Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99760 * 2 1 4 4 N 1.46499 * 109.46927 * 124.99685 * 3 2 1 5 5 C 1.46499 * 120.00194 * 269.99548 * 4 3 2 6 6 C 1.50701 * 109.47328 * 270.00785 * 5 4 3 7 7 H 1.07992 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46992 * 90.00142 * 10 8 6 12 12 H 1.48496 * 109.47101 * 209.99811 * 10 8 6 13 13 H 1.48497 * 109.47178 * 330.00121 * 10 8 6 14 14 C 1.38968 * 120.00060 * 90.00138 * 4 3 2 15 15 C 1.39737 * 120.03136 * 185.01977 * 14 4 3 16 16 N 1.31905 * 120.09261 * 179.97438 * 15 14 4 17 17 C 1.32224 * 120.16882 * 359.97438 * 16 15 14 18 18 C 1.39239 * 120.06396 * 0.02562 * 17 16 15 19 19 C 1.48026 * 120.04669 * 180.02562 * 18 17 16 20 20 O 1.21442 * 119.99993 * 359.97438 * 19 18 17 21 21 O 1.34685 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.45203 * 117.00092 * 179.97438 * 21 19 18 23 23 N 1.32301 * 120.03130 * 4.99788 * 14 4 3 24 24 H 1.08004 * 119.99687 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00133 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00133 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46968 * 4.99747 * 3 2 1 28 28 H 1.08994 * 109.46994 * 244.99634 * 3 2 1 29 29 H 1.09005 * 109.47130 * 30.00352 * 5 4 3 30 30 H 1.09003 * 109.47546 * 150.00056 * 5 4 3 31 31 H 0.97005 * 120.00239 * 179.97438 * 9 8 6 32 32 H 1.07998 * 119.95601 * 359.97438 * 15 14 4 33 33 H 1.08000 * 119.96127 * 179.97438 * 17 16 15 34 34 H 1.08995 * 109.47083 * 180.02562 * 22 21 19 35 35 H 1.09001 * 109.46984 * 299.99752 * 22 21 19 36 36 H 1.08998 * 109.47144 * 59.99149 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8370 1.6367 8 6 2.5181 4.0669 3.6081 9 7 1.9578 3.4663 4.6352 10 14 2.8724 5.8997 3.6772 11 1 1.7001 6.6503 3.1597 12 1 3.1355 6.3004 5.0826 13 1 4.0629 6.2055 2.8440 14 6 4.2887 0.8518 0.9779 15 6 5.1432 0.7795 2.0812 16 7 6.3725 0.3235 1.9369 17 6 6.8010 -0.0674 0.7486 18 6 5.9553 0.0017 -0.3553 19 6 6.4352 -0.4365 -1.6853 20 8 7.5675 -0.8562 -1.8142 21 8 5.6166 -0.3688 -2.7526 22 6 6.1545 -0.8149 -4.0254 23 7 4.7136 0.4623 -0.2130 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0988 1.3605 3.2261 31 1 1.7289 3.9749 5.4288 32 1 4.7967 1.0974 3.0534 33 1 7.8083 -0.4398 0.6342 34 1 5.3942 -0.7072 -4.7989 35 1 7.0238 -0.2105 -4.2843 36 1 6.4495 -1.8614 -3.9484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893949343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -0.611711 kcal Electronic energy + Delta-G solvation = -21093.647757 eV Core-core repulsion = 17772.462546 eV Total energy + Delta-G solvation = -3321.185211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95896 -39.88938 -37.02807 -36.40443 -33.87397 -33.58329 -32.59471 -30.24159 -28.08130 -27.70647 -25.71807 -24.81597 -23.39029 -22.13103 -20.64964 -19.53975 -18.18629 -17.36677 -16.71317 -16.59348 -16.41788 -16.31336 -15.59462 -14.99994 -14.69809 -14.48407 -13.82612 -13.72607 -13.18772 -13.02567 -12.68284 -12.41315 -12.14594 -11.72219 -11.49243 -11.29412 -11.02450 -10.99512 -10.89540 -10.85863 -10.83426 -10.73081 -10.29285 -10.06401 -9.38007 -9.19911 -8.76254 -8.61203 -7.12054 -6.23852 -4.34440 0.65493 1.68351 2.48432 2.56252 2.58648 3.19453 3.27272 3.30593 3.55982 4.16814 4.27826 4.42701 4.73425 4.84533 5.01061 5.07321 5.08647 5.19116 5.30020 5.43593 5.47010 5.52837 5.82409 5.84939 6.12098 6.22003 6.28510 6.52270 6.77379 6.87204 6.92579 7.05935 7.26926 7.63878 7.72289 7.82227 7.93329 8.03984 8.27937 8.73785 9.33952 10.80435 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.005202 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.465846 B = 5380.914239 C = 6181.510588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.149 3.851 4 N -0.566 5.566 5 C 0.248 3.752 6 C -0.543 4.543 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.899 3.101 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.369 3.631 15 C 0.045 3.955 16 N -0.411 5.411 17 C 0.020 3.980 18 C 0.083 3.917 19 C 0.533 3.467 20 O -0.502 6.502 21 O -0.334 6.334 22 C 0.034 3.966 23 N -0.477 5.477 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -7.252 -11.156 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.026 3.974 4 N -0.274 5.274 5 C 0.129 3.871 6 C -0.581 4.581 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.726 3.274 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.126 3.874 15 C -0.128 4.128 16 N -0.123 5.123 17 C -0.139 4.139 18 C -0.057 4.057 19 C 0.375 3.625 20 O -0.389 6.389 21 O -0.249 6.249 22 C -0.060 4.060 23 N -0.204 5.204 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.201 0.799 33 H 0.187 0.813 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.588 -7.283 -11.051 13.486 hybrid contribution 0.149 0.962 -0.069 0.976 sum 2.737 -6.320 -11.120 13.081 Atomic orbital electron populations 1.23775 0.95794 1.01583 1.01722 1.23378 0.96041 0.99227 0.98814 1.20503 0.92041 0.94699 0.90190 1.47250 1.05977 1.60250 1.13873 1.19542 0.96572 0.93752 0.77222 1.21488 1.41892 0.93118 1.01634 0.91990 1.24927 0.94545 0.98944 0.95196 1.69912 1.41028 1.36525 1.05247 0.86477 0.78835 0.84610 0.77482 1.20467 1.20929 1.19779 1.19457 0.88284 0.90534 0.89150 1.23867 0.89474 0.99022 1.00454 1.68467 1.14040 1.06431 1.23328 1.23132 1.01067 1.02119 0.87599 1.20559 0.91839 1.01478 0.91822 1.20823 0.82852 0.74431 0.84347 1.90827 1.19461 1.43097 1.85548 1.86720 1.43879 1.76886 1.17373 1.23312 1.00496 1.00142 0.82087 1.67910 1.14245 1.14670 1.23591 0.88928 0.88406 0.88032 0.89775 0.89479 0.93732 0.94277 0.92335 0.79921 0.81315 0.87990 0.91871 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 14.32 29.01 0.42 -2.19 16 2 C -0.16 -2.39 9.85 -36.03 -0.35 -2.74 16 3 C 0.15 2.57 5.91 -5.19 -0.03 2.54 16 4 N -0.57 -11.17 2.55 -176.43 -0.45 -11.62 16 5 C 0.25 5.60 5.01 -5.19 -0.03 5.57 16 6 C -0.54 -13.64 9.39 -34.44 -0.32 -13.96 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -23.81 13.29 55.43 0.74 -23.07 16 10 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.37 7.18 7.37 -154.91 -1.14 6.03 16 15 C 0.04 0.86 10.43 -16.96 -0.18 0.69 16 16 N -0.41 -7.52 10.48 -12.52 -0.13 -7.65 16 17 C 0.02 0.34 10.76 -17.01 -0.18 0.16 16 18 C 0.08 1.42 6.75 -82.89 -0.56 0.87 16 19 C 0.53 8.44 7.95 34.74 0.28 8.71 16 20 O -0.50 -8.19 16.12 -19.22 -0.31 -8.50 16 21 O -0.33 -4.80 10.40 -40.45 -0.42 -5.22 16 22 C 0.03 0.33 10.56 101.05 1.07 1.39 16 23 N -0.48 -8.83 9.03 -8.83 -0.08 -8.91 16 24 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 25 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 26 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.08 1.46 7.72 -51.93 -0.40 1.05 16 28 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 29 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.04 0.91 5.99 -51.93 -0.31 0.60 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.18 3.57 6.03 -52.49 -0.32 3.25 16 33 H 0.17 2.46 7.63 -52.49 -0.40 2.05 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -27.81 323.76 -6.23 -34.04 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.30 Total: 2.13 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.13 Total: 8.70 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.07 Total: -51.25 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.73 Total: -13.72 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.81 -6.23 -34.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.424 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds