Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35473 * 116.99902 * 2 1 4 4 N 1.32422 * 119.11456 * 0.02562 * 3 2 1 5 5 C 1.32139 * 120.97579 * 179.75209 * 4 3 2 6 6 C 1.38797 * 119.22064 * 0.48148 * 5 4 3 7 7 C 1.39465 * 118.38549 * 359.51329 * 6 5 4 8 8 C 1.48460 * 120.51602 * 180.27477 * 7 6 5 9 9 O 1.21483 * 119.99680 * 354.36465 * 8 7 6 10 10 N 1.34779 * 120.00116 * 174.36461 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.58887 * 10 8 7 12 12 C 1.53006 * 109.47019 * 185.19890 * 11 10 8 13 13 C 1.50693 * 115.54932 * 57.83630 * 12 11 10 14 14 H 1.08001 * 120.00573 * 264.64892 * 13 12 11 15 15 C 1.37879 * 119.99908 * 84.65450 * 13 12 11 16 16 N 1.31508 * 120.00183 * 1.95882 * 15 13 12 17 17 Si 1.86799 * 119.99884 * 181.96687 * 15 13 12 18 18 H 1.48499 * 109.47609 * 89.99790 * 17 15 13 19 19 H 1.48504 * 109.47301 * 209.99654 * 17 15 13 20 20 H 1.48507 * 109.47248 * 329.99572 * 17 15 13 21 21 C 1.52997 * 117.49545 * 272.16788 * 12 11 10 22 22 C 1.53002 * 117.49783 * 203.50846 * 12 11 10 23 23 N 1.32083 * 119.11509 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47153 * 60.00381 * 1 2 3 25 25 H 1.08997 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46797 * 300.00051 * 1 2 3 27 27 H 1.07997 * 120.38856 * 180.24514 * 5 4 3 28 28 H 1.07996 * 120.81091 * 179.78710 * 6 5 4 29 29 H 0.96997 * 120.00078 * 5.59426 * 10 8 7 30 30 H 1.08999 * 109.47296 * 305.19405 * 11 10 8 31 31 H 1.09001 * 109.47377 * 65.19569 * 11 10 8 32 32 H 0.97005 * 120.00474 * 185.01903 * 16 15 13 33 33 H 1.08996 * 117.50102 * 0.02562 * 21 12 11 34 34 H 1.09004 * 117.49574 * 145.02168 * 21 12 11 35 35 H 1.08994 * 117.49675 * 214.97837 * 22 12 11 36 36 H 1.08995 * 117.49839 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0054 6 6 3.2514 3.6015 -0.0001 7 6 4.0002 2.4248 -0.0002 8 6 5.4839 2.4755 0.0001 9 8 6.0552 3.5426 -0.1027 10 7 6.1970 1.3375 0.1146 11 6 7.6556 1.3965 0.2382 12 6 8.2266 -0.0230 0.2221 13 6 7.8953 -0.8429 -0.9981 14 1 7.0525 -1.5180 -0.9827 15 6 8.6684 -0.7313 -2.1344 16 7 9.7175 0.0617 -2.1407 17 14 8.2254 -1.7063 -3.6649 18 1 7.3054 -0.9062 -4.5126 19 1 9.4603 -2.0152 -4.4297 20 1 7.5583 -2.9728 -3.2692 21 6 8.3307 -0.7577 1.5600 22 6 9.5955 -0.2412 0.8696 23 7 3.3639 1.2559 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2557 4.3929 0.0098 28 1 3.7371 4.5660 0.0003 29 1 5.7445 0.4796 0.1151 30 1 8.0683 1.9636 -0.5961 31 1 7.9214 1.8844 1.1760 32 1 10.2187 0.1966 -2.9602 33 1 7.9921 -0.2301 2.4516 34 1 8.1601 -1.8343 1.5576 35 1 10.2564 -0.9780 0.4132 36 1 10.0895 0.6265 1.3067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935782072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -12.870036 kcal Electronic energy + Delta-G solvation = -20979.230318 eV Core-core repulsion = 17657.513546 eV Total energy + Delta-G solvation = -3321.716772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47147 -40.66351 -39.24328 -38.45508 -35.44678 -34.70454 -33.97220 -32.59870 -28.85629 -28.27382 -27.41613 -25.96465 -24.73152 -22.95530 -21.94428 -21.31987 -19.85342 -19.25051 -18.32838 -17.71620 -17.55003 -16.75641 -16.65714 -16.48594 -16.30160 -15.69107 -15.56659 -15.12134 -14.90210 -14.63046 -14.35519 -13.78634 -13.48704 -12.94756 -12.92288 -12.85952 -12.39228 -12.37225 -12.32567 -12.04406 -12.01413 -11.65510 -11.36597 -10.97794 -10.47920 -10.39986 -10.22488 -10.11465 -9.85354 -8.12067 -6.24251 -0.65086 -0.08055 1.38659 1.40970 1.41308 1.49389 1.64454 2.05905 2.41065 2.68598 2.88545 3.16379 3.31521 3.48811 3.63678 3.85257 4.18875 4.23342 4.40253 4.42094 4.51684 4.60308 4.65836 4.68188 4.72273 4.96518 4.99316 5.02490 5.28466 5.39350 5.49898 5.57999 5.68547 5.76148 6.01961 6.35607 6.51906 6.82104 6.84855 7.08450 7.45095 8.95708 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.005054 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.871535 B = 5538.365884 C = 6135.232309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.486 3.514 4 N -0.552 5.552 5 C 0.206 3.794 6 C -0.204 4.204 7 C 0.156 3.844 8 C 0.556 3.444 9 O -0.563 6.563 10 N -0.674 5.674 11 C 0.173 3.827 12 C -0.004 4.004 13 C -0.502 4.502 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.904 5.904 17 Si 0.943 3.057 18 H -0.284 1.284 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.181 4.181 22 C -0.147 4.147 23 N -0.531 5.531 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.070 0.930 27 H 0.236 0.764 28 H 0.180 0.820 29 H 0.415 0.585 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 4.973 5.588 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.183 3.817 4 N -0.282 5.282 5 C 0.039 3.961 6 C -0.227 4.227 7 C 0.010 3.990 8 C 0.340 3.660 9 O -0.443 6.443 10 N -0.322 5.322 11 C 0.050 3.950 12 C -0.004 4.004 13 C -0.540 4.540 14 H 0.074 0.926 15 C -0.172 4.172 16 N -0.541 5.541 17 Si 0.769 3.231 18 H -0.210 1.210 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.218 4.218 22 C -0.185 4.185 23 N -0.260 5.260 24 H 0.086 0.914 25 H 0.146 0.854 26 H 0.089 0.911 27 H 0.252 0.748 28 H 0.197 0.803 29 H 0.251 0.749 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.236 4.446 5.438 19.542 hybrid contribution 0.404 -0.122 -1.119 1.196 sum -17.832 4.324 4.319 18.850 Atomic orbital electron populations 1.23312 0.73363 1.05515 1.03314 1.86122 1.25654 1.22358 1.86882 1.20728 0.85426 0.85879 0.89674 1.68141 1.41029 0.99543 1.19487 1.23942 0.91651 0.95232 0.85290 1.23077 0.96418 1.00416 1.02801 1.21364 0.93882 0.89256 0.94472 1.18161 0.85785 0.84355 0.77709 1.90736 1.71121 1.30225 1.52176 1.45840 1.08210 1.09039 1.69084 1.20778 0.78062 0.97550 0.98651 1.19088 0.97757 0.91746 0.91846 1.20613 1.12633 1.23655 0.97111 0.92599 1.25607 0.94216 0.96223 1.01162 1.70085 1.17992 1.38448 1.27609 0.85792 0.77460 0.79551 0.80295 1.20991 1.21001 1.19051 1.23043 1.02942 0.99823 0.95992 1.22391 0.91123 1.01558 1.03459 1.67326 1.09541 1.30143 1.18986 0.91404 0.85392 0.91094 0.74833 0.80291 0.74859 0.94230 0.92851 0.93153 0.89048 0.89997 0.91727 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.36 113.37 1.17 1.79 16 2 O -0.31 -8.25 10.56 -87.72 -0.93 -9.18 16 3 C 0.49 13.99 8.48 180.61 1.53 15.52 16 4 N -0.55 -12.30 9.20 -313.45 -2.88 -15.18 16 5 C 0.21 3.47 11.30 84.78 0.96 4.43 16 6 C -0.20 -4.69 9.71 22.70 0.22 -4.47 16 7 C 0.16 5.08 6.79 41.98 0.28 5.36 16 8 C 0.56 21.99 7.82 86.97 0.68 22.67 16 9 O -0.56 -24.48 16.41 -3.66 -0.06 -24.54 16 10 N -0.67 -28.36 5.37 -465.36 -2.50 -30.85 16 11 C 0.17 7.98 5.57 86.38 0.48 8.46 16 12 C 0.00 -0.18 1.51 -52.93 -0.08 -0.26 16 13 C -0.50 -26.72 8.38 25.60 0.21 -26.51 16 14 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 15 C 0.03 1.57 5.43 84.66 0.46 2.03 16 16 N -0.90 -51.61 12.72 21.45 0.27 -51.33 16 17 Si 0.94 43.88 29.54 68.60 2.03 45.90 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.18 -7.42 9.94 30.62 0.30 -7.11 16 22 C -0.15 -6.74 9.26 30.62 0.28 -6.45 16 23 N -0.53 -17.89 9.74 -302.69 -2.95 -20.84 16 24 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 25 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 27 H 0.24 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.18 3.52 7.74 -2.91 -0.02 3.50 16 29 H 0.41 17.32 7.64 -92.71 -0.71 16.61 16 30 H 0.04 2.10 8.09 -2.39 -0.02 2.08 16 31 H 0.05 2.29 8.11 -2.39 -0.02 2.27 16 32 H 0.26 14.29 8.32 -92.70 -0.77 13.51 16 33 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 35 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -68.25 322.06 -0.11 -68.36 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.40 Total: 22.21 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.51 Total: 15.46 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -8.06 Total: -118.21 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.99 Total: -33.72 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.25 -0.11 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.490 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds