Wall clock time and date at job start Mon Mar 30 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99760 * 2 1 4 4 N 1.46499 * 109.46927 * 124.99685 * 3 2 1 5 5 C 1.46499 * 120.00194 * 269.99548 * 4 3 2 6 6 C 1.50701 * 109.47328 * 270.00785 * 5 4 3 7 7 H 1.07992 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46992 * 90.00142 * 10 8 6 12 12 H 1.48496 * 109.47101 * 209.99811 * 10 8 6 13 13 H 1.48497 * 109.47178 * 330.00121 * 10 8 6 14 14 C 1.38968 * 120.00060 * 90.00138 * 4 3 2 15 15 C 1.39737 * 120.03136 * 185.01977 * 14 4 3 16 16 N 1.31905 * 120.09261 * 179.97438 * 15 14 4 17 17 C 1.32224 * 120.16882 * 359.97438 * 16 15 14 18 18 C 1.39239 * 120.06396 * 0.02562 * 17 16 15 19 19 C 1.48026 * 120.04669 * 180.02562 * 18 17 16 20 20 O 1.21442 * 119.99993 * 359.97438 * 19 18 17 21 21 O 1.34685 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.45203 * 117.00092 * 179.97438 * 21 19 18 23 23 N 1.32301 * 120.03130 * 4.99788 * 14 4 3 24 24 H 1.08004 * 119.99687 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00133 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00133 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46968 * 4.99747 * 3 2 1 28 28 H 1.08994 * 109.46994 * 244.99634 * 3 2 1 29 29 H 1.09005 * 109.47130 * 30.00352 * 5 4 3 30 30 H 1.09003 * 109.47546 * 150.00056 * 5 4 3 31 31 H 0.97005 * 120.00239 * 179.97438 * 9 8 6 32 32 H 1.07998 * 119.95601 * 359.97438 * 15 14 4 33 33 H 1.08000 * 119.96127 * 179.97438 * 17 16 15 34 34 H 1.08995 * 109.47083 * 180.02562 * 22 21 19 35 35 H 1.09001 * 109.46984 * 299.99752 * 22 21 19 36 36 H 1.08998 * 109.47144 * 59.99149 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8370 1.6367 8 6 2.5181 4.0669 3.6081 9 7 1.9578 3.4663 4.6352 10 14 2.8724 5.8997 3.6772 11 1 1.7001 6.6503 3.1597 12 1 3.1355 6.3004 5.0826 13 1 4.0629 6.2055 2.8440 14 6 4.2887 0.8518 0.9779 15 6 5.1432 0.7795 2.0812 16 7 6.3725 0.3235 1.9369 17 6 6.8010 -0.0674 0.7486 18 6 5.9553 0.0017 -0.3553 19 6 6.4352 -0.4365 -1.6853 20 8 7.5675 -0.8562 -1.8142 21 8 5.6166 -0.3688 -2.7526 22 6 6.1545 -0.8149 -4.0254 23 7 4.7136 0.4623 -0.2130 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0988 1.3605 3.2261 31 1 1.7289 3.9749 5.4288 32 1 4.7967 1.0974 3.0534 33 1 7.8083 -0.4398 0.6342 34 1 5.3942 -0.7072 -4.7989 35 1 7.0238 -0.2105 -4.2843 36 1 6.4495 -1.8614 -3.9484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893949343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:49 Heat of formation + Delta-G solvation = -15.645625 kcal Electronic energy + Delta-G solvation = -21094.299677 eV Core-core repulsion = 17772.462546 eV Total energy + Delta-G solvation = -3321.837130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33405 -41.14032 -38.48428 -37.58337 -35.41849 -35.03814 -34.24961 -31.71271 -29.54380 -28.86430 -27.20866 -26.13053 -25.11448 -23.50501 -22.02523 -20.78566 -19.51177 -18.76739 -18.56628 -17.90104 -17.69316 -17.55591 -17.11774 -16.50678 -16.12269 -16.02070 -15.12622 -14.89963 -14.59053 -14.23714 -14.20820 -13.94585 -13.26820 -13.16078 -13.04649 -12.85099 -12.60995 -12.57839 -12.42517 -12.18393 -12.14873 -12.07616 -11.83041 -11.73389 -11.00416 -10.63434 -10.44603 -10.10264 -8.70049 -8.15440 -6.36816 -0.73514 0.23147 1.25555 1.28245 1.40669 1.43848 1.45589 1.52554 2.10211 2.40542 2.74382 3.07799 3.13207 3.31717 3.41462 3.93893 4.05098 4.12578 4.22732 4.28996 4.35802 4.39514 4.53958 4.71413 4.86512 4.94246 5.06029 5.09869 5.15072 5.21790 5.56366 5.70571 5.75197 5.90646 6.01874 6.31834 6.39380 6.55278 6.70693 6.87760 7.35037 8.83134 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.005202 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.465846 B = 5380.914239 C = 6181.510588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.152 3.848 4 N -0.574 5.574 5 C 0.265 3.735 6 C -0.549 4.549 7 H 0.051 0.949 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.955 3.045 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.358 3.642 15 C 0.030 3.970 16 N -0.415 5.415 17 C 0.027 3.973 18 C 0.079 3.921 19 C 0.538 3.462 20 O -0.507 6.507 21 O -0.345 6.345 22 C 0.026 3.974 23 N -0.476 5.476 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.173 0.827 33 H 0.195 0.805 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -7.496 -12.605 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.030 3.970 4 N -0.282 5.282 5 C 0.145 3.855 6 C -0.587 4.587 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.781 3.219 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.200 1.200 14 C 0.116 3.884 15 C -0.142 4.142 16 N -0.128 5.128 17 C -0.133 4.133 18 C -0.061 4.061 19 C 0.381 3.619 20 O -0.396 6.396 21 O -0.259 6.259 22 C -0.067 4.067 23 N -0.203 5.203 24 H 0.133 0.867 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.190 0.810 33 H 0.212 0.788 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.799 -7.531 -12.524 14.879 hybrid contribution 0.123 0.956 0.244 0.994 sum 2.923 -6.575 -12.279 14.232 Atomic orbital electron populations 1.24005 0.95172 1.02894 0.98702 1.23196 0.96585 0.98067 1.01546 1.20537 0.91655 0.95683 0.89171 1.47086 1.06674 1.60861 1.13533 1.19106 0.95382 0.92527 0.78516 1.21676 1.41387 0.94459 1.01202 0.93085 1.25589 0.94464 1.02507 0.94962 1.69993 1.42005 1.37867 1.05722 0.85599 0.78563 0.80378 0.77394 1.19792 1.20565 1.20050 1.19463 0.88212 0.91159 0.89566 1.23709 0.90084 1.00222 1.00159 1.68463 1.13599 1.06447 1.24248 1.23539 1.01915 1.00902 0.86909 1.20918 0.91351 1.00772 0.93088 1.20483 0.82775 0.74342 0.84303 1.90824 1.19622 1.43464 1.85657 1.86693 1.44062 1.76731 1.18448 1.23702 1.01866 1.00642 0.80489 1.67919 1.14923 1.14349 1.23078 0.86653 0.87958 0.88348 0.90332 0.89587 0.95181 0.95288 0.92196 0.80993 0.78839 0.85027 0.91265 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 14.32 67.78 0.97 -3.39 16 2 C -0.17 -5.27 9.85 25.64 0.25 -5.01 16 3 C 0.15 5.26 5.91 85.63 0.51 5.77 16 4 N -0.57 -23.02 2.55 -712.09 -1.82 -24.84 16 5 C 0.27 12.28 5.01 85.63 0.43 12.71 16 6 C -0.55 -28.00 9.39 25.60 0.24 -27.76 16 7 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 8 C 0.03 1.33 5.46 84.65 0.46 1.79 16 9 N -0.92 -49.56 13.29 21.45 0.28 -49.28 16 10 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.36 14.07 7.37 133.25 0.98 15.05 16 15 C 0.03 1.18 10.43 85.04 0.89 2.06 16 16 N -0.42 -15.07 10.48 -193.54 -2.03 -17.10 16 17 C 0.03 0.88 10.76 84.87 0.91 1.79 16 18 C 0.08 2.64 6.75 41.78 0.28 2.92 16 19 C 0.54 16.13 7.95 70.42 0.56 16.69 16 20 O -0.51 -15.51 16.12 20.02 0.32 -15.19 16 21 O -0.34 -9.24 10.40 -55.95 -0.58 -9.82 16 22 C 0.03 0.43 10.56 113.37 1.20 1.63 16 23 N -0.48 -17.41 9.03 -181.84 -1.64 -19.05 16 24 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 25 H 0.10 2.54 7.84 -2.91 -0.02 2.51 16 26 H 0.10 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.08 2.74 7.72 -2.39 -0.02 2.73 16 28 H 0.09 2.94 7.32 -2.39 -0.02 2.92 16 29 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 30 H 0.03 1.40 5.99 -2.39 -0.01 1.39 16 31 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 32 H 0.17 7.02 6.03 -2.91 -0.02 7.00 16 33 H 0.19 5.22 7.63 -2.91 -0.02 5.20 16 34 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -58.30 323.76 5.34 -52.96 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.09 Total: 14.52 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.68 Total: 24.25 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -5.20 Total: -110.28 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.26 Total: -25.01 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -58.30 5.34 -52.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.314 kcal (2) G-P(sol) polarization free energy of solvation -58.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds