Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00124 * 2 1 4 4 N 1.34777 * 119.99624 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99921 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47190 * 325.00531 * 5 4 2 7 7 C 1.53007 * 109.46929 * 85.00202 * 5 4 2 8 8 C 1.50696 * 109.47266 * 205.00268 * 5 4 2 9 9 O 1.21273 * 120.00411 * 359.97438 * 8 5 4 10 10 N 1.34773 * 119.99883 * 180.02562 * 8 5 4 11 11 C 1.39274 * 120.00116 * 174.40572 * 10 8 5 12 12 C 1.39671 * 119.57071 * 341.09800 * 11 10 8 13 13 C 1.38661 * 119.49417 * 179.75236 * 12 11 10 14 14 C 1.38341 * 118.66712 * 0.51759 * 13 12 11 15 15 C 1.40575 * 119.13035 * 359.74932 * 14 13 12 16 16 C 1.41337 * 119.78524 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00129 * 6.34010 * 16 15 14 18 18 C 1.40035 * 119.99597 * 186.34491 * 16 15 14 19 19 N 1.30733 * 120.00309 * 353.64946 * 18 16 15 20 20 Si 1.86806 * 119.99526 * 173.65227 * 18 16 15 21 21 H 1.48497 * 109.47315 * 94.98461 * 20 18 16 22 22 H 1.48503 * 109.46916 * 214.98351 * 20 18 16 23 23 H 1.48503 * 109.47291 * 334.98341 * 20 18 16 24 24 N 1.31900 * 119.57826 * 161.38247 * 11 10 8 25 25 H 1.09000 * 109.47123 * 270.00193 * 1 2 3 26 26 H 1.08998 * 109.46663 * 30.00184 * 1 2 3 27 27 H 1.08997 * 109.47480 * 150.00048 * 1 2 3 28 28 H 0.97003 * 120.00321 * 0.02562 * 4 2 1 29 29 H 1.08997 * 109.47080 * 179.97438 * 7 5 4 30 30 H 1.08997 * 109.46705 * 59.99884 * 7 5 4 31 31 H 1.08998 * 109.46777 * 300.00236 * 7 5 4 32 32 H 0.96996 * 120.00670 * 354.39661 * 10 8 5 33 33 H 1.07999 * 120.25711 * 0.02562 * 12 11 10 34 34 H 1.08000 * 120.66328 * 180.26779 * 13 12 11 35 35 H 1.08000 * 120.43093 * 179.77187 * 14 13 12 36 36 H 0.97004 * 120.00317 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1564 -1.0407 1.4368 8 6 4.1479 -2.4554 -0.5999 9 8 3.3597 -3.2913 -0.9882 10 7 5.4729 -2.6789 -0.7038 11 6 5.9380 -3.9138 -1.1492 12 6 5.0921 -5.0244 -1.1085 13 6 5.5551 -6.2520 -1.5572 14 6 6.8541 -6.3409 -2.0245 15 6 7.6581 -5.1878 -2.0347 16 6 8.9874 -5.2629 -2.5088 17 1 9.3504 -6.1765 -2.9561 18 6 9.8339 -4.1528 -2.3984 19 7 9.3618 -3.0106 -1.9724 20 14 11.6376 -4.3042 -2.8601 21 1 11.8275 -3.8642 -4.2656 22 1 12.4525 -3.4496 -1.9595 23 1 12.0669 -5.7191 -2.7221 24 7 7.1734 -4.0207 -1.5987 25 1 -0.3633 0.0000 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6958 -2.0073 0.0005 29 1 5.2464 -1.0412 1.4364 30 1 3.7932 -1.8821 2.0268 31 1 3.7932 -0.1091 1.8706 32 1 6.1027 -1.9797 -0.4686 33 1 4.0836 -4.9269 -0.7346 34 1 4.9157 -7.1222 -1.5383 35 1 7.2452 -7.2838 -2.3773 36 1 9.9482 -2.2417 -1.8956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882477560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -54.432299 kcal Electronic energy + Delta-G solvation = -20919.938467 eV Core-core repulsion = 17596.419420 eV Total energy + Delta-G solvation = -3323.519047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85319 -40.55372 -39.50198 -36.26536 -36.02491 -35.15112 -32.71998 -32.32562 -30.99213 -29.66414 -27.52852 -25.83645 -23.60071 -23.40860 -21.60365 -21.31795 -19.40598 -19.19009 -18.22210 -17.34333 -17.24280 -16.70736 -16.46081 -16.31883 -16.11698 -15.43949 -15.19024 -14.70852 -14.62262 -14.29821 -13.85364 -13.81632 -13.51560 -13.28352 -12.97334 -12.94143 -12.91504 -12.72441 -12.61211 -12.45592 -11.86206 -11.63110 -11.07567 -11.04208 -10.73160 -10.26966 -10.00321 -9.66596 -9.03615 -8.33051 -6.51983 0.65007 1.07408 1.43054 1.47770 1.52789 1.56946 1.66567 1.74167 2.23901 2.36428 2.85629 3.36369 3.85759 3.87903 3.98653 4.05766 4.31889 4.51420 4.59852 4.60495 4.68906 4.72390 4.86599 4.89900 4.93478 5.08661 5.10574 5.22685 5.27446 5.59657 5.61677 5.91136 6.02293 6.23767 6.41283 6.48160 6.75528 6.87930 7.06276 7.16776 8.07440 8.43297 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.004054 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.531991 B = 6904.532233 C = 7690.789750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.510 3.490 3 O -0.593 6.593 4 N -0.708 5.708 5 C 0.136 3.864 6 H 0.112 0.888 7 C -0.151 4.151 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.637 5.637 11 C 0.345 3.655 12 C -0.323 4.323 13 C -0.048 4.048 14 C -0.306 4.306 15 C 0.245 3.755 16 C -0.466 4.466 17 H 0.091 0.909 18 C 0.027 3.973 19 N -0.753 5.753 20 Si 0.987 3.013 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.256 1.256 24 N -0.533 5.533 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.417 0.583 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.417 0.583 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 4.579 5.949 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.300 3.700 3 O -0.474 6.474 4 N -0.363 5.363 5 C 0.027 3.973 6 H 0.130 0.870 7 C -0.210 4.210 8 C 0.302 3.698 9 O -0.417 6.417 10 N -0.282 5.282 11 C 0.109 3.891 12 C -0.348 4.348 13 C -0.072 4.072 14 C -0.329 4.329 15 C 0.118 3.882 16 C -0.497 4.497 17 H 0.109 0.891 18 C -0.195 4.195 19 N -0.375 5.375 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.180 1.180 24 N -0.253 5.253 25 H 0.134 0.866 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.256 0.744 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.254 0.746 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.274 5.693 5.731 13.069 hybrid contribution 0.490 -0.877 -0.265 1.039 sum -9.784 4.817 5.465 12.198 Atomic orbital electron populations 1.21901 0.87477 1.06210 1.06576 1.21659 0.92440 0.82167 0.73776 1.90706 1.71980 1.32747 1.51951 1.45936 1.05069 1.10378 1.74880 1.20630 0.83206 0.94125 0.99377 0.87041 1.22088 1.02505 1.03744 0.92644 1.21062 0.81442 0.89258 0.77999 1.90577 1.55646 1.46876 1.48629 1.43132 1.07732 1.14147 1.63157 1.18865 0.91557 0.85169 0.93479 1.21828 1.02759 0.92872 1.17343 1.21193 0.94625 0.96938 0.94453 1.21911 0.96566 0.99333 1.15092 1.18680 0.93791 0.86376 0.89313 1.19955 0.94781 0.99889 1.35119 0.89055 1.26940 1.05326 0.93958 0.93261 1.70173 1.37838 1.00910 1.28544 0.85118 0.75580 0.79732 0.78807 1.19010 1.19210 1.17973 1.68056 1.11471 1.27236 1.18511 0.86556 0.88404 0.88012 0.74423 0.90052 0.91096 0.90269 0.74584 0.84355 0.84945 0.86878 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.30 71.24 0.73 -1.23 16 2 C 0.51 11.35 7.90 87.66 0.69 12.04 16 3 O -0.59 -18.24 16.76 -3.02 -0.05 -18.30 16 4 N -0.71 -15.85 4.95 -446.08 -2.21 -18.06 16 5 C 0.14 3.52 2.98 44.25 0.13 3.65 16 6 H 0.11 3.04 7.58 -2.38 -0.02 3.02 16 7 C -0.15 -3.28 9.39 71.98 0.68 -2.60 16 8 C 0.52 17.39 7.06 87.66 0.62 18.01 16 9 O -0.54 -20.67 12.64 -3.01 -0.04 -20.71 16 10 N -0.64 -24.67 5.26 -308.38 -1.62 -26.30 16 11 C 0.34 16.79 7.51 133.25 1.00 17.79 16 12 C -0.32 -15.21 8.83 22.72 0.20 -15.01 16 13 C -0.05 -2.18 10.15 22.40 0.23 -1.95 16 14 C -0.31 -15.24 9.83 22.86 0.22 -15.01 16 15 C 0.24 13.55 6.54 40.19 0.26 13.81 16 16 C -0.47 -24.92 9.13 23.47 0.21 -24.71 16 17 H 0.09 4.57 7.86 -2.91 -0.02 4.54 16 18 C 0.03 1.35 5.49 85.29 0.47 1.82 16 19 N -0.75 -38.99 11.49 21.84 0.25 -38.74 16 20 Si 0.99 37.19 29.56 68.60 2.03 39.21 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 N -0.53 -29.18 7.92 -186.36 -1.48 -30.65 16 25 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.42 8.35 7.79 -92.71 -0.72 7.63 16 29 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.42 14.70 8.42 -92.71 -0.78 13.92 16 33 H 0.14 6.21 5.33 -3.16 -0.02 6.19 16 34 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 36 H 0.28 13.01 8.29 -92.71 -0.77 12.24 16 Total: -1.00 -70.17 314.82 1.96 -68.21 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.37 Total: 38.72 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.45 Total: 6.62 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.06 Total: -113.75 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.09 Total: -39.01 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.21 kcal Total: -70.17 1.96 -68.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.775 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds