Wall clock time and date at job start Mon Mar 30 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99673 * 2 1 4 4 N 1.34775 * 120.00212 * 179.97438 * 2 1 3 5 5 N 1.40097 * 119.99911 * 180.02562 * 4 2 1 6 6 C 1.34775 * 119.99911 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99880 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99913 * 359.97438 * 6 5 4 9 9 C 1.39947 * 119.99903 * 185.33515 * 8 6 5 10 10 C 1.38870 * 120.06931 * 33.26963 * 9 8 6 11 11 C 1.38115 * 119.92544 * 180.02562 * 10 9 8 12 12 C 1.38277 * 120.07460 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.93151 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47089 * 89.99969 * 13 12 11 15 15 H 1.08007 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37867 * 120.00081 * 180.27350 * 14 13 12 17 17 N 1.31520 * 120.00230 * 359.73177 * 16 14 13 18 18 Si 1.86804 * 119.99989 * 179.72436 * 16 14 13 19 19 H 1.48498 * 109.47389 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46984 * 120.00456 * 18 16 14 21 21 H 1.48507 * 109.47138 * 240.00141 * 18 16 14 22 22 C 1.38281 * 120.14069 * 0.25600 * 12 11 10 23 23 C 1.38119 * 120.06886 * 359.48999 * 22 12 11 24 24 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47739 * 300.00643 * 1 2 3 26 26 H 1.09004 * 109.46874 * 60.00043 * 1 2 3 27 27 H 0.96997 * 119.99570 * 359.97438 * 4 2 1 28 28 H 0.97003 * 120.00234 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00353 * 5.33371 * 8 6 5 30 30 H 1.07997 * 120.03495 * 359.97438 * 10 9 8 31 31 H 1.07999 * 119.95786 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47109 * 330.00251 * 13 12 11 33 33 H 1.08992 * 109.47163 * 209.99793 * 13 12 11 34 34 H 0.97000 * 119.99906 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.96721 * 179.74834 * 22 12 11 36 36 H 1.07998 * 120.04006 * 180.22976 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 7 3.5819 -1.1671 0.0011 6 6 4.2558 -2.3343 0.0011 7 8 5.4717 -2.3342 0.0011 8 7 3.5820 -3.5014 0.0011 9 6 4.2772 -4.7108 0.1138 10 6 5.4381 -4.7778 0.8729 11 6 6.1222 -5.9728 0.9817 12 6 5.6520 -7.1016 0.3361 13 6 6.4013 -8.4036 0.4565 14 6 5.8828 -9.1736 1.6437 15 1 5.0897 -8.7615 2.2501 16 6 6.4244 -10.4017 1.9587 17 7 7.3899 -10.9037 1.2201 18 14 5.7870 -11.3527 3.4349 19 1 4.7068 -10.5764 4.0950 20 1 5.2510 -12.6628 2.9858 21 1 6.8962 -11.5752 4.3969 22 6 4.4990 -7.0370 -0.4245 23 6 3.8074 -5.8464 -0.5330 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6959 -2.0072 0.0013 28 1 4.0669 -0.3270 0.0007 29 1 2.6152 -3.5033 -0.0770 30 1 5.8060 -3.8964 1.3770 31 1 7.0253 -6.0254 1.5716 32 1 7.4637 -8.2003 0.5912 33 1 6.2559 -8.9916 -0.4496 34 1 7.7712 -11.7676 1.4420 35 1 4.1366 -7.9194 -0.9308 36 1 2.9049 -5.7973 -1.1241 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:19 Heat of formation + Delta-G solvation = -4.726432 kcal Electronic energy + Delta-G solvation = -20151.854670 eV Core-core repulsion = 16830.491032 eV Total energy + Delta-G solvation = -3321.363639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06444 -39.82751 -38.34415 -36.08702 -35.00342 -33.02642 -32.24045 -30.46160 -30.33587 -29.18293 -26.63944 -23.59238 -22.50830 -21.92819 -21.62059 -20.17022 -19.40302 -18.21559 -17.04830 -16.31913 -16.24532 -16.09407 -15.50530 -15.25536 -14.95828 -14.46857 -14.24303 -14.03109 -13.26054 -13.11676 -12.99805 -12.87217 -12.65821 -12.13923 -11.75117 -11.41743 -11.31556 -10.97508 -10.78346 -10.60566 -10.46570 -10.35527 -10.00433 -9.51404 -9.32198 -8.80245 -8.43909 -8.34043 -7.44375 -6.04827 -4.09016 1.42624 1.82939 1.98938 2.03303 2.69930 2.93406 3.28376 3.36170 3.40634 3.94218 4.35464 4.47420 4.53376 4.59124 4.83308 5.22065 5.28815 5.34301 5.48163 5.78989 5.84936 5.98553 6.02839 6.15199 6.27658 6.59675 6.79433 6.83156 6.88532 7.12593 7.17743 7.31549 7.49895 7.66418 7.82326 7.84474 7.90966 8.20640 8.31017 8.96598 9.54909 11.04825 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.002974 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.116812 B = 9414.110268 C = 9702.345400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.512 3.488 3 O -0.541 6.541 4 N -0.530 5.530 5 N -0.535 5.535 6 C 0.710 3.290 7 O -0.550 6.550 8 N -0.677 5.677 9 C 0.117 3.883 10 C -0.116 4.116 11 C -0.106 4.106 12 C -0.040 4.040 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.107 4.107 23 C -0.142 4.142 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.420 0.580 28 H 0.443 0.557 29 H 0.395 0.605 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.123 0.877 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.835 17.417 -3.413 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.300 3.700 3 O -0.415 6.415 4 N -0.283 5.283 5 N -0.293 5.293 6 C 0.410 3.590 7 O -0.422 6.422 8 N -0.327 5.327 9 C 0.024 3.976 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.041 4.041 13 C 0.010 3.990 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.125 4.125 23 C -0.163 4.163 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.262 0.738 28 H 0.290 0.710 29 H 0.230 0.770 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.423 17.911 -3.416 23.249 hybrid contribution -0.925 -0.685 0.750 1.374 sum -15.348 17.226 -2.666 23.225 Atomic orbital electron populations 1.21799 0.89113 1.04981 1.06249 1.21156 0.90757 0.82194 0.75924 1.90785 1.70296 1.30783 1.49683 1.45209 0.95598 1.10306 1.77156 1.44687 0.93823 1.09261 1.81495 1.15715 0.85156 0.79669 0.78486 1.91083 1.10157 1.83905 1.57008 1.42442 1.09374 1.03921 1.76918 1.17266 0.95928 0.83607 1.00782 1.21019 0.95360 0.98491 0.98729 1.21007 1.00182 0.91532 0.99735 1.20730 0.94320 0.96835 0.92206 1.18368 0.95101 0.87723 0.97827 1.21098 1.19601 1.02616 1.11560 0.92397 1.25020 0.95018 0.97539 0.96824 1.69971 1.25844 1.18604 1.38863 0.86487 0.78840 0.79790 0.82632 1.19686 1.20970 1.20949 1.20880 0.95372 0.96480 0.99817 1.20688 1.01533 0.92748 1.01318 0.89966 0.87792 0.87818 0.73818 0.71024 0.76958 0.85682 0.85943 0.95222 0.95259 0.92887 0.85870 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.38 10.39 36.01 0.37 -0.01 16 2 C 0.51 3.65 8.06 -10.99 -0.09 3.56 16 3 O -0.54 -6.40 16.94 5.55 0.09 -6.30 16 4 N -0.53 -3.49 6.25 31.22 0.20 -3.29 16 5 N -0.53 -5.45 6.26 27.63 0.17 -5.27 16 6 C 0.71 9.33 8.41 -86.92 -0.73 8.60 16 7 O -0.55 -9.60 14.86 5.29 0.08 -9.53 16 8 N -0.68 -7.86 5.30 -14.22 -0.08 -7.94 16 9 C 0.12 1.82 6.28 -83.68 -0.53 1.29 16 10 C -0.12 -2.09 8.66 -39.39 -0.34 -2.43 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 13 C 0.05 1.18 5.10 -29.03 -0.15 1.04 16 14 C -0.51 -14.07 9.09 -34.44 -0.31 -14.39 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 18 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.11 -1.97 9.69 -39.61 -0.38 -2.36 16 23 C -0.14 -2.17 9.96 -39.39 -0.39 -2.57 16 24 H 0.08 -0.02 7.91 -51.93 -0.41 -0.43 16 25 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.42 1.40 6.55 -182.60 -1.20 0.21 16 28 H 0.44 4.78 8.10 -182.60 -1.48 3.30 16 29 H 0.40 2.88 6.76 -40.82 -0.28 2.61 16 30 H 0.13 2.25 6.41 -52.49 -0.34 1.92 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -35.56 318.04 -8.78 -44.34 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.19 Total: 2.08 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.56 Total: -9.64 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 1.03 Total: -41.99 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.17 Total: -15.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.56 -8.78 -44.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.614 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds