Wall clock time and date at job start Mon Mar 30 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99673 * 2 1 4 4 N 1.34775 * 120.00212 * 179.97438 * 2 1 3 5 5 N 1.40097 * 119.99911 * 180.02562 * 4 2 1 6 6 C 1.34775 * 119.99911 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99880 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99913 * 359.97438 * 6 5 4 9 9 C 1.39947 * 119.99903 * 185.33515 * 8 6 5 10 10 C 1.38870 * 120.06931 * 33.26963 * 9 8 6 11 11 C 1.38115 * 119.92544 * 180.02562 * 10 9 8 12 12 C 1.38277 * 120.07460 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.93151 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47089 * 89.99969 * 13 12 11 15 15 H 1.08007 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37867 * 120.00081 * 180.27350 * 14 13 12 17 17 N 1.31520 * 120.00230 * 359.73177 * 16 14 13 18 18 Si 1.86804 * 119.99989 * 179.72436 * 16 14 13 19 19 H 1.48498 * 109.47389 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46984 * 120.00456 * 18 16 14 21 21 H 1.48507 * 109.47138 * 240.00141 * 18 16 14 22 22 C 1.38281 * 120.14069 * 0.25600 * 12 11 10 23 23 C 1.38119 * 120.06886 * 359.48999 * 22 12 11 24 24 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47739 * 300.00643 * 1 2 3 26 26 H 1.09004 * 109.46874 * 60.00043 * 1 2 3 27 27 H 0.96997 * 119.99570 * 359.97438 * 4 2 1 28 28 H 0.97003 * 120.00234 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00353 * 5.33371 * 8 6 5 30 30 H 1.07997 * 120.03495 * 359.97438 * 10 9 8 31 31 H 1.07999 * 119.95786 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47109 * 330.00251 * 13 12 11 33 33 H 1.08992 * 109.47163 * 209.99793 * 13 12 11 34 34 H 0.97000 * 119.99906 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.96721 * 179.74834 * 22 12 11 36 36 H 1.07998 * 120.04006 * 180.22976 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 7 3.5819 -1.1671 0.0011 6 6 4.2558 -2.3343 0.0011 7 8 5.4717 -2.3342 0.0011 8 7 3.5820 -3.5014 0.0011 9 6 4.2772 -4.7108 0.1138 10 6 5.4381 -4.7778 0.8729 11 6 6.1222 -5.9728 0.9817 12 6 5.6520 -7.1016 0.3361 13 6 6.4013 -8.4036 0.4565 14 6 5.8828 -9.1736 1.6437 15 1 5.0897 -8.7615 2.2501 16 6 6.4244 -10.4017 1.9587 17 7 7.3899 -10.9037 1.2201 18 14 5.7870 -11.3527 3.4349 19 1 4.7068 -10.5764 4.0950 20 1 5.2510 -12.6628 2.9858 21 1 6.8962 -11.5752 4.3969 22 6 4.4990 -7.0370 -0.4245 23 6 3.8074 -5.8464 -0.5330 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6959 -2.0072 0.0013 28 1 4.0669 -0.3270 0.0007 29 1 2.6152 -3.5033 -0.0770 30 1 5.8060 -3.8964 1.3770 31 1 7.0253 -6.0254 1.5716 32 1 7.4637 -8.2003 0.5912 33 1 6.2559 -8.9916 -0.4496 34 1 7.7712 -11.7676 1.4420 35 1 4.1366 -7.9194 -0.9308 36 1 2.9049 -5.7973 -1.1241 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:18 Heat of formation + Delta-G solvation = -30.976585 kcal Electronic energy + Delta-G solvation = -20152.992962 eV Core-core repulsion = 16830.491032 eV Total energy + Delta-G solvation = -3322.501931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.05297 -40.66986 -39.65238 -36.96449 -36.35820 -34.92875 -32.98809 -32.02711 -31.76533 -29.69213 -28.35685 -25.31867 -23.91008 -22.98964 -22.50893 -21.54984 -20.35197 -19.06094 -18.49094 -18.01499 -17.11557 -16.93266 -16.77838 -16.38802 -16.17016 -15.91328 -15.50233 -15.00979 -14.60852 -14.51700 -14.27404 -13.74040 -13.37887 -13.34347 -13.23074 -13.14293 -12.63034 -12.53092 -12.46006 -12.12746 -11.86657 -11.59050 -11.42484 -11.24372 -11.02031 -10.59177 -9.75712 -9.62331 -8.86377 -8.16663 -6.31175 0.43327 0.57958 0.74734 1.37930 1.41361 1.42256 1.55442 1.76472 1.88259 2.41777 3.01516 3.13015 3.42550 3.92221 4.06629 4.15656 4.40058 4.50717 4.56146 4.62845 4.68423 4.71104 5.06797 5.13644 5.18304 5.29296 5.33627 5.41133 5.44232 5.61217 5.61988 5.77681 6.10264 6.12320 6.22760 6.27197 6.50718 6.82228 7.09109 7.26167 7.37503 8.91668 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.002974 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.116812 B = 9414.110268 C = 9702.345400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.511 3.489 3 O -0.592 6.592 4 N -0.517 5.517 5 N -0.531 5.531 6 C 0.711 3.289 7 O -0.598 6.598 8 N -0.659 5.659 9 C 0.134 3.866 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.073 4.073 13 C 0.055 3.945 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.280 1.280 22 C -0.111 4.111 23 C -0.122 4.122 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.438 0.562 28 H 0.441 0.559 29 H 0.421 0.579 30 H 0.122 0.878 31 H 0.109 0.891 32 H -0.003 1.003 33 H 0.008 0.992 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.675 18.158 -3.348 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.301 3.699 3 O -0.471 6.471 4 N -0.272 5.272 5 N -0.285 5.285 6 C 0.411 3.589 7 O -0.473 6.473 8 N -0.310 5.310 9 C 0.040 3.960 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.073 4.073 13 C 0.018 3.982 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.206 1.206 22 C -0.130 4.130 23 C -0.142 4.142 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.283 0.717 28 H 0.287 0.713 29 H 0.261 0.739 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.349 18.659 -3.356 26.384 hybrid contribution 0.203 -0.763 0.675 1.039 sum -18.146 17.895 -2.680 25.627 Atomic orbital electron populations 1.21905 0.84784 1.07590 1.06983 1.22188 0.92453 0.81193 0.74108 1.90774 1.71634 1.32682 1.51984 1.45375 0.93522 1.11492 1.76838 1.44480 0.95913 1.08107 1.80019 1.15740 0.84639 0.80380 0.78190 1.91063 1.12510 1.84793 1.58914 1.42119 1.10459 1.02183 1.76283 1.17289 0.94820 0.85108 0.98786 1.21013 0.96497 0.97330 0.99602 1.20897 1.00393 0.92257 1.00304 1.20405 0.96197 0.95229 0.95519 1.18107 0.93886 0.89818 0.96339 1.21425 1.19532 1.03106 1.12179 0.92436 1.25956 0.95143 0.98646 0.99877 1.70099 1.27174 1.19187 1.40785 0.85371 0.78401 0.78364 0.78751 1.18657 1.20061 1.20585 1.20995 0.94533 0.98261 0.99179 1.21010 1.02254 0.90739 1.00179 0.86468 0.87030 0.86883 0.71728 0.71292 0.73943 0.85985 0.87334 0.98417 0.97379 0.92641 0.85248 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.11 10.39 71.24 0.74 0.63 16 2 C 0.51 5.91 8.06 87.66 0.71 6.61 16 3 O -0.59 -13.35 16.94 -3.05 -0.05 -13.40 16 4 N -0.52 -5.13 6.25 -173.53 -1.09 -6.21 16 5 N -0.53 -9.79 6.26 -184.75 -1.16 -10.95 16 6 C 0.71 17.34 8.41 179.06 1.51 18.84 16 7 O -0.60 -20.65 14.86 -4.00 -0.06 -20.71 16 8 N -0.66 -13.01 5.30 -317.17 -1.68 -14.70 16 9 C 0.13 3.83 6.28 38.15 0.24 4.07 16 10 C -0.12 -4.45 8.66 22.39 0.19 -4.25 16 11 C -0.12 -4.97 9.69 22.25 0.22 -4.75 16 12 C -0.07 -3.20 5.07 -19.84 -0.10 -3.30 16 13 C 0.06 2.98 5.10 29.10 0.15 3.13 16 14 C -0.52 -29.76 9.09 25.60 0.23 -29.53 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -56.34 13.29 21.44 0.28 -56.06 16 18 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.11 -3.97 9.69 22.25 0.22 -3.75 16 23 C -0.12 -3.28 9.96 22.39 0.22 -3.05 16 24 H 0.12 -0.72 7.91 -2.39 -0.02 -0.74 16 25 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.44 0.87 6.55 -213.33 -1.40 -0.53 16 28 H 0.44 9.17 8.10 -213.32 -1.73 7.44 16 29 H 0.42 4.00 6.76 -92.71 -0.63 3.37 16 30 H 0.12 4.45 6.41 -2.91 -0.02 4.43 16 31 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 32 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 33 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -81.85 318.04 0.45 -81.40 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.61 Total: 9.44 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.78 Total: -14.80 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -3.64 Total: -87.91 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.11 Total: -34.11 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -81.85 0.45 -81.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.426 kcal (2) G-P(sol) polarization free energy of solvation -81.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds