Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47242 * 54.51525 * 3 2 1 5 5 C 1.36979 * 119.99848 * 264.77357 * 4 3 2 6 6 H 1.07995 * 119.99808 * 124.77052 * 5 4 3 7 7 C 1.38971 * 120.00171 * 304.76883 * 5 4 3 8 8 N 1.31416 * 120.00013 * 183.98987 * 7 5 4 9 9 Si 1.86806 * 119.99928 * 3.99118 * 7 5 4 10 10 H 1.48507 * 109.46869 * 94.66619 * 9 7 5 11 11 H 1.48501 * 109.47050 * 214.66344 * 9 7 5 12 12 H 1.48503 * 109.47155 * 334.66622 * 9 7 5 13 13 C 1.34779 * 119.99985 * 84.77408 * 4 3 2 14 14 O 1.21633 * 119.99798 * 3.42596 * 13 4 3 15 15 C 1.47348 * 119.99829 * 183.42955 * 13 4 3 16 16 C 1.38114 * 126.42510 * 352.40279 * 15 13 4 17 17 N 1.34281 * 107.40375 * 179.97438 * 16 15 13 18 18 C 1.46508 * 125.74887 * 179.97438 * 17 16 15 19 19 N 1.39933 * 108.50258 * 0.23212 * 17 16 15 20 20 C 1.30443 * 108.90893 * 359.60675 * 19 17 16 21 21 C 1.50699 * 125.98616 * 180.15918 * 20 19 17 22 22 O 1.42904 * 109.47303 * 270.26204 * 21 20 19 23 23 C 1.42897 * 114.00186 * 179.97438 * 22 21 20 24 24 H 4.40640 * 5.51441 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47361 * 294.51321 * 3 2 1 26 26 H 1.09004 * 109.46769 * 174.51198 * 3 2 1 27 27 H 0.97004 * 119.99675 * 180.02562 * 8 7 5 28 28 H 1.07995 * 126.29398 * 0.02562 * 16 15 13 29 29 H 1.08998 * 109.46506 * 90.00652 * 18 17 16 30 30 H 1.08998 * 109.47208 * 210.00300 * 18 17 16 31 31 H 1.08997 * 109.47241 * 330.00802 * 18 17 16 32 32 H 1.08999 * 109.47335 * 30.26406 * 21 20 19 33 33 H 1.09001 * 109.47500 * 150.26458 * 21 20 19 34 34 H 1.09001 * 109.47835 * 300.00744 * 23 22 21 35 35 H 1.09009 * 109.46673 * 60.00626 * 23 22 21 36 36 H 1.08997 * 109.46927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8009 -1.1247 5 6 3.4655 -2.1166 -0.9354 6 1 3.0058 -2.8818 -1.5432 7 6 4.3927 -2.4668 0.0388 8 7 4.7687 -3.7194 0.1680 9 14 5.1045 -1.1570 1.1645 10 1 4.3192 -1.1067 2.4239 11 1 6.5185 -1.4871 1.4758 12 1 5.0417 0.1639 0.4888 13 6 3.2589 -0.2438 -2.3457 14 8 3.0249 0.9397 -2.5007 15 6 3.6780 -1.0684 -3.4926 16 6 4.1156 -2.3775 -3.4450 17 7 4.3957 -2.7534 -4.7033 18 6 4.8918 -4.0696 -5.1132 19 7 4.1396 -1.6743 -5.5565 20 6 3.7072 -0.6682 -4.8477 21 6 3.3130 0.6855 -5.3798 22 8 4.4560 1.5431 -5.3938 23 6 4.1896 2.8585 -5.8844 24 1 -1.0498 0.0000 -0.0003 25 1 3.0096 -0.4256 0.9350 26 1 3.0088 1.0238 -0.0983 27 1 5.4156 -3.9638 0.8483 28 1 4.2136 -2.9870 -2.5588 29 1 4.0479 -4.7238 -5.3322 30 1 5.5101 -3.9634 -6.0045 31 1 5.4863 -4.5007 -4.3078 32 1 2.9262 0.5790 -6.3932 33 1 2.5428 1.1170 -4.7405 34 1 3.8212 2.7968 -6.9084 35 1 3.4375 3.3353 -5.2558 36 1 5.1069 3.4470 -5.8627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890402437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = 58.883749 kcal Electronic energy + Delta-G solvation = -21804.573982 eV Core-core repulsion = 18485.968688 eV Total energy + Delta-G solvation = -3318.605294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32596 -40.24897 -38.70518 -37.01160 -34.61522 -34.40541 -33.46061 -31.47529 -29.82489 -28.41722 -27.44276 -26.88301 -25.68118 -22.99490 -21.55253 -20.73292 -19.97625 -18.88293 -17.72724 -17.46767 -17.15791 -16.84934 -16.57341 -16.34021 -16.14616 -15.89839 -15.65976 -14.88092 -14.59119 -14.42857 -14.16716 -13.77447 -13.57578 -13.38321 -13.17636 -13.00886 -12.98034 -12.47693 -12.28898 -11.99169 -11.85180 -11.49568 -11.02995 -10.99798 -10.73499 -10.41402 -10.32624 -9.72655 -9.43764 -8.48676 -6.35827 0.76020 1.00397 1.23402 1.36022 1.43065 1.53383 1.75958 1.94781 2.20441 2.55129 2.83727 2.94356 3.16089 3.55836 3.62272 3.96162 4.19736 4.23723 4.36231 4.40256 4.45442 4.47322 4.55755 4.61500 4.65968 4.70782 4.84454 4.90743 4.97677 5.08770 5.47236 5.54592 6.03161 6.08661 6.17093 6.22946 6.62702 6.72472 6.94089 7.37360 7.77748 8.58401 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.007941 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.557434 B = 3525.196865 C = 4554.733521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.230 4.230 3 C 0.206 3.794 4 N -0.479 5.479 5 C -0.345 4.345 6 H 0.092 0.908 7 C 0.045 3.955 8 N -0.888 5.888 9 Si 0.915 3.085 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.570 3.430 14 O -0.605 6.605 15 C -0.293 4.293 16 C 0.120 3.880 17 N -0.367 5.367 18 C 0.091 3.909 19 N -0.309 5.309 20 C 0.101 3.899 21 C 0.155 3.845 22 O -0.410 6.410 23 C 0.030 3.970 24 H 0.257 0.743 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.283 0.717 28 H 0.223 0.777 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 2.088 -6.647 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.231 4.231 3 C 0.085 3.915 4 N -0.200 5.200 5 C -0.473 4.473 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.524 5.524 9 Si 0.741 3.259 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.362 3.638 14 O -0.490 6.490 15 C -0.307 4.307 16 C -0.031 4.031 17 N -0.147 5.147 18 C -0.048 4.048 19 N -0.132 5.132 20 C -0.066 4.066 21 C 0.077 3.923 22 O -0.328 6.328 23 C -0.066 4.066 24 H 0.273 0.727 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.239 0.761 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.167 1.888 -7.772 8.083 hybrid contribution -0.146 0.554 1.649 1.746 sum -1.313 2.442 -6.123 6.721 Atomic orbital electron populations 1.25681 0.96480 0.99672 0.98597 1.23967 0.95543 1.01458 1.02150 1.18594 0.84889 0.96950 0.91097 1.43469 1.59142 1.10779 1.06608 1.18919 1.23342 0.81788 1.23229 0.89045 1.25909 0.94658 0.97422 0.98147 1.69652 1.31313 1.17378 1.34022 0.86253 0.78390 0.80993 0.80256 1.18193 1.20870 1.18832 1.17801 0.77259 0.85632 0.83075 1.90565 1.56348 1.16623 1.85462 1.20153 1.20421 0.96420 0.93707 1.25091 0.92495 0.96055 0.89435 1.48844 1.49098 1.12162 1.04593 1.22315 1.01393 0.77226 1.03891 1.76822 1.22887 0.95280 1.18256 1.22167 0.98072 0.95454 0.90944 1.20530 0.88248 0.83695 0.99797 1.87870 1.33721 1.24411 1.86829 1.22923 1.02895 0.82323 0.98461 0.72670 0.89838 0.89581 0.90682 0.76145 0.88682 0.87798 0.87554 0.90220 0.91259 0.91979 0.93930 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.43 19.25 74.32 1.43 -5.00 16 2 C -0.23 -9.68 13.63 31.13 0.42 -9.26 16 3 C 0.21 9.36 3.93 84.57 0.33 9.69 16 4 N -0.48 -23.53 2.02 -649.19 -1.31 -24.84 16 5 C -0.35 -17.14 6.76 84.07 0.57 -16.58 16 6 H 0.09 4.73 6.16 -2.91 -0.02 4.71 16 7 C 0.05 2.22 5.49 84.93 0.47 2.68 16 8 N -0.89 -44.40 13.96 21.67 0.30 -44.10 16 9 Si 0.92 39.94 24.86 68.60 1.71 41.64 16 10 H -0.26 -10.55 7.10 99.48 0.71 -9.84 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.26 -11.90 6.33 99.48 0.63 -11.27 16 13 C 0.57 28.84 7.57 86.64 0.66 29.49 16 14 O -0.60 -31.95 14.67 -4.13 -0.06 -32.01 16 15 C -0.29 -13.69 6.03 -20.15 -0.12 -13.81 16 16 C 0.12 5.05 9.76 84.29 0.82 5.88 16 17 N -0.37 -13.33 3.98 -367.69 -1.46 -14.80 16 18 C 0.09 2.15 11.44 127.77 1.46 3.61 16 19 N -0.31 -12.30 12.50 -46.66 -0.58 -12.89 16 20 C 0.10 4.34 6.89 43.52 0.30 4.64 16 21 C 0.16 5.87 5.90 71.24 0.42 6.29 16 22 O -0.41 -15.70 10.69 -148.98 -1.59 -17.29 16 23 C 0.03 0.80 11.01 113.37 1.25 2.05 16 24 H 0.26 5.89 7.80 -4.43 -0.03 5.85 16 25 H 0.08 3.66 4.15 -2.39 -0.01 3.65 16 26 H 0.09 3.90 7.47 -2.38 -0.02 3.88 16 27 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.22 9.79 4.75 -2.91 -0.01 9.77 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 2.78 6.74 -2.39 -0.02 2.76 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.71 313.24 6.03 -60.68 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.03 Total: 23.91 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 8.01 Total: 19.69 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.06 Total: -96.62 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -1.65 Total: -49.30 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.71 Total: 41.64 kcal Total: -66.71 6.03 -60.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.562 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds