Wall clock time and date at job start Mon Mar 30 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00320 * 2 1 4 4 O 1.21592 * 119.99515 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99967 * 180.02562 * 3 2 1 6 6 C 1.39977 * 119.99597 * 185.63520 * 5 3 2 7 7 C 1.39005 * 119.99454 * 144.60387 * 6 5 3 8 8 C 1.38225 * 120.23770 * 180.02562 * 7 6 5 9 9 C 1.37999 * 120.22873 * 359.95469 * 8 7 6 10 10 C 1.39647 * 119.98940 * 0.04612 * 9 8 7 11 11 C 1.47733 * 120.11872 * 180.02562 * 10 9 8 12 12 O 1.21592 * 120.00025 * 144.13807 * 11 10 9 13 13 N 1.34776 * 120.00083 * 324.12797 * 11 10 9 14 14 C 1.46500 * 120.00095 * 4.67919 * 13 11 10 15 15 C 1.36874 * 119.99977 * 184.66743 * 13 11 10 16 16 H 1.07993 * 120.00479 * 359.51309 * 15 13 11 17 17 C 1.39052 * 119.99808 * 179.50487 * 15 13 11 18 18 N 1.31361 * 119.99770 * 33.97282 * 17 15 13 19 19 Si 1.86797 * 120.00272 * 213.96739 * 17 15 13 20 20 H 1.48499 * 109.47041 * 95.00017 * 19 17 15 21 21 H 1.48498 * 109.47180 * 215.00121 * 19 17 15 22 22 H 1.48499 * 109.47200 * 335.00294 * 19 17 15 23 23 C 1.38566 * 119.99941 * 324.63070 * 6 5 3 24 24 H 1.09006 * 109.47388 * 60.00009 * 1 2 3 25 25 H 1.09005 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47271 * 299.99805 * 1 2 3 27 27 H 0.97006 * 119.99726 * 180.02562 * 2 1 3 28 28 H 0.96994 * 120.00567 * 5.63620 * 5 3 2 29 29 H 1.08002 * 119.88257 * 0.02562 * 7 6 5 30 30 H 1.08006 * 119.88634 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.00599 * 180.02562 * 9 8 7 32 32 H 1.09003 * 109.47347 * 91.49468 * 14 13 11 33 33 H 1.09002 * 109.47289 * 211.50169 * 14 13 11 34 34 H 1.09003 * 109.46577 * 331.49660 * 14 13 11 35 35 H 0.97008 * 120.00278 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.11252 * 359.69520 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.1865 2.3735 0.1185 7 6 5.3842 2.4154 0.8229 8 6 6.0792 3.6041 0.9441 9 6 5.5894 4.7573 0.3657 10 6 4.3872 4.7260 -0.3441 11 6 3.8605 5.9588 -0.9649 12 8 3.2801 5.9021 -2.0318 13 7 4.0232 7.1463 -0.3485 14 6 4.8101 7.2299 0.8843 15 6 3.4534 8.2741 -0.8746 16 1 2.8800 8.2139 -1.7877 17 6 3.6127 9.4975 -0.2331 18 7 4.7310 9.7655 0.4018 19 14 2.2364 10.7599 -0.2741 20 1 1.4065 10.6273 0.9502 21 1 2.8183 12.1248 -0.3323 22 1 1.3903 10.5309 -1.4728 23 6 3.6853 3.5258 -0.4653 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9499 -0.8401 -0.0004 28 1 3.9716 0.3312 -0.0834 29 1 5.7730 1.5161 1.2772 30 1 7.0090 3.6303 1.4930 31 1 6.1356 5.6840 0.4622 32 1 5.8493 7.4480 0.6380 33 1 4.4121 8.0239 1.5163 34 1 4.7544 6.2800 1.4160 35 1 4.8423 10.6191 0.8490 36 1 2.7572 3.4942 -1.0168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906470285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:47 Heat of formation + Delta-G solvation = -0.794032 kcal Electronic energy + Delta-G solvation = -21172.252909 eV Core-core repulsion = 17851.059793 eV Total energy + Delta-G solvation = -3321.193117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54426 -39.10178 -37.46521 -34.81427 -34.68687 -34.52576 -31.83358 -30.45417 -29.51871 -26.77044 -26.07825 -24.96555 -22.77465 -22.29882 -20.78058 -19.55645 -18.59798 -17.34058 -16.93037 -15.97625 -15.68337 -15.56996 -14.97219 -14.73032 -14.39319 -14.25087 -14.03719 -13.59161 -13.27021 -13.03673 -12.65202 -12.42380 -12.25624 -11.95722 -11.73150 -11.39855 -11.14455 -11.08594 -10.64656 -10.36592 -10.26069 -10.00471 -9.84408 -9.29541 -8.83314 -8.51781 -8.23418 -7.90605 -7.75885 -6.52035 -3.69431 1.48146 1.78486 2.56253 3.11192 3.18839 3.28345 3.34943 3.80304 4.06685 4.14953 4.45503 4.84973 4.98631 5.11895 5.24499 5.32744 5.38113 5.62878 5.63191 5.75309 5.88216 5.94985 6.22661 6.25562 6.40075 6.49369 6.68563 6.78639 6.81396 6.90697 7.05958 7.15616 7.39902 7.52932 7.83646 8.10696 8.47206 8.50391 9.18084 9.42137 10.04155 10.53598 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.004665 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.254037 B = 6001.291175 C = 6890.924431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.750 5.750 3 C 0.696 3.304 4 O -0.560 6.560 5 N -0.684 5.684 6 C 0.144 3.856 7 C -0.147 4.147 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.073 4.073 11 C 0.465 3.535 12 O -0.592 6.592 13 N -0.427 5.427 14 C 0.088 3.912 15 C -0.315 4.315 16 H 0.111 0.889 17 C 0.040 3.960 18 N -0.849 5.849 19 Si 0.911 3.089 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.077 4.077 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.396 0.604 28 H 0.403 0.597 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.271 0.729 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -18.888 5.021 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.406 5.406 3 C 0.396 3.604 4 O -0.435 6.435 5 N -0.332 5.332 6 C 0.050 3.950 7 C -0.169 4.169 8 C -0.130 4.130 9 C -0.141 4.141 10 C -0.077 4.077 11 C 0.255 3.745 12 O -0.478 6.478 13 N -0.143 5.143 14 C -0.055 4.055 15 C -0.442 4.442 16 H 0.128 0.872 17 C -0.166 4.166 18 N -0.486 5.486 19 Si 0.737 3.263 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.099 4.099 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.238 0.762 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.140 -17.752 4.627 18.346 hybrid contribution 0.021 -0.191 0.192 0.272 sum -0.118 -17.943 4.820 18.580 Atomic orbital electron populations 1.21422 0.77826 1.01888 1.02702 1.44899 1.07892 1.06845 1.80933 1.16019 0.81559 0.84588 0.78197 1.91033 1.67365 1.29705 1.55397 1.42444 1.04809 1.08718 1.77237 1.17314 0.93169 0.85339 0.99153 1.20782 0.96181 0.98734 1.01161 1.20783 0.99712 0.91882 1.00650 1.21870 0.95912 0.99133 0.97202 1.20167 0.95001 0.94841 0.97716 1.17700 0.87150 0.82870 0.86794 1.90600 1.48397 1.86074 1.22756 1.43594 1.43278 1.06225 1.21171 1.22156 0.95720 1.00066 0.87575 1.19752 1.29085 0.84694 1.10690 0.87166 1.25227 0.96575 0.98018 0.96807 1.70222 1.21389 1.23896 1.33080 0.86159 0.82011 0.78862 0.79317 1.20185 1.21056 1.18986 1.21313 1.00611 0.90272 0.97657 0.92082 0.90678 0.92193 0.77088 0.76218 0.86308 0.85733 0.84323 0.92922 0.89980 0.93519 0.91904 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.90 10.70 59.84 0.64 1.54 16 2 N -0.75 -7.07 5.72 -72.07 -0.41 -7.49 16 3 C 0.70 10.06 8.41 -86.92 -0.73 9.33 16 4 O -0.56 -11.20 13.77 5.28 0.07 -11.12 16 5 N -0.68 -8.57 5.34 -14.25 -0.08 -8.65 16 6 C 0.14 2.33 6.30 -83.73 -0.53 1.80 16 7 C -0.15 -2.01 9.96 -39.30 -0.39 -2.40 16 8 C -0.11 -1.62 10.02 -39.67 -0.40 -2.01 16 9 C -0.12 -2.23 7.44 -39.14 -0.29 -2.52 16 10 C -0.07 -1.62 5.35 -105.00 -0.56 -2.18 16 11 C 0.46 12.66 7.34 -12.38 -0.09 12.57 16 12 O -0.59 -18.19 16.42 5.28 0.09 -18.10 16 13 N -0.43 -11.64 3.02 -123.31 -0.37 -12.01 16 14 C 0.09 2.05 7.33 59.85 0.44 2.49 16 15 C -0.32 -9.16 9.40 -15.00 -0.14 -9.30 16 16 H 0.11 3.40 7.35 -52.49 -0.39 3.01 16 17 C 0.04 1.06 4.79 -17.45 -0.08 0.98 16 18 N -0.85 -22.45 10.89 55.50 0.60 -21.85 16 19 Si 0.91 20.86 29.66 -169.99 -5.04 15.81 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.08 -1.61 8.26 -38.96 -0.32 -1.93 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.40 2.16 8.85 -40.82 -0.36 1.80 16 28 H 0.40 3.19 8.84 -40.82 -0.36 2.83 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.14 2.51 5.12 -52.49 -0.27 2.24 16 32 H 0.05 1.19 7.21 -51.93 -0.37 0.82 16 33 H 0.08 2.01 6.07 -51.93 -0.32 1.69 16 34 H 0.05 0.96 5.17 -51.93 -0.27 0.69 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.15 3.44 6.17 -52.49 -0.32 3.12 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -36.58 305.09 -6.91 -43.49 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.91 Total: 6.97 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.46 Total: 8.35 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.26 Total: -49.99 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: 0.16 Total: -29.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.04 Total: 15.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.58 -6.91 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906470285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.692 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds