Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 119.99821 * 2 1 4 4 N 1.34779 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99904 * 5.15596 * 4 2 1 6 6 C 1.46499 * 119.99769 * 185.15565 * 4 2 1 7 7 C 1.50700 * 109.47046 * 269.99834 * 6 4 2 8 8 O 1.21276 * 119.99921 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00064 * 180.02562 * 7 6 4 10 10 C 1.39268 * 119.99747 * 185.59547 * 9 7 6 11 11 C 1.39670 * 119.57871 * 18.90941 * 10 9 7 12 12 C 1.38658 * 119.49917 * 180.02562 * 11 10 9 13 13 C 1.38353 * 118.66318 * 359.74281 * 12 11 10 14 14 C 1.40572 * 119.13442 * 0.49940 * 13 12 11 15 15 C 1.41334 * 119.79086 * 179.76793 * 14 13 12 16 16 H 1.07996 * 120.00044 * 4.84890 * 15 14 13 17 17 C 1.40026 * 120.00367 * 184.84218 * 15 14 13 18 18 N 1.30741 * 120.00383 * 184.83729 * 17 15 14 19 19 Si 1.86807 * 119.99826 * 4.83877 * 17 15 14 20 20 H 1.48493 * 109.47234 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46901 * 299.99931 * 19 17 15 22 22 H 1.48502 * 109.46686 * 59.99940 * 19 17 15 23 23 N 1.31910 * 119.57138 * 198.93379 * 10 9 7 24 24 H 1.09005 * 109.46969 * 185.24337 * 1 2 3 25 25 H 1.09001 * 109.47135 * 305.24171 * 1 2 3 26 26 H 1.08997 * 109.47201 * 65.24603 * 1 2 3 27 27 H 1.09000 * 109.47055 * 275.28379 * 5 4 2 28 28 H 1.09001 * 109.47300 * 35.27923 * 5 4 2 29 29 H 1.08998 * 109.47116 * 155.28759 * 5 4 2 30 30 H 1.08997 * 109.47010 * 150.00406 * 6 4 2 31 31 H 1.08993 * 109.47485 * 30.00283 * 6 4 2 32 32 H 0.96994 * 119.99717 * 5.59278 * 9 7 6 33 33 H 1.08002 * 120.25432 * 359.97438 * 11 10 9 34 34 H 1.07993 * 120.66718 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43179 * 180.25075 * 13 12 11 36 36 H 0.97001 * 119.99803 * 354.99230 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4529 -2.4334 -0.1129 6 6 3.6415 -1.1696 0.1145 7 6 4.2528 -1.1073 -1.2615 8 8 3.5388 -1.0645 -2.2408 9 7 5.5930 -1.0990 -1.4037 10 6 6.1584 -0.9242 -2.6644 11 6 5.3917 -0.3728 -3.6934 12 6 5.9560 -0.2000 -4.9480 13 6 7.2730 -0.5773 -5.1410 14 6 7.9907 -1.1312 -4.0667 15 6 9.3354 -1.5260 -4.2497 16 1 9.8326 -1.3305 -5.1882 17 6 10.0230 -2.1706 -3.2141 18 7 11.2930 -2.4510 -3.3479 19 14 9.1258 -2.6299 -1.6413 20 1 10.0699 -3.2976 -0.7098 21 1 8.5850 -1.4028 -1.0035 22 1 8.0090 -3.5551 -1.9608 23 7 7.4111 -1.2820 -2.8714 24 1 -0.3633 -1.0234 0.0939 25 1 -0.3633 0.5930 0.8393 26 1 -0.3633 0.4303 -0.9332 27 1 1.1109 -2.7455 0.8738 28 1 0.5934 -2.3008 -0.7701 29 1 2.1126 -3.1960 -0.5268 30 1 3.9653 -2.0822 0.6149 31 1 3.9621 -0.3041 0.6942 32 1 6.1637 -1.2148 -0.6280 33 1 4.3666 -0.0840 -3.5134 34 1 5.3806 0.2249 -5.7571 35 1 7.7424 -0.4516 -6.1055 36 1 11.7415 -2.2789 -4.1906 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882477076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -32.380489 kcal Electronic energy + Delta-G solvation = -21230.849277 eV Core-core repulsion = 17908.286468 eV Total energy + Delta-G solvation = -3322.562808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54541 -39.48080 -38.03529 -35.62699 -34.54598 -33.51985 -31.13740 -31.10424 -29.61549 -28.03497 -26.29978 -25.27316 -22.47469 -21.77785 -20.11491 -19.42778 -18.39614 -17.53963 -17.21084 -16.84330 -15.99301 -15.52835 -15.19395 -14.98026 -14.39355 -13.93732 -13.67857 -13.55503 -13.32934 -13.08691 -13.05363 -12.77320 -12.41468 -12.27760 -12.21932 -11.95688 -11.79774 -11.20229 -10.80083 -10.38960 -10.03031 -10.02042 -9.71705 -9.50401 -9.18295 -8.78323 -8.55524 -7.81382 -7.39722 -7.25943 -4.78825 2.17535 2.40739 2.63738 2.69785 3.04049 3.37970 3.52655 3.63438 3.95562 4.37095 4.40410 4.62438 4.76152 4.84715 4.88471 5.01184 5.12014 5.19022 5.30436 5.42854 5.52668 5.61346 5.84100 6.06460 6.08844 6.44940 6.51543 6.56347 7.11169 7.12634 7.18376 7.42746 7.55954 7.59932 7.75666 7.98356 8.10430 8.27062 8.43034 8.64321 9.39215 9.98731 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.004747 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.250094 B = 5897.603452 C = 6520.435854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.540 6.540 4 N -0.602 5.602 5 C 0.082 3.918 6 C 0.098 3.902 7 C 0.498 3.502 8 O -0.505 6.505 9 N -0.655 5.655 10 C 0.388 3.612 11 C -0.310 4.310 12 C -0.035 4.035 13 C -0.277 4.277 14 C 0.273 3.727 15 C -0.477 4.477 16 H 0.083 0.917 17 C 0.043 3.957 18 N -0.806 5.806 19 Si 1.157 2.843 20 H -0.332 1.332 21 H -0.282 1.282 22 H -0.295 1.295 23 N -0.599 5.599 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.408 0.592 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 -1.256 9.433 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.336 5.336 5 C -0.061 4.061 6 C -0.029 4.029 7 C 0.283 3.717 8 O -0.379 6.379 9 N -0.301 5.301 10 C 0.158 3.842 11 C -0.334 4.334 12 C -0.059 4.059 13 C -0.299 4.299 14 C 0.149 3.851 15 C -0.509 4.509 16 H 0.101 0.899 17 C -0.178 4.178 18 N -0.428 5.428 19 Si 0.993 3.007 20 H -0.266 1.266 21 H -0.210 1.210 22 H -0.223 1.223 23 N -0.325 5.325 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.244 0.756 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.932 -1.630 10.789 20.144 hybrid contribution -0.141 0.878 -2.235 2.406 sum -17.073 -0.751 8.554 19.111 Atomic orbital electron populations 1.21934 0.91422 1.04533 1.05287 1.20850 0.90760 0.82894 0.74950 1.90744 1.70621 1.31096 1.49150 1.47485 1.05342 1.07251 1.73522 1.21844 0.97701 0.85084 1.01479 1.21301 0.81262 1.05894 0.94442 1.21144 0.81758 0.76494 0.92316 1.90619 1.60847 1.46759 1.39661 1.43286 1.06953 1.70564 1.09250 1.18091 0.89539 0.92392 0.84217 1.21513 1.02723 1.15415 0.93789 1.20930 0.94271 0.94973 0.95709 1.21601 0.95537 1.13037 0.99743 1.18269 0.92984 0.88410 0.85408 1.20726 0.95138 1.32644 1.02367 0.89859 1.27785 0.94475 0.90258 1.05300 1.70644 1.09677 1.34615 1.27869 0.81813 0.70932 0.76200 0.71756 1.26592 1.21000 1.22314 1.65993 1.10720 1.30990 1.24771 0.90084 0.88784 0.88636 0.92178 0.90668 0.90588 0.87022 0.86548 0.75646 0.84500 0.87629 0.87663 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.90 36.01 0.36 -0.97 16 2 C 0.52 6.49 7.77 -10.98 -0.09 6.41 16 3 O -0.54 -9.30 16.73 5.55 0.09 -9.20 16 4 N -0.60 -6.66 2.36 -182.96 -0.43 -7.09 16 5 C 0.08 0.59 9.66 59.85 0.58 1.17 16 6 C 0.10 1.14 5.83 -5.19 -0.03 1.11 16 7 C 0.50 8.41 7.74 -10.99 -0.09 8.32 16 8 O -0.51 -10.15 13.23 5.56 0.07 -10.08 16 9 N -0.65 -12.27 5.41 -11.40 -0.06 -12.33 16 10 C 0.39 9.12 7.51 -154.97 -1.16 7.96 16 11 C -0.31 -7.26 8.83 -38.89 -0.34 -7.60 16 12 C -0.03 -0.79 10.15 -39.38 -0.40 -1.19 16 13 C -0.28 -6.76 9.83 -38.66 -0.38 -7.14 16 14 C 0.27 7.30 6.40 -85.00 -0.54 6.76 16 15 C -0.48 -13.13 9.57 -37.74 -0.36 -13.49 16 16 H 0.08 2.29 8.05 -52.49 -0.42 1.86 16 17 C 0.04 1.17 5.52 -17.35 -0.10 1.07 16 18 N -0.81 -22.02 13.65 55.55 0.76 -21.26 16 19 Si 1.16 27.87 25.62 -169.99 -4.35 23.52 16 20 H -0.33 -7.87 7.11 56.52 0.40 -7.47 16 21 H -0.28 -6.52 6.60 56.52 0.37 -6.15 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 N -0.60 -15.38 4.54 -10.26 -0.05 -15.42 16 24 H 0.08 0.41 5.81 -51.93 -0.30 0.10 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.47 6.63 -51.93 -0.34 0.13 16 29 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 30 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.12 1.33 7.50 -51.93 -0.39 0.94 16 32 H 0.41 6.53 8.83 -40.82 -0.36 6.17 16 33 H 0.14 3.21 5.34 -52.50 -0.28 2.93 16 34 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.28 7.40 8.72 -40.82 -0.36 7.05 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -35.35 308.57 -6.10 -41.45 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.23 Total: 3.37 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.55 Total: 2.39 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.22 Total: -56.10 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.17 Total: -19.28 kcal Atomic # 14 Polarization: 27.87 SS G_CDS: -4.35 Total: 23.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.35 -6.10 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.073 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds