Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00433 * 2 1 4 4 O 1.21581 * 119.99675 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.39431 * 119.99947 * 186.58697 * 5 3 2 7 7 C 1.39155 * 119.92127 * 33.58296 * 6 5 3 8 8 C 1.37639 * 120.07947 * 180.28212 * 7 6 5 9 9 C 1.39823 * 119.92206 * 359.44488 * 8 7 6 10 10 C 1.47471 * 120.08096 * 180.30295 * 9 8 7 11 11 O 1.21626 * 119.99866 * 313.56367 * 10 9 8 12 12 N 1.34772 * 119.99798 * 133.56805 * 10 9 8 13 13 C 1.46494 * 120.00416 * 14.22332 * 12 10 9 14 14 C 1.36904 * 119.99817 * 194.21922 * 12 10 9 15 15 H 1.07995 * 119.99897 * 345.74283 * 14 12 10 16 16 C 1.39028 * 120.00159 * 165.73913 * 14 12 10 17 17 N 1.31381 * 119.99555 * 27.03315 * 16 14 12 18 18 Si 1.86794 * 120.00045 * 207.03338 * 16 14 12 19 19 H 1.48503 * 109.47305 * 90.00362 * 18 16 14 20 20 H 1.48502 * 109.46970 * 210.00059 * 18 16 14 21 21 H 1.48498 * 109.47440 * 330.00265 * 18 16 14 22 22 C 1.39820 * 119.83667 * 0.27920 * 9 8 7 23 23 C 1.37644 * 119.91937 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.47090 * 59.99751 * 1 2 3 25 25 H 1.08999 * 109.47587 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46870 * 300.00107 * 1 2 3 27 27 H 0.96999 * 119.99575 * 180.02562 * 2 1 3 28 28 H 0.97001 * 120.00091 * 6.57701 * 5 3 2 29 29 H 1.08006 * 119.95931 * 0.02562 * 7 6 5 30 30 H 1.08001 * 120.04229 * 179.71831 * 8 7 6 31 31 H 1.08997 * 109.47871 * 96.85401 * 13 12 10 32 32 H 1.09002 * 109.47462 * 216.85713 * 13 12 10 33 33 H 1.09004 * 109.47118 * 336.85190 * 13 12 10 34 34 H 0.97000 * 119.99854 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.03910 * 180.02562 * 22 9 8 36 36 H 1.08003 * 119.95387 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5311 2.2201 -0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.1840 2.3665 0.1380 7 6 3.6613 3.3861 0.9277 8 6 4.3440 4.5736 1.0621 9 6 5.5699 4.7507 0.4132 10 6 6.3076 6.0191 0.5601 11 8 5.7234 7.0794 0.4426 12 7 7.6290 6.0034 0.8246 13 6 8.3942 4.7650 0.6605 14 6 8.2563 7.1448 1.2464 15 1 7.7616 8.0999 1.1499 16 6 9.5300 7.0743 1.7992 17 7 10.3389 6.0954 1.4624 18 14 10.0911 8.3713 3.0207 19 1 9.7400 7.9395 4.3975 20 1 11.5622 8.5456 2.9167 21 1 9.4174 9.6598 2.7192 22 6 6.0948 3.7219 -0.3748 23 6 5.4034 2.5393 -0.5097 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9499 -0.8401 -0.0004 28 1 3.9717 0.3326 -0.0971 29 1 2.7166 3.2469 1.4326 30 1 3.9355 5.3662 1.6715 31 1 8.8829 4.7661 -0.3138 32 1 9.1480 4.6970 1.4449 33 1 7.7211 3.9103 0.7284 34 1 11.2275 6.0459 1.8483 35 1 7.0416 3.8549 -0.8771 36 1 5.8085 1.7441 -1.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931242649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -28.261918 kcal Electronic energy + Delta-G solvation = -20850.801710 eV Core-core repulsion = 17528.417497 eV Total energy + Delta-G solvation = -3322.384214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78016 -40.78607 -39.05844 -36.80602 -35.86335 -35.68000 -33.78511 -32.01354 -30.96462 -28.30581 -27.59898 -26.43540 -24.08636 -23.84262 -21.96193 -21.14569 -19.74950 -19.15014 -18.72538 -18.12928 -16.94141 -16.79254 -16.24519 -16.16937 -16.07048 -15.56757 -15.40415 -15.07989 -14.73662 -14.45843 -14.12437 -13.96290 -13.66711 -13.49995 -13.25000 -13.08749 -13.02211 -12.53644 -12.36095 -12.14037 -11.96999 -11.56334 -11.23566 -10.81046 -10.51163 -10.19173 -10.01323 -9.81859 -9.02957 -8.40679 -5.88139 0.02502 0.43105 1.35289 1.40887 1.52477 1.57451 1.86833 2.11242 2.24120 2.80827 2.89369 3.15934 3.23199 3.88928 3.98200 4.05606 4.37229 4.42884 4.54363 4.54588 4.67513 4.69724 4.98334 5.01751 5.04578 5.18256 5.22300 5.35842 5.37601 5.45316 5.55227 5.62382 5.92999 6.00048 6.06089 6.47478 6.97754 7.09028 7.40293 7.45384 7.97007 8.52715 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.003550 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.001290 B = 7885.079384 C = 8177.456008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.692 3.308 4 O -0.619 6.619 5 N -0.666 5.666 6 C 0.175 3.825 7 C -0.130 4.130 8 C -0.074 4.074 9 C -0.134 4.134 10 C 0.462 3.538 11 O -0.645 6.645 12 N -0.447 5.447 13 C 0.072 3.928 14 C -0.358 4.358 15 H 0.073 0.927 16 C 0.010 3.990 17 N -0.868 5.868 18 Si 0.986 3.014 19 H -0.268 1.268 20 H -0.265 1.265 21 H -0.277 1.277 22 C -0.080 4.080 23 C -0.132 4.132 24 H 0.047 0.953 25 H 0.118 0.882 26 H 0.047 0.953 27 H 0.419 0.581 28 H 0.429 0.571 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.279 0.721 35 H 0.142 0.858 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 -21.573 -1.624 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.392 3.608 4 O -0.498 6.498 5 N -0.315 5.315 6 C 0.079 3.921 7 C -0.150 4.150 8 C -0.094 4.094 9 C -0.138 4.138 10 C 0.253 3.747 11 O -0.535 6.535 12 N -0.163 5.163 13 C -0.069 4.069 14 C -0.485 4.485 15 H 0.091 0.909 16 C -0.193 4.193 17 N -0.505 5.505 18 Si 0.808 3.192 19 H -0.193 1.193 20 H -0.189 1.189 21 H -0.202 1.202 22 C -0.100 4.100 23 C -0.152 4.152 24 H 0.065 0.935 25 H 0.137 0.863 26 H 0.065 0.935 27 H 0.256 0.744 28 H 0.269 0.731 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.447 -20.296 -1.637 22.886 hybrid contribution 0.694 0.517 0.383 0.947 sum -9.753 -19.779 -1.254 22.088 Atomic orbital electron populations 1.21604 0.76887 1.04446 1.01350 1.44804 1.08435 1.06464 1.78640 1.16258 0.81707 0.85024 0.77768 1.90975 1.68479 1.32218 1.58135 1.42209 1.04596 1.08924 1.75775 1.17531 0.92578 0.86780 0.95226 1.20921 1.00636 0.93346 1.00113 1.20908 0.92906 0.97247 0.98308 1.19938 0.96639 0.94550 1.02698 1.18565 0.82486 0.89208 0.84459 1.90547 1.69758 1.34291 1.58889 1.43796 1.06124 1.10784 1.55631 1.22721 0.96434 0.84453 1.03341 1.19644 1.01007 0.88126 1.39705 0.90857 1.26052 0.94601 1.00743 0.97910 1.70070 1.07333 1.33622 1.39512 0.85078 0.77573 0.77937 0.78571 1.19304 1.18921 1.20208 1.21414 0.99753 0.92041 0.96745 1.21017 0.94689 0.98615 1.00900 0.93450 0.86316 0.93457 0.74355 0.73106 0.85199 0.87098 0.94220 0.87869 0.90649 0.91004 0.84019 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.70 127.77 1.37 2.44 16 2 N -0.73 -8.74 5.72 -500.20 -2.86 -11.60 16 3 C 0.69 15.30 8.27 179.05 1.48 16.78 16 4 O -0.62 -20.54 14.09 -3.97 -0.06 -20.60 16 5 N -0.67 -12.19 5.32 -317.15 -1.69 -13.88 16 6 C 0.18 4.72 6.27 38.37 0.24 4.96 16 7 C -0.13 -4.42 8.62 22.35 0.19 -4.23 16 8 C -0.07 -3.01 9.69 22.51 0.22 -2.79 16 9 C -0.13 -5.86 5.28 -20.08 -0.11 -5.97 16 10 C 0.46 25.51 7.15 86.68 0.62 26.13 16 11 O -0.64 -41.13 16.67 -4.11 -0.07 -41.20 16 12 N -0.45 -24.73 3.02 -662.60 -2.00 -26.74 16 13 C 0.07 3.32 7.88 127.77 1.01 4.33 16 14 C -0.36 -21.27 9.41 84.09 0.79 -20.48 16 15 H 0.07 4.73 7.37 -2.91 -0.02 4.71 16 16 C 0.01 0.55 5.24 84.95 0.45 0.99 16 17 N -0.87 -44.62 10.00 21.68 0.22 -44.40 16 18 Si 0.99 42.53 29.63 68.60 2.03 44.56 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.08 -2.72 7.36 22.51 0.17 -2.55 16 23 C -0.13 -3.31 9.94 22.35 0.22 -3.09 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.42 1.53 8.85 -92.71 -0.82 0.71 16 28 H 0.43 3.69 8.83 -92.71 -0.82 2.87 16 29 H 0.13 4.48 6.46 -2.91 -0.02 4.46 16 30 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 32 H 0.10 5.05 5.28 -2.39 -0.01 5.04 16 33 H 0.08 2.91 4.53 -2.38 -0.01 2.90 16 34 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 35 H 0.14 4.63 6.06 -2.91 -0.02 4.61 16 36 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -82.71 305.76 1.73 -80.99 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.49 Total: 16.35 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.64 Total: 16.52 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -6.33 Total: -96.62 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -0.12 Total: -61.80 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -82.71 1.73 -80.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931242649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.726 kcal (2) G-P(sol) polarization free energy of solvation -82.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds