Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35473 * 116.99902 * 2 1 4 4 N 1.32422 * 119.11456 * 0.02562 * 3 2 1 5 5 C 1.32139 * 120.97579 * 179.75209 * 4 3 2 6 6 C 1.38797 * 119.22064 * 0.48148 * 5 4 3 7 7 C 1.39465 * 118.38549 * 359.51329 * 6 5 4 8 8 C 1.48460 * 120.51602 * 180.27477 * 7 6 5 9 9 O 1.21483 * 119.99680 * 354.36465 * 8 7 6 10 10 N 1.34779 * 120.00116 * 174.36461 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.58887 * 10 8 7 12 12 C 1.53006 * 109.47019 * 185.19890 * 11 10 8 13 13 C 1.50693 * 115.54932 * 57.83630 * 12 11 10 14 14 H 1.08001 * 120.00573 * 264.64892 * 13 12 11 15 15 C 1.37879 * 119.99908 * 84.65450 * 13 12 11 16 16 N 1.31508 * 120.00183 * 1.95882 * 15 13 12 17 17 Si 1.86799 * 119.99884 * 181.96687 * 15 13 12 18 18 H 1.48499 * 109.47609 * 89.99790 * 17 15 13 19 19 H 1.48504 * 109.47301 * 209.99654 * 17 15 13 20 20 H 1.48507 * 109.47248 * 329.99572 * 17 15 13 21 21 C 1.52997 * 117.49545 * 272.16788 * 12 11 10 22 22 C 1.53002 * 117.49783 * 203.50846 * 12 11 10 23 23 N 1.32083 * 119.11509 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47153 * 60.00381 * 1 2 3 25 25 H 1.08997 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46797 * 300.00051 * 1 2 3 27 27 H 1.07997 * 120.38856 * 180.24514 * 5 4 3 28 28 H 1.07996 * 120.81091 * 179.78710 * 6 5 4 29 29 H 0.96997 * 120.00078 * 5.59426 * 10 8 7 30 30 H 1.08999 * 109.47296 * 305.19405 * 11 10 8 31 31 H 1.09001 * 109.47377 * 65.19569 * 11 10 8 32 32 H 0.97005 * 120.00474 * 185.01903 * 16 15 13 33 33 H 1.08996 * 117.50102 * 0.02562 * 21 12 11 34 34 H 1.09004 * 117.49574 * 145.02168 * 21 12 11 35 35 H 1.08994 * 117.49675 * 214.97837 * 22 12 11 36 36 H 1.08995 * 117.49839 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0054 6 6 3.2514 3.6015 -0.0001 7 6 4.0002 2.4248 -0.0002 8 6 5.4839 2.4755 0.0001 9 8 6.0552 3.5426 -0.1027 10 7 6.1970 1.3375 0.1146 11 6 7.6556 1.3965 0.2382 12 6 8.2266 -0.0230 0.2221 13 6 7.8953 -0.8429 -0.9981 14 1 7.0525 -1.5180 -0.9827 15 6 8.6684 -0.7313 -2.1344 16 7 9.7175 0.0617 -2.1407 17 14 8.2254 -1.7063 -3.6649 18 1 7.3054 -0.9062 -4.5126 19 1 9.4603 -2.0152 -4.4297 20 1 7.5583 -2.9728 -3.2692 21 6 8.3307 -0.7577 1.5600 22 6 9.5955 -0.2412 0.8696 23 7 3.3639 1.2559 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2557 4.3929 0.0098 28 1 3.7371 4.5660 0.0003 29 1 5.7445 0.4796 0.1151 30 1 8.0683 1.9636 -0.5961 31 1 7.9214 1.8844 1.1760 32 1 10.2187 0.1966 -2.9602 33 1 7.9921 -0.2301 2.4516 34 1 8.1601 -1.8343 1.5576 35 1 10.2564 -0.9780 0.4132 36 1 10.0895 0.6265 1.3067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 10.719358 kcal Electronic energy + Delta-G solvation = -20978.207405 eV Core-core repulsion = 17657.513546 eV Total energy + Delta-G solvation = -3320.693859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39892 -39.22288 -38.14812 -36.68242 -34.17412 -33.21804 -31.94600 -31.55115 -27.80851 -26.91924 -25.51715 -24.68176 -23.62465 -21.20520 -20.55555 -19.50400 -18.55227 -18.12592 -16.89314 -16.56058 -16.08427 -15.47317 -15.08251 -14.91597 -14.63487 -14.58120 -14.22051 -13.89296 -13.74160 -13.01683 -12.69217 -12.21505 -11.96354 -11.58270 -11.52906 -11.30260 -10.98402 -10.91330 -10.87445 -10.51326 -10.26533 -10.08688 -9.57149 -9.25295 -9.18188 -9.04392 -8.47771 -8.36329 -8.07667 -6.06304 -4.14745 0.49752 0.88950 2.37768 3.00868 3.29315 3.36419 3.39107 3.46406 3.82651 3.85294 4.38748 4.44522 4.68909 4.89431 5.03296 5.06423 5.13224 5.22800 5.34145 5.36830 5.61497 5.89795 6.01797 6.31064 6.44640 6.47021 6.51372 6.71079 6.80745 6.95494 7.10835 7.15832 7.37937 7.51534 7.82950 7.84353 8.18292 8.34703 8.65514 8.87310 9.52831 11.01890 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.005054 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.871535 B = 5538.365884 C = 6135.232309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.286 6.286 3 C 0.497 3.503 4 N -0.561 5.561 5 C 0.185 3.815 6 C -0.215 4.215 7 C 0.184 3.816 8 C 0.556 3.444 9 O -0.538 6.538 10 N -0.669 5.669 11 C 0.158 3.842 12 C 0.022 3.978 13 C -0.497 4.497 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.211 4.211 22 C -0.142 4.142 23 N -0.497 5.497 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.179 0.821 28 H 0.164 0.836 29 H 0.415 0.585 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 4.414 5.040 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.187 6.187 3 C 0.194 3.806 4 N -0.291 5.291 5 C 0.018 3.982 6 C -0.238 4.238 7 C 0.036 3.964 8 C 0.337 3.663 9 O -0.415 6.415 10 N -0.316 5.316 11 C 0.036 3.964 12 C 0.022 3.978 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.248 4.248 22 C -0.180 4.180 23 N -0.225 5.225 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.196 0.804 28 H 0.181 0.819 29 H 0.251 0.749 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.674 3.913 4.882 16.876 hybrid contribution -0.258 0.016 -0.980 1.013 sum -15.932 3.930 3.902 16.867 Atomic orbital electron populations 1.22993 0.75772 1.03595 1.02697 1.86145 1.23227 1.22355 1.87013 1.20577 0.85795 0.84860 0.89356 1.67976 1.41648 0.99422 1.20102 1.23022 0.92243 0.94369 0.88535 1.22801 0.95449 1.01230 1.04367 1.21803 0.95703 0.87706 0.91221 1.17708 0.84170 0.85270 0.79127 1.90768 1.69929 1.29612 1.51236 1.45906 1.09021 1.08459 1.68243 1.21141 0.76850 0.98728 0.99725 1.19030 0.96675 0.91060 0.91063 1.20366 1.13224 1.23871 0.95992 0.92035 1.24963 0.94074 0.95270 0.98654 1.69985 1.17041 1.36970 1.27195 0.86648 0.77854 0.80627 0.83274 1.20669 1.21222 1.19735 1.23055 1.05402 0.99706 0.96625 1.22471 0.91202 1.01426 1.02914 1.67536 1.08042 1.29468 1.17431 0.91925 0.87830 0.91948 0.80393 0.81855 0.74875 0.90450 0.94029 0.92903 0.91640 0.90258 0.89522 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.40 10.36 101.05 1.05 1.45 16 2 O -0.29 -3.99 10.56 -18.11 -0.19 -4.18 16 3 C 0.50 7.48 8.48 -91.36 -0.77 6.71 16 4 N -0.56 -7.08 9.20 -14.74 -0.14 -7.22 16 5 C 0.18 1.93 11.30 -17.21 -0.19 1.73 16 6 C -0.21 -2.74 9.71 -38.92 -0.38 -3.11 16 7 C 0.18 3.04 6.79 -82.65 -0.56 2.48 16 8 C 0.56 10.85 7.82 -12.05 -0.09 10.75 16 9 O -0.54 -11.54 16.41 5.38 0.09 -11.46 16 10 N -0.67 -13.79 5.37 -61.05 -0.33 -14.12 16 11 C 0.16 3.57 5.57 -4.04 -0.02 3.55 16 12 C 0.02 0.53 1.51 -155.66 -0.23 0.30 16 13 C -0.50 -13.03 8.38 -34.44 -0.29 -13.32 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.07 2.00 5.43 -17.82 -0.10 1.90 16 16 N -0.88 -24.41 12.72 55.43 0.71 -23.71 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.21 -4.43 9.94 -26.69 -0.27 -4.69 16 22 C -0.14 -3.24 9.26 -26.69 -0.25 -3.49 16 23 N -0.50 -8.45 9.74 -11.29 -0.11 -8.56 16 24 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.16 1.83 7.74 -52.49 -0.41 1.42 16 29 H 0.41 8.47 7.64 -40.82 -0.31 8.15 16 30 H 0.08 1.97 8.09 -51.93 -0.42 1.55 16 31 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -30.77 322.06 -6.73 -37.51 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.48 Total: 6.55 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.11 Total: 4.26 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.13 Total: -53.61 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.10 Total: -15.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.77 -6.73 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.225 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds