Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 119.99821 * 2 1 4 4 N 1.34779 * 120.00146 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99904 * 5.15596 * 4 2 1 6 6 C 1.46499 * 119.99769 * 185.15565 * 4 2 1 7 7 C 1.50700 * 109.47046 * 269.99834 * 6 4 2 8 8 O 1.21276 * 119.99921 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00064 * 180.02562 * 7 6 4 10 10 C 1.39268 * 119.99747 * 185.59547 * 9 7 6 11 11 C 1.39670 * 119.57871 * 18.90941 * 10 9 7 12 12 C 1.38658 * 119.49917 * 180.02562 * 11 10 9 13 13 C 1.38353 * 118.66318 * 359.74281 * 12 11 10 14 14 C 1.40572 * 119.13442 * 0.49940 * 13 12 11 15 15 C 1.41334 * 119.79086 * 179.76793 * 14 13 12 16 16 H 1.07996 * 120.00044 * 4.84890 * 15 14 13 17 17 C 1.40026 * 120.00367 * 184.84218 * 15 14 13 18 18 N 1.30741 * 120.00383 * 184.83729 * 17 15 14 19 19 Si 1.86807 * 119.99826 * 4.83877 * 17 15 14 20 20 H 1.48493 * 109.47234 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46901 * 299.99931 * 19 17 15 22 22 H 1.48502 * 109.46686 * 59.99940 * 19 17 15 23 23 N 1.31910 * 119.57138 * 198.93379 * 10 9 7 24 24 H 1.09005 * 109.46969 * 185.24337 * 1 2 3 25 25 H 1.09001 * 109.47135 * 305.24171 * 1 2 3 26 26 H 1.08997 * 109.47201 * 65.24603 * 1 2 3 27 27 H 1.09000 * 109.47055 * 275.28379 * 5 4 2 28 28 H 1.09001 * 109.47300 * 35.27923 * 5 4 2 29 29 H 1.08998 * 109.47116 * 155.28759 * 5 4 2 30 30 H 1.08997 * 109.47010 * 150.00406 * 6 4 2 31 31 H 1.08993 * 109.47485 * 30.00283 * 6 4 2 32 32 H 0.96994 * 119.99717 * 5.59278 * 9 7 6 33 33 H 1.08002 * 120.25432 * 359.97438 * 11 10 9 34 34 H 1.07993 * 120.66718 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43179 * 180.25075 * 13 12 11 36 36 H 0.97001 * 119.99803 * 354.99230 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4529 -2.4334 -0.1129 6 6 3.6415 -1.1696 0.1145 7 6 4.2528 -1.1073 -1.2615 8 8 3.5388 -1.0645 -2.2408 9 7 5.5930 -1.0990 -1.4037 10 6 6.1584 -0.9242 -2.6644 11 6 5.3917 -0.3728 -3.6934 12 6 5.9560 -0.2000 -4.9480 13 6 7.2730 -0.5773 -5.1410 14 6 7.9907 -1.1312 -4.0667 15 6 9.3354 -1.5260 -4.2497 16 1 9.8326 -1.3305 -5.1882 17 6 10.0230 -2.1706 -3.2141 18 7 11.2930 -2.4510 -3.3479 19 14 9.1258 -2.6299 -1.6413 20 1 10.0699 -3.2976 -0.7098 21 1 8.5850 -1.4028 -1.0035 22 1 8.0090 -3.5551 -1.9608 23 7 7.4111 -1.2820 -2.8714 24 1 -0.3633 -1.0234 0.0939 25 1 -0.3633 0.5930 0.8393 26 1 -0.3633 0.4303 -0.9332 27 1 1.1109 -2.7455 0.8738 28 1 0.5934 -2.3008 -0.7701 29 1 2.1126 -3.1960 -0.5268 30 1 3.9653 -2.0822 0.6149 31 1 3.9621 -0.3041 0.6942 32 1 6.1637 -1.2148 -0.6280 33 1 4.3666 -0.0840 -3.5134 34 1 5.3806 0.2249 -5.7571 35 1 7.7424 -0.4516 -6.1055 36 1 11.7415 -2.2789 -4.1906 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -56.985897 kcal Electronic energy + Delta-G solvation = -21231.916247 eV Core-core repulsion = 17908.286468 eV Total energy + Delta-G solvation = -3323.629779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87887 -40.75949 -39.67152 -36.65224 -36.18248 -35.40363 -33.03311 -32.20543 -31.09292 -28.92589 -27.43003 -26.91064 -24.07104 -23.60939 -21.67690 -20.56220 -20.20817 -18.98810 -18.29407 -18.04556 -17.10981 -16.96256 -16.77564 -16.36855 -16.10724 -15.48495 -15.25990 -14.88477 -14.56161 -14.38649 -14.24081 -13.92845 -13.77457 -13.64966 -13.31268 -13.03270 -12.96158 -12.71978 -12.54760 -12.26159 -11.81278 -11.62878 -11.15067 -11.00273 -10.94723 -10.46657 -9.78335 -9.76907 -9.30910 -9.23617 -6.85675 0.45748 0.69120 1.39409 1.51908 1.56039 1.71742 1.81064 2.03735 2.21499 2.45182 2.64666 3.49189 3.56859 3.70251 4.03859 4.15895 4.26519 4.31724 4.38235 4.47691 4.60759 4.64440 4.64757 4.73939 4.78504 4.92683 5.09991 5.27258 5.32396 5.36588 5.39385 5.67184 5.77623 5.90053 6.25313 6.31208 6.37328 6.61350 6.99287 7.10945 7.45326 7.92317 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.004747 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.250094 B = 5897.603452 C = 6520.435854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.598 6.598 4 N -0.603 5.603 5 C 0.074 3.926 6 C 0.103 3.897 7 C 0.496 3.504 8 O -0.539 6.539 9 N -0.653 5.653 10 C 0.380 3.620 11 C -0.312 4.312 12 C -0.028 4.028 13 C -0.293 4.293 14 C 0.258 3.742 15 C -0.507 4.507 16 H 0.068 0.932 17 C 0.014 3.986 18 N -0.827 5.827 19 Si 1.188 2.812 20 H -0.326 1.326 21 H -0.270 1.270 22 H -0.298 1.298 23 N -0.609 5.609 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.120 0.880 32 H 0.421 0.579 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 -1.891 11.139 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.295 3.705 3 O -0.479 6.479 4 N -0.335 5.335 5 C -0.068 4.068 6 C -0.024 4.024 7 C 0.284 3.716 8 O -0.414 6.414 9 N -0.300 5.300 10 C 0.148 3.852 11 C -0.336 4.336 12 C -0.052 4.052 13 C -0.315 4.315 14 C 0.133 3.867 15 C -0.540 4.540 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.450 5.450 19 Si 1.020 2.980 20 H -0.260 1.260 21 H -0.197 1.197 22 H -0.227 1.227 23 N -0.336 5.336 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.138 0.862 32 H 0.259 0.741 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.699 -2.295 12.520 23.453 hybrid contribution 0.508 1.108 -2.808 3.062 sum -19.191 -1.187 9.711 21.541 Atomic orbital electron populations 1.21977 0.87812 1.06898 1.05753 1.21770 0.92660 0.82403 0.73658 1.90713 1.72063 1.33165 1.51937 1.47745 1.05166 1.08320 1.72265 1.22145 0.97615 0.83127 1.03872 1.21465 0.81710 1.08345 0.90886 1.22253 0.80668 0.74541 0.94151 1.90585 1.61297 1.48083 1.41458 1.43417 1.08012 1.70579 1.07988 1.18461 0.88970 0.91523 0.86243 1.21798 1.02869 1.14662 0.94271 1.21310 0.93729 0.93629 0.96530 1.21758 0.96357 1.13593 0.99800 1.18459 0.93018 0.88639 0.86591 1.20739 0.96162 1.34742 1.02345 0.91341 1.28640 0.94670 0.89920 1.07053 1.70669 1.10065 1.36243 1.28006 0.81445 0.70168 0.76338 0.70027 1.25960 1.19683 1.22658 1.66034 1.11727 1.31330 1.24479 0.86928 0.87493 0.88731 0.88673 0.89691 0.90855 0.82375 0.86178 0.74093 0.84203 0.84127 0.86661 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.90 71.24 0.71 -1.36 16 2 C 0.50 11.64 7.77 87.66 0.68 12.32 16 3 O -0.60 -20.21 16.73 -3.05 -0.05 -20.26 16 4 N -0.60 -11.46 2.36 -851.14 -2.01 -13.47 16 5 C 0.07 0.76 9.66 127.77 1.23 1.99 16 6 C 0.10 2.08 5.83 85.63 0.50 2.58 16 7 C 0.50 15.72 7.74 87.66 0.68 16.40 16 8 O -0.54 -20.78 13.23 -3.02 -0.04 -20.82 16 9 N -0.65 -23.22 5.41 -308.36 -1.67 -24.89 16 10 C 0.38 17.35 7.51 133.25 1.00 18.35 16 11 C -0.31 -14.17 8.83 22.72 0.20 -13.97 16 12 C -0.03 -1.22 10.15 22.40 0.23 -0.99 16 13 C -0.29 -14.19 9.83 22.87 0.22 -13.96 16 14 C 0.26 13.83 6.40 40.19 0.26 14.09 16 15 C -0.51 -28.65 9.57 23.47 0.22 -28.42 16 16 H 0.07 3.92 8.05 -2.91 -0.02 3.90 16 17 C 0.01 0.76 5.52 85.29 0.47 1.23 16 18 N -0.83 -46.07 13.65 21.84 0.30 -45.77 16 19 Si 1.19 56.05 25.62 68.60 1.76 57.80 16 20 H -0.33 -14.92 7.11 99.48 0.71 -14.21 16 21 H -0.27 -12.01 6.60 99.48 0.66 -11.35 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 N -0.61 -30.86 4.54 -186.36 -0.85 -31.70 16 24 H 0.11 0.64 5.81 -2.38 -0.01 0.63 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.73 6.63 -2.39 -0.02 0.71 16 29 H 0.07 0.84 8.03 -2.39 -0.02 0.82 16 30 H 0.16 1.72 8.07 -2.39 -0.02 1.70 16 31 H 0.12 2.44 7.50 -2.39 -0.02 2.42 16 32 H 0.42 12.52 8.83 -92.71 -0.82 11.70 16 33 H 0.14 6.36 5.34 -3.13 -0.02 6.35 16 34 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 36 H 0.28 15.18 8.72 -92.71 -0.81 14.37 16 Total: -1.00 -78.38 308.57 4.05 -74.32 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.21 Total: 16.54 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.40 Total: 8.25 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.23 Total: -115.83 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.09 Total: -41.08 kcal Atomic # 14 Polarization: 56.05 SS G_CDS: 1.76 Total: 57.80 kcal Total: -78.38 4.05 -74.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.335 kcal (2) G-P(sol) polarization free energy of solvation -78.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds