Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 119.99949 * 2 1 4 4 O 1.21587 * 120.00142 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00106 * 179.97438 * 3 2 1 6 6 C 1.39977 * 119.99983 * 185.31597 * 5 3 2 7 7 C 1.38991 * 119.99602 * 213.31393 * 6 5 3 8 8 C 1.38215 * 120.22063 * 180.02562 * 7 6 5 9 9 C 1.38016 * 120.22219 * 359.67521 * 8 7 6 10 10 C 1.39581 * 119.99436 * 0.60212 * 9 8 7 11 11 C 1.47864 * 120.10809 * 179.69739 * 10 9 8 12 12 O 1.21555 * 119.99402 * 179.72310 * 11 10 9 13 13 N 1.34773 * 120.00254 * 359.72489 * 11 10 9 14 14 C 1.46504 * 119.99652 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46488 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00591 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99513 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00441 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46991 * 59.99990 * 19 17 15 21 21 H 1.48505 * 109.47133 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47136 * 299.99703 * 19 17 15 23 23 C 1.38593 * 120.00026 * 33.33381 * 6 5 3 24 24 H 1.08992 * 109.47214 * 59.99919 * 1 2 3 25 25 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47003 * 299.99816 * 1 2 3 27 27 H 0.97005 * 120.00120 * 179.97438 * 2 1 3 28 28 H 0.97001 * 119.99513 * 5.31842 * 5 3 2 29 29 H 1.07997 * 119.88793 * 0.02562 * 7 6 5 30 30 H 1.07996 * 119.88442 * 179.97438 * 8 7 6 31 31 H 1.08006 * 120.00310 * 180.30095 * 9 8 7 32 32 H 0.96998 * 120.00310 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47272 * 60.00445 * 14 13 11 34 34 H 1.08998 * 109.47407 * 299.99721 * 14 13 11 35 35 H 0.96994 * 120.00399 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.10785 * 0.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.1865 2.3743 0.1128 7 6 5.4053 2.5338 -0.5359 8 6 6.1005 3.7235 -0.4277 9 6 5.5858 4.7634 0.3197 10 6 4.3654 4.6111 0.9797 11 6 3.8149 5.7212 1.7866 12 8 2.7494 5.5881 2.3564 13 7 4.4943 6.8805 1.8902 14 6 3.9490 7.9801 2.6901 15 6 4.8949 9.1524 2.6431 16 1 5.8103 9.0853 2.0740 17 6 4.5910 10.3111 3.3258 18 7 3.4756 10.3934 4.0176 19 14 5.7630 11.7645 3.2670 20 1 5.9288 12.2101 1.8601 21 1 5.2104 12.8792 4.0779 22 1 7.0817 11.3596 3.8168 23 6 3.6642 3.4101 0.8712 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.9716 0.3307 -0.0770 29 1 5.8105 1.7254 -1.1264 30 1 7.0473 3.8414 -0.9337 31 1 6.1297 5.6932 0.3978 32 1 5.3447 6.9866 1.4357 33 1 3.8277 7.6528 3.7227 34 1 2.9810 8.2774 2.2870 35 1 3.2616 11.2087 4.4976 36 1 2.7176 3.2877 1.3765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907803291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -35.640497 kcal Electronic energy + Delta-G solvation = -20382.566692 eV Core-core repulsion = 17059.862519 eV Total energy + Delta-G solvation = -3322.704173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78717 -39.32175 -37.81677 -35.01794 -34.73709 -34.16734 -32.32499 -30.96152 -29.80136 -27.27868 -26.61927 -23.99142 -22.76498 -22.10617 -20.99810 -19.82790 -18.86675 -18.26535 -16.57885 -16.29486 -15.87800 -15.47559 -15.32612 -14.96119 -14.72783 -14.38941 -14.26088 -13.97032 -13.62234 -13.27013 -12.82302 -12.62208 -12.52660 -11.98998 -11.80707 -11.70927 -11.44959 -10.96330 -10.84580 -10.52884 -10.28101 -10.20860 -9.43997 -9.37015 -9.09237 -8.83513 -8.68879 -8.15811 -7.81273 -6.12121 -4.19193 1.03488 1.41175 2.35644 2.90045 3.28575 3.32998 3.34675 3.41726 3.85010 4.13369 4.25200 4.40713 4.86059 4.90386 4.96935 5.23713 5.25548 5.27949 5.35641 5.48943 5.55861 5.62427 5.93385 6.08056 6.16909 6.31691 6.44180 6.59023 6.65167 7.00405 7.37082 7.47658 7.57457 7.62978 7.71269 8.01325 8.30198 8.66494 8.82246 9.13820 9.47028 10.98150 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.003407 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.287320 B = 8215.731701 C = 9067.840337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.748 5.748 3 C 0.696 3.304 4 O -0.559 6.559 5 N -0.686 5.686 6 C 0.151 3.849 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.105 4.105 10 C -0.100 4.100 11 C 0.538 3.462 12 O -0.546 6.546 13 N -0.705 5.705 14 C 0.249 3.751 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.066 4.066 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.397 0.603 28 H 0.405 0.595 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.390 0.610 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -23.405 -10.628 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.403 5.403 3 C 0.396 3.604 4 O -0.433 6.433 5 N -0.334 5.334 6 C 0.057 3.943 7 C -0.154 4.154 8 C -0.126 4.126 9 C -0.124 4.124 10 C -0.104 4.104 11 C 0.323 3.677 12 O -0.426 6.426 13 N -0.353 5.353 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.230 0.770 28 H 0.240 0.760 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.224 0.776 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.871 -22.381 -10.054 24.606 hybrid contribution 1.441 -0.001 -0.294 1.471 sum 3.312 -22.382 -10.348 24.880 Atomic orbital electron populations 1.21454 0.77590 1.02084 1.02813 1.44896 1.08026 1.06808 1.80591 1.16011 0.81441 0.84715 0.78196 1.91059 1.67249 1.29794 1.55226 1.42515 1.04983 1.08490 1.77372 1.17329 0.92794 0.86428 0.97779 1.20911 0.95371 0.98830 1.00314 1.20824 0.99941 0.92485 0.99356 1.21396 0.94948 0.99368 0.96726 1.20168 0.95443 0.95166 0.99629 1.18227 0.85048 0.82822 0.81617 1.90745 1.22148 1.82061 1.47631 1.46402 1.23688 1.14297 1.50927 1.19148 0.94959 0.82381 0.90664 1.21185 1.06427 0.98277 1.32310 0.91916 1.24951 0.95503 0.98703 0.94842 1.69965 1.23298 1.28071 1.30932 0.86468 0.80739 0.81463 0.78188 1.20052 1.21082 1.20066 1.21278 1.00438 0.91269 0.95744 0.92120 0.90527 0.91924 0.76970 0.75968 0.85695 0.85155 0.85156 0.77614 0.95331 0.95296 0.92386 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.76 10.70 59.85 0.64 1.40 16 2 N -0.75 -5.90 5.72 -72.07 -0.41 -6.32 16 3 C 0.70 8.70 8.30 -86.92 -0.72 7.97 16 4 O -0.56 -10.07 14.03 5.29 0.07 -10.00 16 5 N -0.69 -6.96 5.35 -14.25 -0.08 -7.04 16 6 C 0.15 1.99 6.28 -83.73 -0.53 1.47 16 7 C -0.13 -1.41 9.95 -39.31 -0.39 -1.80 16 8 C -0.11 -1.19 10.02 -39.67 -0.40 -1.58 16 9 C -0.10 -1.47 9.54 -39.16 -0.37 -1.84 16 10 C -0.10 -1.80 5.87 -104.99 -0.62 -2.42 16 11 C 0.54 12.20 7.77 -12.32 -0.10 12.10 16 12 O -0.55 -14.68 16.35 5.32 0.09 -14.59 16 13 N -0.70 -15.96 5.50 -62.42 -0.34 -16.30 16 14 C 0.25 6.88 5.43 -5.19 -0.03 6.85 16 15 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.07 -1.15 8.20 -38.98 -0.32 -1.47 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.40 1.58 8.85 -40.82 -0.36 1.22 16 28 H 0.41 2.28 8.83 -40.82 -0.36 1.92 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.63 6.40 -52.48 -0.34 1.30 16 32 H 0.39 7.49 6.35 -40.82 -0.26 7.23 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.15 3.01 6.00 -52.49 -0.31 2.70 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -37.91 317.04 -7.55 -45.46 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.12 Total: 6.79 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -3.25 Total: 6.96 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.10 Total: -55.54 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.16 Total: -24.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.91 -7.55 -45.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.818 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds