Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00433 * 2 1 4 4 O 1.21581 * 119.99675 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.39431 * 119.99947 * 186.58697 * 5 3 2 7 7 C 1.39155 * 119.92127 * 33.58296 * 6 5 3 8 8 C 1.37639 * 120.07947 * 180.28212 * 7 6 5 9 9 C 1.39823 * 119.92206 * 359.44488 * 8 7 6 10 10 C 1.47471 * 120.08096 * 180.30295 * 9 8 7 11 11 O 1.21626 * 119.99866 * 313.56367 * 10 9 8 12 12 N 1.34772 * 119.99798 * 133.56805 * 10 9 8 13 13 C 1.46494 * 120.00416 * 14.22332 * 12 10 9 14 14 C 1.36904 * 119.99817 * 194.21922 * 12 10 9 15 15 H 1.07995 * 119.99897 * 345.74283 * 14 12 10 16 16 C 1.39028 * 120.00159 * 165.73913 * 14 12 10 17 17 N 1.31381 * 119.99555 * 27.03315 * 16 14 12 18 18 Si 1.86794 * 120.00045 * 207.03338 * 16 14 12 19 19 H 1.48503 * 109.47305 * 90.00362 * 18 16 14 20 20 H 1.48502 * 109.46970 * 210.00059 * 18 16 14 21 21 H 1.48498 * 109.47440 * 330.00265 * 18 16 14 22 22 C 1.39820 * 119.83667 * 0.27920 * 9 8 7 23 23 C 1.37644 * 119.91937 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.47090 * 59.99751 * 1 2 3 25 25 H 1.08999 * 109.47587 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46870 * 300.00107 * 1 2 3 27 27 H 0.96999 * 119.99575 * 180.02562 * 2 1 3 28 28 H 0.97001 * 120.00091 * 6.57701 * 5 3 2 29 29 H 1.08006 * 119.95931 * 0.02562 * 7 6 5 30 30 H 1.08001 * 120.04229 * 179.71831 * 8 7 6 31 31 H 1.08997 * 109.47871 * 96.85401 * 13 12 10 32 32 H 1.09002 * 109.47462 * 216.85713 * 13 12 10 33 33 H 1.09004 * 109.47118 * 336.85190 * 13 12 10 34 34 H 0.97000 * 119.99854 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.03910 * 180.02562 * 22 9 8 36 36 H 1.08003 * 119.95387 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5311 2.2201 -0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.1840 2.3665 0.1380 7 6 3.6613 3.3861 0.9277 8 6 4.3440 4.5736 1.0621 9 6 5.5699 4.7507 0.4132 10 6 6.3076 6.0191 0.5601 11 8 5.7234 7.0794 0.4426 12 7 7.6290 6.0034 0.8246 13 6 8.3942 4.7650 0.6605 14 6 8.2563 7.1448 1.2464 15 1 7.7616 8.0999 1.1499 16 6 9.5300 7.0743 1.7992 17 7 10.3389 6.0954 1.4624 18 14 10.0911 8.3713 3.0207 19 1 9.7400 7.9395 4.3975 20 1 11.5622 8.5456 2.9167 21 1 9.4174 9.6598 2.7192 22 6 6.0948 3.7219 -0.3748 23 6 5.4034 2.5393 -0.5097 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9499 -0.8401 -0.0004 28 1 3.9717 0.3326 -0.0971 29 1 2.7166 3.2469 1.4326 30 1 3.9355 5.3662 1.6715 31 1 8.8829 4.7661 -0.3138 32 1 9.1480 4.6970 1.4449 33 1 7.7211 3.9103 0.7284 34 1 11.2275 6.0459 1.8483 35 1 7.0416 3.8549 -0.8771 36 1 5.8085 1.7441 -1.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931242649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -1.453341 kcal Electronic energy + Delta-G solvation = -20849.639203 eV Core-core repulsion = 17528.417497 eV Total energy + Delta-G solvation = -3321.221707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67003 -39.16710 -37.52261 -34.88973 -34.76720 -34.56881 -31.81170 -30.58572 -29.59816 -26.88618 -26.25050 -24.64400 -22.75306 -22.39761 -20.92665 -19.40905 -18.80638 -17.68916 -17.02449 -16.36535 -15.73665 -15.37908 -15.01179 -14.78208 -14.38885 -14.18461 -13.82983 -13.64005 -13.37035 -13.15278 -12.84253 -12.55188 -12.33762 -12.14490 -11.65262 -11.44236 -11.24683 -10.93945 -10.58036 -10.40312 -10.37796 -10.13081 -9.95700 -9.43114 -8.80226 -8.54655 -8.47021 -7.88093 -7.71553 -6.39977 -3.76400 1.44304 1.80038 2.45771 2.96979 3.16369 3.25035 3.30482 3.80157 3.97772 4.07767 4.36719 4.84704 4.85812 5.07337 5.21091 5.23876 5.28878 5.48853 5.69034 5.75845 5.79012 5.88970 6.10165 6.31466 6.42528 6.42965 6.57804 6.76852 6.82829 6.88623 7.02852 7.32419 7.36089 7.64130 7.70762 8.09451 8.35059 8.49807 9.14209 9.40722 9.97869 10.54954 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.003550 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.001290 B = 7885.079384 C = 8177.456008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.750 5.750 3 C 0.699 3.301 4 O -0.567 6.567 5 N -0.682 5.682 6 C 0.155 3.845 7 C -0.125 4.125 8 C -0.062 4.062 9 C -0.101 4.101 10 C 0.473 3.527 11 O -0.591 6.591 12 N -0.436 5.436 13 C 0.063 3.937 14 C -0.305 4.305 15 H 0.108 0.892 16 C 0.034 3.966 17 N -0.863 5.863 18 Si 0.921 3.079 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.082 4.082 23 C -0.153 4.153 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.398 0.602 28 H 0.404 0.596 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.040 0.960 32 H 0.118 0.882 33 H 0.042 0.958 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -17.722 -1.427 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.405 5.405 3 C 0.399 3.601 4 O -0.443 6.443 5 N -0.330 5.330 6 C 0.061 3.939 7 C -0.146 4.146 8 C -0.082 4.082 9 C -0.105 4.105 10 C 0.262 3.738 11 O -0.477 6.477 12 N -0.153 5.153 13 C -0.080 4.080 14 C -0.433 4.433 15 H 0.125 0.875 16 C -0.169 4.169 17 N -0.502 5.502 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.101 4.101 23 C -0.174 4.174 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.231 0.769 28 H 0.239 0.761 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.919 -16.305 -1.429 19.676 hybrid contribution 0.924 -0.510 0.370 1.119 sum -9.995 -16.815 -1.059 19.590 Atomic orbital electron populations 1.21422 0.77822 1.02027 1.02559 1.44925 1.07934 1.06976 1.80695 1.15974 0.81545 0.84525 0.78041 1.90989 1.67453 1.29948 1.55907 1.42417 1.04829 1.09171 1.76549 1.17464 0.92687 0.86320 0.97450 1.20938 1.00860 0.93427 0.99324 1.21008 0.92935 0.96416 0.97808 1.20259 0.95795 0.95385 0.99105 1.17749 0.82450 0.87963 0.85598 1.90617 1.68717 1.31751 1.56613 1.43577 1.05572 1.10231 1.55896 1.22767 0.96415 0.84657 1.04140 1.19776 0.99639 0.88199 1.35645 0.87473 1.25349 0.95409 0.98428 0.97731 1.70027 1.07029 1.33063 1.40076 0.86007 0.77317 0.80937 0.81022 1.20157 1.21021 1.19173 1.21343 0.99276 0.91906 0.97586 1.20659 0.95801 0.98947 1.02007 0.92206 0.90584 0.92168 0.76919 0.76082 0.85044 0.85318 0.94109 0.86458 0.93939 0.92058 0.84618 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 10.70 59.85 0.64 1.35 16 2 N -0.75 -5.85 5.72 -72.07 -0.41 -6.26 16 3 C 0.70 8.69 8.27 -86.92 -0.72 7.97 16 4 O -0.57 -9.71 14.09 5.29 0.07 -9.64 16 5 N -0.68 -7.62 5.32 -14.21 -0.08 -7.69 16 6 C 0.16 2.32 6.27 -83.72 -0.52 1.80 16 7 C -0.13 -2.16 8.62 -39.46 -0.34 -2.50 16 8 C -0.06 -1.21 9.69 -39.21 -0.38 -1.59 16 9 C -0.10 -2.16 5.28 -104.95 -0.55 -2.71 16 10 C 0.47 12.35 7.15 -12.50 -0.09 12.26 16 11 O -0.59 -17.48 16.67 5.25 0.09 -17.40 16 12 N -0.44 -11.56 3.02 -123.41 -0.37 -11.93 16 13 C 0.06 1.44 7.88 59.84 0.47 1.91 16 14 C -0.31 -8.64 9.41 -14.99 -0.14 -8.78 16 15 H 0.11 3.20 7.37 -52.49 -0.39 2.81 16 16 C 0.03 0.89 5.24 -17.45 -0.09 0.80 16 17 N -0.86 -22.32 10.00 55.50 0.56 -21.77 16 18 Si 0.92 20.56 29.63 -169.99 -5.04 15.52 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.08 -1.45 7.36 -39.21 -0.29 -1.74 16 23 C -0.15 -2.23 9.94 -39.46 -0.39 -2.63 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.40 1.68 8.85 -40.82 -0.36 1.32 16 28 H 0.40 2.85 8.83 -40.82 -0.36 2.49 16 29 H 0.13 2.26 6.46 -52.48 -0.34 1.92 16 30 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.04 0.92 7.96 -51.93 -0.41 0.51 16 32 H 0.12 2.87 5.28 -51.93 -0.27 2.60 16 33 H 0.04 0.84 4.53 -51.93 -0.24 0.60 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.14 2.34 6.06 -52.48 -0.32 2.02 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -35.21 305.76 -6.92 -42.12 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.94 Total: 6.29 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.41 Total: 6.15 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.31 Total: -47.66 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.16 Total: -27.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.04 Total: 15.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.21 -6.92 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931242649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.669 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds