Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47242 * 54.51525 * 3 2 1 5 5 C 1.36979 * 119.99848 * 264.77357 * 4 3 2 6 6 H 1.07995 * 119.99808 * 124.77052 * 5 4 3 7 7 C 1.38971 * 120.00171 * 304.76883 * 5 4 3 8 8 N 1.31416 * 120.00013 * 183.98987 * 7 5 4 9 9 Si 1.86806 * 119.99928 * 3.99118 * 7 5 4 10 10 H 1.48507 * 109.46869 * 94.66619 * 9 7 5 11 11 H 1.48501 * 109.47050 * 214.66344 * 9 7 5 12 12 H 1.48503 * 109.47155 * 334.66622 * 9 7 5 13 13 C 1.34779 * 119.99985 * 84.77408 * 4 3 2 14 14 O 1.21633 * 119.99798 * 3.42596 * 13 4 3 15 15 C 1.47348 * 119.99829 * 183.42955 * 13 4 3 16 16 C 1.38114 * 126.42510 * 352.40279 * 15 13 4 17 17 N 1.34281 * 107.40375 * 179.97438 * 16 15 13 18 18 C 1.46508 * 125.74887 * 179.97438 * 17 16 15 19 19 N 1.39933 * 108.50258 * 0.23212 * 17 16 15 20 20 C 1.30443 * 108.90893 * 359.60675 * 19 17 16 21 21 C 1.50699 * 125.98616 * 180.15918 * 20 19 17 22 22 O 1.42904 * 109.47303 * 270.26204 * 21 20 19 23 23 C 1.42897 * 114.00186 * 179.97438 * 22 21 20 24 24 H 4.40640 * 5.51441 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47361 * 294.51321 * 3 2 1 26 26 H 1.09004 * 109.46769 * 174.51198 * 3 2 1 27 27 H 0.97004 * 119.99675 * 180.02562 * 8 7 5 28 28 H 1.07995 * 126.29398 * 0.02562 * 16 15 13 29 29 H 1.08998 * 109.46506 * 90.00652 * 18 17 16 30 30 H 1.08998 * 109.47208 * 210.00300 * 18 17 16 31 31 H 1.08997 * 109.47241 * 330.00802 * 18 17 16 32 32 H 1.08999 * 109.47335 * 30.26406 * 21 20 19 33 33 H 1.09001 * 109.47500 * 150.26458 * 21 20 19 34 34 H 1.09001 * 109.47835 * 300.00744 * 23 22 21 35 35 H 1.09009 * 109.46673 * 60.00626 * 23 22 21 36 36 H 1.08997 * 109.46927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8009 -1.1247 5 6 3.4655 -2.1166 -0.9354 6 1 3.0058 -2.8818 -1.5432 7 6 4.3927 -2.4668 0.0388 8 7 4.7687 -3.7194 0.1680 9 14 5.1045 -1.1570 1.1645 10 1 4.3192 -1.1067 2.4239 11 1 6.5185 -1.4871 1.4758 12 1 5.0417 0.1639 0.4888 13 6 3.2589 -0.2438 -2.3457 14 8 3.0249 0.9397 -2.5007 15 6 3.6780 -1.0684 -3.4926 16 6 4.1156 -2.3775 -3.4450 17 7 4.3957 -2.7534 -4.7033 18 6 4.8918 -4.0696 -5.1132 19 7 4.1396 -1.6743 -5.5565 20 6 3.7072 -0.6682 -4.8477 21 6 3.3130 0.6855 -5.3798 22 8 4.4560 1.5431 -5.3938 23 6 4.1896 2.8585 -5.8844 24 1 -1.0498 0.0000 -0.0003 25 1 3.0096 -0.4256 0.9350 26 1 3.0088 1.0238 -0.0983 27 1 5.4156 -3.9638 0.8483 28 1 4.2136 -2.9870 -2.5588 29 1 4.0479 -4.7238 -5.3322 30 1 5.5101 -3.9634 -6.0045 31 1 5.4863 -4.5007 -4.3078 32 1 2.9262 0.5790 -6.3932 33 1 2.5428 1.1170 -4.7405 34 1 3.8212 2.7968 -6.9084 35 1 3.4375 3.3353 -5.2558 36 1 5.1069 3.4470 -5.8627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890402437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = 79.971830 kcal Electronic energy + Delta-G solvation = -21803.659534 eV Core-core repulsion = 18485.968688 eV Total energy + Delta-G solvation = -3317.690846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72273 -38.44307 -37.32988 -35.16924 -33.02050 -32.85003 -31.68624 -29.85863 -28.50270 -26.77296 -26.06138 -25.19906 -24.21735 -21.35368 -19.90087 -18.95337 -18.37907 -17.26829 -16.10376 -15.96027 -15.50315 -15.22930 -15.10134 -14.89172 -14.70905 -14.30087 -13.93320 -13.16149 -12.96431 -12.84223 -12.56552 -12.39338 -12.03492 -11.95226 -11.83482 -11.50078 -11.19693 -11.02586 -10.72485 -10.31114 -10.18363 -9.84063 -9.41423 -9.35425 -9.09355 -8.81608 -8.65530 -7.92830 -7.70876 -6.59253 -4.44438 2.38396 2.66917 2.93853 3.01262 3.15782 3.21438 3.33725 3.51272 4.03098 4.25149 4.54298 4.68052 4.76779 4.95127 5.13196 5.37527 5.44382 5.45550 5.58369 5.66519 5.68707 5.85117 5.89587 5.97768 6.00673 6.14030 6.33677 6.52847 6.55083 6.56378 7.07797 7.37303 7.52036 7.61265 7.96719 8.03306 8.22921 8.25483 8.84078 9.25065 9.64195 10.46126 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.007941 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.557434 B = 3525.196865 C = 4554.733521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.163 4.163 3 C 0.207 3.793 4 N -0.474 5.474 5 C -0.349 4.349 6 H 0.106 0.894 7 C 0.071 3.929 8 N -0.868 5.868 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.254 1.254 13 C 0.580 3.420 14 O -0.584 6.584 15 C -0.259 4.259 16 C 0.116 3.884 17 N -0.377 5.377 18 C 0.104 3.896 19 N -0.308 5.308 20 C 0.114 3.886 21 C 0.151 3.849 22 O -0.379 6.379 23 C 0.037 3.963 24 H 0.211 0.789 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.279 0.721 28 H 0.231 0.769 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 2.250 -6.042 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.164 4.164 3 C 0.085 3.915 4 N -0.195 5.195 5 C -0.476 4.476 6 H 0.123 0.877 7 C -0.137 4.137 8 N -0.502 5.502 9 Si 0.706 3.294 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.177 1.177 13 C 0.372 3.628 14 O -0.468 6.468 15 C -0.274 4.274 16 C -0.032 4.032 17 N -0.157 5.157 18 C -0.038 4.038 19 N -0.132 5.132 20 C -0.054 4.054 21 C 0.073 3.927 22 O -0.296 6.296 23 C -0.060 4.060 24 H 0.228 0.772 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.247 0.753 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.625 2.074 -7.162 7.483 hybrid contribution -0.259 0.544 1.528 1.643 sum -0.884 2.618 -5.634 6.275 Atomic orbital electron populations 1.24641 0.95624 1.02993 1.01919 1.23898 0.95028 0.98384 0.99085 1.18686 0.83419 0.97611 0.91752 1.43377 1.59088 1.10846 1.06221 1.19044 1.23340 0.81829 1.23413 0.87716 1.25551 0.94485 0.96316 0.97361 1.69616 1.30695 1.16578 1.33341 0.86826 0.78654 0.83062 0.80905 1.19679 1.21107 1.17739 1.17452 0.77393 0.85552 0.82432 1.90606 1.55271 1.15845 1.85053 1.20021 1.18540 0.95468 0.93328 1.25399 0.92488 0.96701 0.88628 1.48430 1.50652 1.11032 1.05601 1.21830 0.99951 0.79518 1.02488 1.76871 1.23091 0.95070 1.18139 1.21796 0.97934 0.94206 0.91423 1.20558 0.88648 0.84688 0.98822 1.87928 1.33227 1.22393 1.86082 1.22664 1.01775 0.84398 0.97204 0.77224 0.89928 0.88955 0.91096 0.75344 0.90978 0.89823 0.89000 0.92962 0.89816 0.94627 0.93802 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.30 19.25 29.55 0.57 -3.73 16 2 C -0.16 -3.46 13.63 -37.12 -0.51 -3.97 16 3 C 0.21 4.63 3.93 -6.82 -0.03 4.61 16 4 N -0.47 -11.43 2.02 -119.17 -0.24 -11.67 16 5 C -0.35 -8.53 6.76 -14.98 -0.10 -8.63 16 6 H 0.11 2.64 6.16 -52.49 -0.32 2.32 16 7 C 0.07 1.74 5.49 -17.46 -0.10 1.65 16 8 N -0.87 -21.71 13.96 55.50 0.77 -20.94 16 9 Si 0.88 19.47 24.86 -169.99 -4.23 15.24 16 10 H -0.27 -5.79 7.10 56.52 0.40 -5.39 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.25 -5.69 6.33 56.52 0.36 -5.34 16 13 C 0.58 14.32 7.57 -12.55 -0.10 14.23 16 14 O -0.58 -15.03 14.67 5.25 0.08 -14.95 16 15 C -0.26 -5.97 6.03 -105.06 -0.63 -6.61 16 16 C 0.12 2.43 9.76 -16.53 -0.16 2.27 16 17 N -0.38 -7.04 3.98 -67.57 -0.27 -7.31 16 18 C 0.10 1.34 11.44 59.85 0.68 2.03 16 19 N -0.31 -6.30 12.50 33.90 0.42 -5.87 16 20 C 0.11 2.46 6.89 -82.01 -0.57 1.89 16 21 C 0.15 2.87 5.90 36.01 0.21 3.08 16 22 O -0.38 -7.33 10.69 -35.23 -0.38 -7.70 16 23 C 0.04 0.51 11.01 101.05 1.11 1.63 16 24 H 0.21 2.89 7.80 -54.10 -0.42 2.47 16 25 H 0.08 1.80 4.15 -51.93 -0.22 1.58 16 26 H 0.09 2.03 7.47 -51.93 -0.39 1.64 16 27 H 0.28 6.60 8.31 -40.82 -0.34 6.27 16 28 H 0.23 4.99 4.75 -52.49 -0.25 4.74 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -30.82 313.24 -2.81 -33.63 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.09 Total: 6.41 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 0.39 Total: 8.45 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.69 Total: -45.79 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.30 Total: -22.65 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.23 Total: 15.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.82 -2.81 -33.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.598 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds