Wall clock time and date at job start Mon Mar 30 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35682 * 116.99801 * 2 1 4 4 C 1.38895 * 119.61884 * 179.97438 * 3 2 1 5 5 C 1.39576 * 118.94713 * 179.97438 * 4 3 2 6 6 C 1.48154 * 120.89401 * 180.02562 * 5 4 3 7 7 O 1.21515 * 120.00390 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99949 * 179.72563 * 8 6 5 10 10 C 1.53948 * 113.73648 * 254.01188 * 9 8 6 11 11 N 1.47822 * 86.03399 * 222.08560 * 10 9 8 12 12 C 1.36929 * 134.45447 * 204.64705 * 11 10 9 13 13 H 1.07996 * 120.00235 * 173.34452 * 12 11 10 14 14 C 1.38820 * 120.00370 * 353.35088 * 12 11 10 15 15 N 1.31618 * 119.99561 * 5.06060 * 14 12 11 16 16 Si 1.86792 * 120.00154 * 185.06582 * 14 12 11 17 17 H 1.48497 * 109.47499 * 94.98457 * 16 14 12 18 18 H 1.48503 * 109.46986 * 214.98563 * 16 14 12 19 19 H 1.48500 * 109.47427 * 334.98353 * 16 14 12 20 20 C 1.47579 * 91.04779 * 24.55339 * 11 10 9 21 21 C 1.39968 * 118.21416 * 0.27016 * 5 4 3 22 22 C 1.37980 * 119.13373 * 359.48183 * 21 5 4 23 23 N 1.31915 * 120.97686 * 0.53327 * 22 21 5 24 24 H 1.08998 * 109.47334 * 300.00065 * 1 2 3 25 25 H 1.09001 * 109.46625 * 60.00774 * 1 2 3 26 26 H 1.09003 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.53153 * 359.97438 * 4 3 2 28 28 H 0.97002 * 119.99780 * 359.97438 * 8 6 5 29 29 H 1.08999 * 112.94257 * 25.60734 * 9 8 6 30 30 H 1.08996 * 113.77438 * 336.35175 * 10 9 8 31 31 H 1.09004 * 113.76685 * 107.75049 * 10 9 8 32 32 H 0.97002 * 120.00188 * 180.02562 * 15 14 12 33 33 H 1.09008 * 113.76303 * 221.15389 * 20 11 10 34 34 H 1.08995 * 113.77173 * 89.75935 * 20 11 10 35 35 H 1.07994 * 120.43465 * 179.72706 * 21 5 4 36 36 H 1.07999 * 119.51304 * 180.27256 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6414 0.0000 7 8 6.2178 1.6409 0.0009 8 7 6.1071 3.8586 -0.0001 9 6 7.5675 3.9753 0.0060 10 6 8.1484 4.4144 1.3623 11 7 9.0455 5.2897 0.5787 12 6 10.2759 5.8478 0.8016 13 1 10.7794 6.3797 0.0080 14 6 10.8762 5.7298 2.0477 15 7 10.3102 4.9983 2.9841 16 14 12.4870 6.6093 2.3955 17 1 12.2079 7.9144 3.0467 18 1 13.3219 5.7750 3.2967 19 1 13.2118 6.8377 1.1198 20 6 8.0841 5.3185 -0.5406 21 6 3.2395 3.6635 0.0047 22 6 1.8681 3.5116 -0.0012 23 7 1.3178 2.3126 -0.0006 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 4.0231 0.3683 0.0014 28 1 5.5567 4.6574 -0.0004 29 1 8.0649 3.1059 -0.4239 30 1 7.4408 4.9580 1.9882 31 1 8.6665 3.6180 1.8968 32 1 10.7294 4.9161 3.8550 33 1 8.5510 5.2427 -1.5227 34 1 7.3576 6.1283 -0.4750 35 1 3.6806 4.6493 0.0089 36 1 1.2358 4.3871 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030594397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:43 Heat of formation + Delta-G solvation = 1.633303 kcal Electronic energy + Delta-G solvation = -20451.373920 eV Core-core repulsion = 17130.286060 eV Total energy + Delta-G solvation = -3321.087860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92721 -40.84472 -39.35430 -38.62747 -35.32423 -34.09501 -33.36213 -31.74231 -29.47765 -28.26060 -26.63861 -26.17787 -24.42569 -24.34882 -21.87115 -21.43427 -19.66257 -18.77796 -18.39527 -17.59024 -17.14371 -17.06619 -16.95193 -16.65578 -16.03069 -15.71447 -15.53728 -15.13866 -14.87987 -14.64511 -14.30789 -13.69186 -13.38614 -13.24030 -13.14995 -12.83199 -12.69209 -12.63028 -12.32929 -12.19190 -11.96224 -11.54164 -11.40161 -11.07230 -10.89232 -10.73397 -10.05473 -9.60136 -8.97031 -7.93926 -5.28244 -0.41629 0.08341 1.46329 1.48211 1.57512 1.74982 1.79303 2.21899 2.49294 2.75694 3.22302 3.27780 3.37131 3.53025 3.81080 3.89771 3.95889 4.08444 4.30581 4.44922 4.46379 4.49877 4.64012 4.73398 4.76080 4.78756 4.90992 4.99619 5.08415 5.21708 5.27753 5.47989 5.64277 5.87985 6.16446 6.45762 6.71304 6.87300 7.09861 7.57478 8.50328 9.23589 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.047941 B = 0.003049 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.905570 B = 9179.816979 C = 9329.548932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.323 6.323 3 C 0.308 3.692 4 C -0.154 4.154 5 C -0.058 4.058 6 C 0.555 3.445 7 O -0.574 6.574 8 N -0.687 5.687 9 C 0.118 3.882 10 C 0.154 3.846 11 N -0.639 5.639 12 C -0.234 4.234 13 H 0.092 0.908 14 C -0.069 4.069 15 N -0.954 5.954 16 Si 0.981 3.019 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.264 1.264 20 C 0.124 3.876 21 C -0.167 4.167 22 C 0.145 3.855 23 N -0.533 5.533 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.138 0.862 28 H 0.418 0.582 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.041 -2.055 -8.044 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.230 6.230 3 C 0.130 3.870 4 C -0.176 4.176 5 C -0.069 4.069 6 C 0.342 3.658 7 O -0.454 6.454 8 N -0.339 5.339 9 C 0.011 3.989 10 C 0.028 3.972 11 N -0.366 5.366 12 C -0.363 4.363 13 H 0.109 0.891 14 C -0.262 4.262 15 N -0.602 5.602 16 Si 0.809 3.191 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.188 1.188 20 C -0.001 4.001 21 C -0.187 4.187 22 C -0.011 4.011 23 N -0.258 5.258 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.139 0.861 27 H 0.156 0.844 28 H 0.257 0.743 29 H 0.113 0.887 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.194 0.806 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -22.049 -3.027 -7.902 23.617 hybrid contribution 1.558 0.583 0.741 1.822 sum -20.491 -2.444 -7.161 21.843 Atomic orbital electron populations 1.23116 0.75280 1.04792 1.02642 1.86246 1.24846 1.24200 1.87702 1.19679 0.88720 0.85500 0.93140 1.21105 0.92521 0.99120 1.04830 1.20035 0.92365 0.94463 0.99993 1.18526 0.87709 0.83575 0.75967 1.90778 1.65440 1.37983 1.51164 1.45723 1.07332 1.08000 1.72857 1.23319 0.78712 0.98949 0.97872 1.22558 0.89823 0.91896 0.92973 1.46017 1.15551 1.57881 1.17194 1.19424 0.92565 1.27830 0.96439 0.89063 1.25741 1.03026 1.01476 0.95972 1.70045 1.41808 1.43656 1.04719 0.85015 0.78624 0.77495 0.77939 1.21191 1.22482 1.18817 1.23025 0.90921 0.93546 0.92592 1.22545 0.94993 0.99294 1.01872 1.23113 0.92819 0.94074 0.91055 1.67293 1.41262 0.99343 1.17885 0.92099 0.91897 0.86150 0.84419 0.74316 0.88727 0.95173 0.95355 0.94259 0.91472 0.91070 0.80633 0.77382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.69 16 2 O -0.32 -7.21 10.47 -90.00 -0.94 -8.15 16 3 C 0.31 7.27 7.49 84.80 0.63 7.91 16 4 C -0.15 -4.05 9.61 22.75 0.22 -3.83 16 5 C -0.06 -1.42 5.91 -19.90 -0.12 -1.53 16 6 C 0.56 17.39 7.80 86.88 0.68 18.07 16 7 O -0.57 -23.44 16.07 -3.76 -0.06 -23.50 16 8 N -0.69 -19.33 5.33 -449.95 -2.40 -21.72 16 9 C 0.12 4.38 4.40 46.75 0.21 4.58 16 10 C 0.15 7.39 7.24 86.44 0.63 8.02 16 11 N -0.64 -32.07 3.70 -716.63 -2.65 -34.72 16 12 C -0.23 -12.96 10.70 84.04 0.90 -12.06 16 13 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 14 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 15 N -0.95 -58.44 11.51 21.65 0.25 -58.19 16 16 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.12 4.50 8.69 86.49 0.75 5.25 16 21 C -0.17 -2.64 9.61 22.63 0.22 -2.42 16 22 C 0.14 2.05 11.17 84.62 0.94 2.99 16 23 N -0.53 -10.55 9.18 -309.14 -2.84 -13.39 16 24 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 25 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 26 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.14 3.97 7.74 -2.91 -0.02 3.94 16 28 H 0.42 8.23 6.85 -92.71 -0.64 7.60 16 29 H 0.09 3.94 7.51 -2.39 -0.02 3.92 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.03 1.60 7.37 -2.38 -0.02 1.58 16 32 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 35 H 0.18 1.56 6.53 -2.91 -0.02 1.55 16 36 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -76.88 314.56 0.56 -76.32 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.48 Total: 10.57 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 6.70 Total: 25.20 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -7.64 Total: -128.02 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.00 Total: -31.65 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.88 0.56 -76.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030594397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.954 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds