Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35518 * 116.99755 * 2 1 4 4 C 1.39644 * 120.49021 * 180.02562 * 3 2 1 5 5 C 1.39145 * 118.20551 * 180.02562 * 4 3 2 6 6 C 1.48446 * 120.51634 * 179.97438 * 5 4 3 7 7 O 1.21479 * 120.00118 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99842 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99989 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47002 * 184.66830 * 9 8 6 11 11 C 1.50696 * 115.55193 * 297.93943 * 10 9 8 12 12 H 1.08001 * 120.00063 * 95.21366 * 11 10 9 13 13 C 1.37879 * 119.99802 * 275.21021 * 11 10 9 14 14 N 1.31514 * 119.99885 * 7.13436 * 13 11 10 15 15 Si 1.86793 * 120.00077 * 187.13481 * 13 11 10 16 16 H 1.48507 * 109.47076 * 270.00061 * 15 13 11 17 17 H 1.48500 * 109.47116 * 30.00288 * 15 13 11 18 18 H 1.48502 * 109.47312 * 150.00186 * 15 13 11 19 19 C 1.53009 * 117.49380 * 83.60601 * 10 9 8 20 20 C 1.53000 * 117.49581 * 152.26424 * 10 9 8 21 21 N 1.33276 * 118.96573 * 0.27958 * 5 4 3 22 22 C 1.31540 * 120.88543 * 359.43390 * 21 5 4 23 23 N 1.31889 * 121.98719 * 0.58284 * 22 21 5 24 24 H 1.09004 * 109.47064 * 300.00002 * 1 2 3 25 25 H 1.08995 * 109.47280 * 60.00079 * 1 2 3 26 26 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.89734 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99966 * 0.02562 * 8 6 5 29 29 H 1.08996 * 109.47106 * 64.66760 * 9 8 6 30 30 H 1.08998 * 109.46754 * 304.66975 * 9 8 6 31 31 H 0.97004 * 120.00131 * 355.39941 * 14 13 11 32 32 H 1.09000 * 117.49392 * 214.99864 * 19 10 9 33 33 H 1.08997 * 117.50296 * 0.02562 * 19 10 9 34 34 H 1.09003 * 117.49927 * 359.97438 * 20 10 9 35 35 H 1.08997 * 117.49643 * 144.97660 * 20 10 9 36 36 H 1.07998 * 119.00511 * 180.26706 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2926 -0.0005 5 6 4.0197 2.5566 0.0000 6 6 5.4966 2.7067 0.0001 7 8 6.2073 1.7215 -0.0009 8 7 6.0489 3.9360 0.0012 9 6 7.5065 4.0842 0.0006 10 6 7.8685 5.5660 0.1195 11 6 7.3929 6.4439 -1.0093 12 1 6.4619 6.9837 -0.9182 13 6 8.1464 6.5580 -2.1583 14 7 9.2049 5.7964 -2.3288 15 14 7.6638 7.7942 -3.4728 16 1 6.7383 7.1520 -4.4405 17 1 6.9887 8.9543 -2.8374 18 1 8.8806 8.2593 -4.1857 19 6 7.9005 6.1750 1.5228 20 6 9.2082 5.9159 0.7704 21 7 3.2303 3.6304 0.0068 22 6 1.9209 3.5058 0.0016 23 7 1.3313 2.3261 0.0011 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0480 0.4013 -0.0014 28 1 5.4814 4.7227 0.0023 29 1 7.9120 3.6846 -0.9288 30 1 7.9274 3.5385 0.8450 31 1 9.4944 5.2022 -1.6188 32 1 7.5777 7.2107 1.6294 33 1 7.6641 5.5200 2.3613 34 1 9.8315 5.0904 1.1143 35 1 9.7458 6.7808 0.3818 36 1 1.3101 4.3965 0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935782063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -23.929856 kcal Electronic energy + Delta-G solvation = -20820.955941 eV Core-core repulsion = 17498.759580 eV Total energy + Delta-G solvation = -3322.196361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50889 -40.75848 -39.50878 -38.75662 -35.33670 -34.41088 -33.92051 -32.99426 -29.06573 -28.22563 -26.96099 -25.47438 -25.37198 -23.12083 -22.03484 -21.58228 -19.97762 -19.40855 -18.61135 -17.41653 -17.40093 -17.06419 -16.64408 -16.53476 -16.04682 -15.79037 -15.60034 -15.33345 -15.10728 -14.75437 -14.58836 -14.28185 -13.64744 -12.99875 -12.84328 -12.72453 -12.63932 -12.21966 -12.02848 -11.91788 -11.74892 -11.55810 -11.44887 -10.69168 -10.57772 -10.43619 -10.37510 -10.31588 -10.04677 -8.51128 -6.26656 -0.73284 -0.15765 1.52981 1.57517 1.58323 1.64503 1.81356 2.06844 2.60284 2.65389 2.80105 2.93243 3.25003 3.29071 3.57384 3.73878 3.99477 4.05994 4.34581 4.39237 4.39657 4.43127 4.45019 4.51709 4.69709 4.77246 4.85101 4.98252 5.06750 5.28324 5.36100 5.46975 5.53905 5.91354 6.16160 6.27700 6.44048 6.72052 6.80172 7.00893 7.55909 8.88950 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022810 B = 0.004221 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.257506 B = 6632.389438 C = 7151.442286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.366 3.634 4 C -0.192 4.192 5 C 0.155 3.845 6 C 0.556 3.444 7 O -0.569 6.569 8 N -0.670 5.670 9 C 0.168 3.832 10 C -0.021 4.021 11 C -0.576 4.576 12 H 0.053 0.947 13 C -0.018 4.018 14 N -0.932 5.932 15 Si 1.110 2.890 16 H -0.282 1.282 17 H -0.268 1.268 18 H -0.289 1.289 19 C -0.164 4.164 20 C -0.174 4.174 21 N -0.529 5.529 22 C 0.340 3.660 23 N -0.561 5.561 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.163 0.837 28 H 0.419 0.581 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -6.357 6.013 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.209 6.209 3 C 0.177 3.823 4 C -0.217 4.217 5 C 0.011 3.989 6 C 0.340 3.660 7 O -0.448 6.448 8 N -0.318 5.318 9 C 0.045 3.955 10 C -0.022 4.022 11 C -0.614 4.614 12 H 0.071 0.929 13 C -0.219 4.219 14 N -0.568 5.568 15 Si 0.934 3.066 16 H -0.208 1.208 17 H -0.193 1.193 18 H -0.215 1.215 19 C -0.201 4.201 20 C -0.212 4.212 21 N -0.251 5.251 22 C 0.053 3.947 23 N -0.292 5.292 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.181 0.819 28 H 0.256 0.744 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -17.394 -6.007 4.522 18.949 hybrid contribution 0.122 -0.983 1.362 1.684 sum -17.272 -6.990 5.884 19.540 Atomic orbital electron populations 1.23313 0.74255 1.05597 1.03225 1.86270 1.25638 1.22811 1.86148 1.20044 0.88807 0.85975 0.87477 1.21891 0.93576 1.00000 1.06213 1.21128 0.93757 0.89679 0.94305 1.18131 0.86481 0.83732 0.77623 1.90739 1.62592 1.38998 1.52480 1.45708 1.08491 1.07841 1.69736 1.20843 0.79051 0.96856 0.98800 1.19311 0.98575 0.91119 0.93191 1.21485 1.08776 1.29266 1.01835 0.92890 1.26969 0.94205 0.99201 1.01494 1.70814 1.26790 1.23894 1.35254 0.83008 0.75626 0.74388 0.73625 1.20834 1.19300 1.21518 1.22915 1.01004 1.01386 0.94828 1.22707 0.91049 1.02086 1.05363 1.68421 1.07708 1.32583 1.16358 1.25552 0.87381 0.94916 0.86841 1.68176 1.41533 0.99226 1.20259 0.91375 0.91544 0.85261 0.81928 0.74388 0.94928 0.92877 0.92358 0.89497 0.89014 0.89878 0.91365 0.73711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.31 -6.32 10.49 -88.21 -0.93 -7.25 16 3 C 0.37 8.89 7.54 84.91 0.64 9.53 16 4 C -0.19 -5.45 9.68 22.83 0.22 -5.23 16 5 C 0.16 4.98 6.79 41.87 0.28 5.27 16 6 C 0.56 21.81 7.83 86.97 0.68 22.49 16 7 O -0.57 -25.17 16.42 -3.65 -0.06 -25.23 16 8 N -0.67 -27.19 5.45 -465.39 -2.54 -29.72 16 9 C 0.17 7.62 5.43 86.38 0.47 8.09 16 10 C -0.02 -0.98 0.99 -52.93 -0.05 -1.03 16 11 C -0.58 -29.79 8.44 25.60 0.22 -29.58 16 12 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 13 C -0.02 -0.98 5.39 84.66 0.46 -0.52 16 14 N -0.93 -54.43 13.57 21.45 0.29 -54.14 16 15 Si 1.11 48.66 29.91 68.60 2.05 50.72 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 C -0.16 -6.47 9.96 30.62 0.30 -6.17 16 20 C -0.17 -7.60 8.74 30.62 0.27 -7.33 16 21 N -0.53 -14.96 9.70 -189.36 -1.84 -16.79 16 22 C 0.34 7.22 12.27 180.93 2.22 9.44 16 23 N -0.56 -12.28 9.36 -312.99 -2.93 -15.22 16 24 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 25 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 26 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.16 4.57 7.73 -2.91 -0.02 4.54 16 28 H 0.42 16.38 7.61 -92.71 -0.71 15.68 16 29 H 0.03 1.69 7.82 -2.39 -0.02 1.67 16 30 H 0.05 2.29 8.11 -2.39 -0.02 2.27 16 31 H 0.27 15.57 6.19 -92.71 -0.57 15.00 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.25 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -65.92 319.94 1.54 -64.38 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.60 Total: 26.75 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.89 Total: 6.51 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -7.01 Total: -115.88 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.99 Total: -32.48 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.05 Total: 50.72 kcal Total: -65.92 1.54 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.453 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds