 Total: -112.80 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: 0.51 Total: -41.29 kcal Atomic # 14 Polarization: 55.58 SS G_CDS: 1.75 Total: 57.33 kcal Total: -82.11 2.33 -79.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.892 kcal (2) G-P(sol) polarization free energy of solvation -82.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds