Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35518 * 116.99755 * 2 1 4 4 C 1.39644 * 120.49021 * 180.02562 * 3 2 1 5 5 C 1.39145 * 118.20551 * 180.02562 * 4 3 2 6 6 C 1.48446 * 120.51634 * 179.97438 * 5 4 3 7 7 O 1.21479 * 120.00118 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99842 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99989 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47002 * 184.66830 * 9 8 6 11 11 C 1.50696 * 115.55193 * 297.93943 * 10 9 8 12 12 H 1.08001 * 120.00063 * 95.21366 * 11 10 9 13 13 C 1.37879 * 119.99802 * 275.21021 * 11 10 9 14 14 N 1.31514 * 119.99885 * 7.13436 * 13 11 10 15 15 Si 1.86793 * 120.00077 * 187.13481 * 13 11 10 16 16 H 1.48507 * 109.47076 * 270.00061 * 15 13 11 17 17 H 1.48500 * 109.47116 * 30.00288 * 15 13 11 18 18 H 1.48502 * 109.47312 * 150.00186 * 15 13 11 19 19 C 1.53009 * 117.49380 * 83.60601 * 10 9 8 20 20 C 1.53000 * 117.49581 * 152.26424 * 10 9 8 21 21 N 1.33276 * 118.96573 * 0.27958 * 5 4 3 22 22 C 1.31540 * 120.88543 * 359.43390 * 21 5 4 23 23 N 1.31889 * 121.98719 * 0.58284 * 22 21 5 24 24 H 1.09004 * 109.47064 * 300.00002 * 1 2 3 25 25 H 1.08995 * 109.47280 * 60.00079 * 1 2 3 26 26 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.89734 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99966 * 0.02562 * 8 6 5 29 29 H 1.08996 * 109.47106 * 64.66760 * 9 8 6 30 30 H 1.08998 * 109.46754 * 304.66975 * 9 8 6 31 31 H 0.97004 * 120.00131 * 355.39941 * 14 13 11 32 32 H 1.09000 * 117.49392 * 214.99864 * 19 10 9 33 33 H 1.08997 * 117.50296 * 0.02562 * 19 10 9 34 34 H 1.09003 * 117.49927 * 359.97438 * 20 10 9 35 35 H 1.08997 * 117.49643 * 144.97660 * 20 10 9 36 36 H 1.07998 * 119.00511 * 180.26706 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2926 -0.0005 5 6 4.0197 2.5566 0.0000 6 6 5.4966 2.7067 0.0001 7 8 6.2073 1.7215 -0.0009 8 7 6.0489 3.9360 0.0012 9 6 7.5065 4.0842 0.0006 10 6 7.8685 5.5660 0.1195 11 6 7.3929 6.4439 -1.0093 12 1 6.4619 6.9837 -0.9182 13 6 8.1464 6.5580 -2.1583 14 7 9.2049 5.7964 -2.3288 15 14 7.6638 7.7942 -3.4728 16 1 6.7383 7.1520 -4.4405 17 1 6.9887 8.9543 -2.8374 18 1 8.8806 8.2593 -4.1857 19 6 7.9005 6.1750 1.5228 20 6 9.2082 5.9159 0.7704 21 7 3.2303 3.6304 0.0068 22 6 1.9209 3.5058 0.0016 23 7 1.3313 2.3261 0.0011 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0480 0.4013 -0.0014 28 1 5.4814 4.7227 0.0023 29 1 7.9120 3.6846 -0.9288 30 1 7.9274 3.5385 0.8450 31 1 9.4944 5.2022 -1.6188 32 1 7.5777 7.2107 1.6294 33 1 7.6641 5.5200 2.3613 34 1 9.8315 5.0904 1.1143 35 1 9.7458 6.7808 0.3818 36 1 1.3101 4.3965 0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -2.797129 kcal Electronic energy + Delta-G solvation = -20820.039557 eV Core-core repulsion = 17498.759580 eV Total energy + Delta-G solvation = -3321.279978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43925 -39.33621 -38.44903 -37.00622 -33.81682 -33.18012 -31.94152 -31.92679 -28.04611 -26.88287 -25.00862 -24.40488 -24.11849 -21.42729 -20.67438 -19.74637 -18.70975 -18.28065 -16.87172 -16.49699 -16.03884 -15.68578 -15.52839 -15.06465 -14.85338 -14.50730 -14.16374 -13.88470 -13.77178 -13.16793 -12.80810 -12.41173 -12.35232 -11.96054 -11.77648 -11.01832 -10.96369 -10.82827 -10.51809 -10.47846 -10.22411 -10.15220 -9.74122 -9.46270 -9.36048 -8.75721 -8.51266 -8.44187 -8.28870 -6.40930 -4.16943 0.44506 0.86219 2.52948 2.94996 3.39422 3.40766 3.43572 3.58950 3.81148 3.83031 4.01203 4.46528 4.67161 4.86595 4.91862 4.96682 5.04939 5.19972 5.26676 5.33074 5.43593 5.78331 5.94024 6.10688 6.20158 6.30697 6.51159 6.52462 6.58056 6.82351 6.82678 7.00000 7.13966 7.20886 7.76636 8.08732 8.15337 8.34200 8.56446 8.80474 9.59084 10.98464 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022810 B = 0.004221 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.257506 B = 6632.389438 C = 7151.442286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.299 6.299 3 C 0.360 3.640 4 C -0.188 4.188 5 C 0.169 3.831 6 C 0.556 3.444 7 O -0.540 6.540 8 N -0.668 5.668 9 C 0.154 3.846 10 C 0.004 3.996 11 C -0.576 4.576 12 H 0.055 0.945 13 C 0.030 3.970 14 N -0.901 5.901 15 Si 1.069 2.931 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.192 4.192 20 C -0.171 4.171 21 N -0.513 5.513 22 C 0.334 3.666 23 N -0.569 5.569 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.416 0.584 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.276 0.724 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.336 -6.680 5.353 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.203 6.203 3 C 0.172 3.828 4 C -0.212 4.212 5 C 0.025 3.975 6 C 0.338 3.662 7 O -0.418 6.418 8 N -0.316 5.316 9 C 0.031 3.969 10 C 0.003 3.997 11 C -0.614 4.614 12 H 0.074 0.926 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.897 3.103 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.230 4.230 20 C -0.209 4.209 21 N -0.233 5.233 22 C 0.046 3.954 23 N -0.300 5.300 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.183 0.817 28 H 0.253 0.747 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.795 -6.327 3.840 16.543 hybrid contribution -0.536 -0.811 1.521 1.805 sum -15.332 -7.138 5.360 17.741 Atomic orbital electron populations 1.22980 0.76478 1.03456 1.02860 1.86261 1.23499 1.23723 1.86775 1.20020 0.89230 0.85131 0.88406 1.21915 0.92566 1.00737 1.05957 1.21656 0.95506 0.88411 0.91974 1.17700 0.84939 0.84609 0.78957 1.90768 1.61264 1.38293 1.51430 1.45800 1.09410 1.07258 1.69180 1.21196 0.77743 0.97537 1.00421 1.19308 0.97247 0.90986 0.92151 1.21221 1.09244 1.29726 1.01200 0.92639 1.25774 0.94481 0.98305 0.99131 1.70713 1.25191 1.22408 1.35133 0.83547 0.75872 0.75513 0.75369 1.21502 1.21381 1.21015 1.22908 1.03215 1.00991 0.95864 1.22758 0.90813 1.02312 1.05005 1.68445 1.06480 1.33029 1.15379 1.24728 0.88148 0.93741 0.88813 1.68036 1.42019 0.99344 1.20639 0.91898 0.91846 0.88152 0.81747 0.74717 0.91311 0.93566 0.91280 0.89917 0.91377 0.91240 0.89459 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.41 101.05 1.05 1.34 16 2 O -0.30 -3.41 10.49 -18.25 -0.19 -3.60 16 3 C 0.36 4.70 7.54 -16.68 -0.13 4.57 16 4 C -0.19 -2.72 9.68 -38.72 -0.37 -3.09 16 5 C 0.17 2.76 6.79 -82.70 -0.56 2.19 16 6 C 0.56 10.77 7.83 -12.05 -0.09 10.67 16 7 O -0.54 -11.67 16.42 5.38 0.09 -11.58 16 8 N -0.67 -13.48 5.45 -61.05 -0.33 -13.82 16 9 C 0.15 3.43 5.43 -4.04 -0.02 3.40 16 10 C 0.00 0.09 0.99 -155.66 -0.15 -0.06 16 11 C -0.58 -14.91 8.44 -34.44 -0.29 -15.20 16 12 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 13 C 0.03 0.80 5.39 -17.82 -0.10 0.70 16 14 N -0.90 -25.73 13.57 55.43 0.75 -24.98 16 15 Si 1.07 24.20 29.91 -169.99 -5.08 19.12 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.19 -3.95 9.96 -26.68 -0.27 -4.22 16 20 C -0.17 -3.75 8.74 -26.69 -0.23 -3.98 16 21 N -0.51 -7.63 9.70 -11.20 -0.11 -7.74 16 22 C 0.33 4.00 12.27 -92.29 -1.13 2.86 16 23 N -0.57 -6.99 9.36 -14.64 -0.14 -7.12 16 24 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 25 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.16 2.29 7.73 -52.49 -0.41 1.89 16 28 H 0.42 8.18 7.61 -40.82 -0.31 7.87 16 29 H 0.07 1.71 7.82 -51.93 -0.41 1.31 16 30 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.28 7.81 6.19 -40.82 -0.25 7.56 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 36 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -30.39 319.94 -6.87 -37.27 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.38 Total: 8.42 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.30 Total: -0.80 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.17 Total: -53.65 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.10 Total: -15.18 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.39 -6.87 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.469 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds