Wall clock time and date at job start Mon Mar 30 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 120.00228 * 2 1 4 4 O 1.21597 * 119.99226 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00049 * 180.02562 * 3 2 1 6 6 N 1.40099 * 120.00159 * 0.02562 * 5 3 2 7 7 C 1.29798 * 120.00012 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.47376 * 119.99801 * 179.97438 * 7 6 5 10 10 C 1.39796 * 120.08809 * 0.02562 * 9 7 6 11 11 C 1.37725 * 119.91484 * 180.02562 * 10 9 7 12 12 C 1.39079 * 120.08344 * 0.02562 * 11 10 9 13 13 O 1.35656 * 119.91177 * 179.97438 * 12 11 10 14 14 C 1.34806 * 117.00164 * 5.54986 * 13 12 11 15 15 H 1.08002 * 120.00092 * 354.94165 * 14 13 12 16 16 C 1.38637 * 120.00112 * 174.94530 * 14 13 12 17 17 N 1.31565 * 120.00188 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00052 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47072 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46853 * 119.99605 * 18 16 14 21 21 H 1.48496 * 109.47308 * 239.99768 * 18 16 14 22 22 C 1.39073 * 120.17487 * 0.23653 * 12 11 10 23 23 C 1.37727 * 120.08640 * 359.48710 * 22 12 11 24 24 H 1.09003 * 109.47024 * 299.99586 * 1 2 3 25 25 H 1.08999 * 109.47478 * 59.99429 * 1 2 3 26 26 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 27 27 H 0.97004 * 120.00248 * 180.02562 * 2 1 3 28 28 H 0.97001 * 119.99587 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47257 * 270.00197 * 8 7 6 30 30 H 1.08999 * 109.47132 * 30.00291 * 8 7 6 31 31 H 1.08997 * 109.46912 * 150.00204 * 8 7 6 32 32 H 1.07997 * 120.04652 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.96331 * 179.97438 * 11 10 9 34 34 H 0.96997 * 120.00554 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.95747 * 179.74614 * 22 12 11 36 36 H 1.07997 * 120.04332 * 180.23657 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 7 4.1872 -0.0461 -0.0016 7 6 5.4851 -0.0461 -0.0026 8 6 6.2386 1.2589 -0.0032 9 6 6.2220 -1.3225 -0.0032 10 6 5.5248 -2.5342 -0.0032 11 6 6.2170 -3.7249 -0.0032 12 6 7.6078 -3.7227 -0.0026 13 8 8.2860 -4.8976 -0.0021 14 6 7.5568 -6.0254 -0.1183 15 1 6.4780 -5.9727 -0.1241 16 6 8.1914 -7.2528 -0.2303 17 7 9.5055 -7.3170 -0.2237 18 14 7.1809 -8.8155 -0.3920 19 1 5.7357 -8.4746 -0.3737 20 1 7.5145 -9.4904 -1.6721 21 1 7.4891 -9.7239 0.7415 22 6 8.3050 -2.5194 0.0029 23 6 7.6200 -1.3246 -0.0029 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 3.9716 2.0072 -0.0009 29 1 6.4195 1.5736 -1.0309 30 1 5.6500 2.0186 0.5111 31 1 7.1914 1.1286 0.5099 32 1 4.4448 -2.5367 -0.0023 33 1 5.6792 -4.6614 -0.0028 34 1 9.9496 -8.1757 -0.3024 35 1 9.3849 -2.5219 0.0074 36 1 8.1621 -0.3905 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920377337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:16 Heat of formation + Delta-G solvation = -13.561897 kcal Electronic energy + Delta-G solvation = -20208.583690 eV Core-core repulsion = 16886.836917 eV Total energy + Delta-G solvation = -3321.746773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11332 -40.76700 -39.03773 -37.50165 -35.59514 -34.43840 -33.70279 -31.99279 -30.08100 -29.20370 -27.54461 -27.21580 -23.98507 -23.41343 -22.03373 -20.93362 -19.77913 -19.54789 -18.79725 -18.04675 -16.73028 -16.49885 -16.42337 -16.05382 -15.65644 -15.57048 -15.42457 -15.26624 -14.99649 -14.49991 -14.11962 -14.05053 -13.55569 -13.25664 -13.07431 -13.06840 -12.76371 -12.63439 -12.46501 -12.27821 -12.08456 -11.72485 -11.36860 -11.00991 -10.87929 -10.35094 -9.89496 -9.80996 -8.67802 -8.48741 -6.15134 0.01758 0.65090 1.33434 1.38374 1.48836 1.50995 1.55819 2.13830 2.17844 2.59033 2.87962 3.21203 3.46219 3.60412 4.00810 4.16069 4.19759 4.37585 4.49690 4.54324 4.63783 4.65132 4.77089 4.88123 4.91397 5.02735 5.10791 5.24836 5.31220 5.42628 5.56664 5.67310 5.69531 5.78052 6.01932 6.13643 6.32455 6.96432 7.09585 7.51883 7.73971 8.73603 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.003521 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.518475 B = 7949.644100 C = 9159.673717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.730 5.730 3 C 0.723 3.277 4 O -0.629 6.629 5 N -0.584 5.584 6 N -0.297 5.297 7 C 0.183 3.817 8 C -0.159 4.159 9 C -0.143 4.143 10 C -0.026 4.026 11 C -0.250 4.250 12 C 0.133 3.867 13 O -0.222 6.222 14 C -0.413 4.413 15 H 0.106 0.894 16 C -0.019 4.019 17 N -0.915 5.915 18 Si 1.016 2.984 19 H -0.250 1.250 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.205 4.205 23 C -0.025 4.025 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.415 0.585 28 H 0.404 0.596 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.274 0.726 35 H 0.125 0.875 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 12.399 0.113 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.385 5.385 3 C 0.423 3.577 4 O -0.509 6.509 5 N -0.332 5.332 6 N -0.108 5.108 7 C -0.005 4.005 8 C -0.218 4.218 9 C -0.147 4.147 10 C -0.046 4.046 11 C -0.270 4.270 12 C 0.080 3.920 13 O -0.126 6.126 14 C -0.489 4.489 15 H 0.123 0.877 16 C -0.217 4.217 17 N -0.553 5.553 18 Si 0.836 3.164 19 H -0.173 1.173 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.225 4.225 23 C -0.045 4.045 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.127 0.873 27 H 0.252 0.748 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.354 12.407 0.123 16.818 hybrid contribution 0.895 -0.459 -0.040 1.007 sum -10.459 11.948 0.084 15.879 Atomic orbital electron populations 1.21635 0.77021 1.04196 1.01666 1.44983 1.08463 1.07400 1.77626 1.15675 0.80294 0.84601 0.77137 1.90944 1.66751 1.32232 1.60937 1.46134 1.04388 1.05931 1.76738 1.74544 1.09603 1.06814 1.19842 1.23184 0.89618 0.95482 0.92172 1.21450 1.02499 0.92553 1.05263 1.17978 0.92642 0.90020 1.14017 1.21139 1.00009 0.90489 0.92965 1.21179 0.93363 0.99593 1.12824 1.20175 0.92004 0.87402 0.92377 1.83915 1.36653 1.12307 1.79762 1.21904 0.92047 0.82570 1.52371 0.87698 1.26555 0.97345 1.02137 0.95704 1.70173 1.09690 1.27377 1.48011 0.84553 0.78157 0.75240 0.78472 1.17342 1.19460 1.19458 1.20415 1.00246 0.89932 1.11858 1.21164 0.92276 0.97395 0.93636 0.92823 0.92832 0.87301 0.74823 0.75288 0.87895 0.90407 0.87464 0.84436 0.86042 0.91712 0.85699 0.81498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.70 127.77 1.37 3.02 16 2 N -0.73 -16.08 5.68 -500.18 -2.84 -18.92 16 3 C 0.72 19.73 8.68 179.05 1.55 21.28 16 4 O -0.63 -21.10 17.18 -4.02 -0.07 -21.17 16 5 N -0.58 -13.74 6.12 -184.74 -1.13 -14.87 16 6 N -0.30 -7.08 9.46 -42.88 -0.41 -7.48 16 7 C 0.18 4.05 7.10 45.27 0.32 4.37 16 8 C -0.16 -2.22 9.03 71.24 0.64 -1.57 16 9 C -0.14 -3.95 5.87 -20.12 -0.12 -4.07 16 10 C -0.03 -0.83 9.57 22.53 0.22 -0.62 16 11 C -0.25 -9.97 9.15 22.35 0.20 -9.77 16 12 C 0.13 6.01 6.65 22.67 0.15 6.16 16 13 O -0.22 -12.43 9.75 -21.46 -0.21 -12.64 16 14 C -0.41 -22.67 9.48 67.92 0.64 -22.03 16 15 H 0.11 5.26 5.19 -2.91 -0.02 5.25 16 16 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 17 N -0.92 -53.69 13.67 21.61 0.30 -53.40 16 18 Si 1.02 40.78 29.55 68.60 2.03 42.81 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.21 -7.51 9.97 22.35 0.22 -7.29 16 23 C -0.02 -0.67 9.35 22.53 0.21 -0.46 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.42 8.41 7.87 -92.71 -0.73 7.68 16 28 H 0.40 8.07 6.53 -213.32 -1.39 6.68 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 0.95 6.35 -2.39 -0.02 0.94 16 31 H 0.11 1.17 6.46 -2.39 -0.02 1.16 16 32 H 0.14 3.82 7.55 -2.91 -0.02 3.80 16 33 H 0.12 4.97 5.62 -2.91 -0.02 4.95 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.17 2.96 6.35 -2.91 -0.02 2.94 16 Total: -1.00 -71.94 314.63 2.58 -69.36 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.98 Total: 27.83 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.88 Total: -11.53 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -4.08 Total: -94.67 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.28 Total: -33.80 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -71.94 2.58 -69.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920377337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.803 kcal (2) G-P(sol) polarization free energy of solvation -71.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds