Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34591 * 119.47706 * 2 1 4 4 C 1.38000 * 120.45783 * 179.97438 * 3 2 1 5 5 C 1.47457 * 120.25448 * 180.27958 * 4 3 2 6 6 O 1.21607 * 120.00642 * 359.72120 * 5 4 3 7 7 N 1.34785 * 119.99709 * 179.72538 * 5 4 3 8 8 C 1.46504 * 119.99734 * 179.97438 * 7 5 4 9 9 C 1.53941 * 113.74305 * 253.73925 * 8 7 5 10 10 N 1.47811 * 86.03880 * 222.09027 * 9 8 7 11 11 C 1.36938 * 134.45546 * 204.65101 * 10 9 8 12 12 H 1.08006 * 119.99539 * 179.86296 * 11 10 9 13 13 C 1.38805 * 120.00243 * 359.85825 * 11 10 9 14 14 N 1.31619 * 119.99933 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47183 * 59.99960 * 15 13 11 17 17 H 1.48504 * 109.47290 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46984 * 299.99776 * 15 13 11 19 19 C 1.47584 * 91.04860 * 24.54792 * 10 9 8 20 20 C 1.41595 * 119.48457 * 0.02562 * 4 3 2 21 21 C 1.35974 * 119.01163 * 359.97438 * 20 4 3 22 22 C 1.34536 * 119.47884 * 179.97438 * 2 1 3 23 23 O 1.21964 * 119.74633 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47189 * 300.01879 * 1 2 3 26 26 H 1.09005 * 109.47069 * 60.02121 * 1 2 3 27 27 H 1.08005 * 119.77379 * 0.02562 * 3 2 1 28 28 H 0.96995 * 119.99966 * 359.97438 * 7 5 4 29 29 H 1.08999 * 112.94287 * 25.33282 * 8 7 5 30 30 H 1.09005 * 113.76844 * 336.35498 * 9 8 7 31 31 H 1.08998 * 113.76765 * 107.74928 * 9 8 7 32 32 H 0.96996 * 120.00232 * 179.97438 * 14 13 11 33 33 H 1.09003 * 113.76477 * 221.15237 * 19 10 9 34 34 H 1.09003 * 113.76705 * 89.76012 * 19 10 9 35 35 H 1.08001 * 120.49060 * 180.02562 * 20 4 3 36 36 H 1.07999 * 120.25131 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 0.0005 5 6 4.2281 2.4816 0.0067 6 8 3.6069 3.5270 0.0063 7 7 5.5759 2.4986 0.0128 8 6 6.2923 3.7765 0.0184 9 6 6.9456 4.1267 -1.3307 10 7 8.1090 4.5722 -0.5352 11 6 9.1322 5.4577 -0.7455 12 1 9.8801 5.6100 0.0187 13 6 9.2082 6.1594 -1.9407 14 7 8.2966 5.9740 -2.8718 15 14 10.6044 7.3667 -2.2278 16 1 11.9026 6.6500 -2.1493 17 1 10.4585 7.9819 -3.5715 18 1 10.5617 8.4286 -1.1905 19 6 7.7236 3.6820 0.5770 20 6 4.2250 -0.0251 0.0005 21 6 3.5344 -1.1965 0.0005 22 6 2.1271 -1.1712 0.0005 23 8 1.5030 -2.2191 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.5751 2.0999 0.0004 28 1 6.0714 1.6647 0.0135 29 1 5.7067 4.5899 0.4468 30 1 7.1490 3.2593 -1.9587 31 1 6.4433 4.9325 -1.8660 32 1 8.3495 6.4646 -3.7069 33 1 7.8416 4.1335 1.5621 34 1 8.1562 2.6837 0.5107 35 1 5.3050 -0.0256 0.0014 36 1 4.0617 -2.1390 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030603143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = 27.743777 kcal Electronic energy + Delta-G solvation = -20628.361754 eV Core-core repulsion = 17308.406130 eV Total energy + Delta-G solvation = -3319.955625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73144 -39.57662 -37.71422 -36.90173 -35.04551 -33.48909 -31.83294 -30.28627 -28.27395 -27.36303 -24.87972 -24.77616 -23.41834 -22.90452 -20.67618 -19.75562 -18.18622 -17.59991 -16.88975 -16.80162 -16.43912 -15.88241 -15.72242 -15.00438 -14.52621 -14.46891 -14.09156 -13.85141 -13.65849 -13.34800 -12.91342 -12.73853 -12.29529 -11.96431 -11.87430 -11.48495 -11.46355 -10.91048 -10.80544 -10.51226 -10.46405 -10.31548 -10.10451 -9.75569 -9.56678 -8.83726 -8.58032 -8.22837 -6.95661 -5.80243 -3.14490 0.50393 1.14372 2.20807 2.94757 3.35865 3.39795 3.43627 3.45042 3.59897 4.28368 4.36520 4.44959 4.54212 4.73517 4.79594 4.81565 4.99186 5.12743 5.24062 5.44494 5.52647 5.64541 5.67555 5.82996 5.97932 6.07699 6.17398 6.36190 6.51023 6.63622 6.68705 7.19863 7.31109 7.51950 7.63265 7.78593 7.93290 8.42844 8.99654 9.66126 10.51939 11.36349 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045409 B = 0.003175 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.468817 B = 8816.393658 C = 9012.466342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.492 5.492 3 C 0.204 3.796 4 C -0.245 4.245 5 C 0.573 3.427 6 O -0.548 6.548 7 N -0.709 5.709 8 C 0.093 3.907 9 C 0.154 3.846 10 N -0.607 5.607 11 C -0.227 4.227 12 H 0.081 0.919 13 C -0.005 4.005 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.112 3.888 20 C 0.006 3.994 21 C -0.246 4.246 22 C 0.514 3.486 23 O -0.549 6.549 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.180 0.820 28 H 0.395 0.605 29 H 0.113 0.887 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.140 0.860 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 -12.156 6.519 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.200 5.200 3 C 0.072 3.928 4 C -0.254 4.254 5 C 0.359 3.641 6 O -0.427 6.427 7 N -0.359 5.359 8 C -0.012 4.012 9 C 0.027 3.973 10 N -0.333 5.333 11 C -0.355 4.355 12 H 0.099 0.901 13 C -0.202 4.202 14 N -0.565 5.565 15 Si 0.745 3.255 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.015 4.015 20 C -0.015 4.015 21 C -0.268 4.268 22 C 0.317 3.683 23 O -0.431 6.431 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.197 0.803 28 H 0.230 0.770 29 H 0.130 0.870 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.158 0.842 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.528 -11.850 6.325 19.064 hybrid contribution 1.204 0.204 -0.338 1.267 sum -12.324 -11.646 5.987 17.982 Atomic orbital electron populations 1.22336 0.76567 1.06592 1.03860 1.45170 1.09900 1.06859 1.58112 1.22287 0.93085 0.89921 0.87532 1.19593 0.92492 0.94777 1.18512 1.17599 0.82574 0.87483 0.76426 1.90792 1.67397 1.33343 1.51151 1.46004 1.05568 1.10369 1.73959 1.23960 0.91417 0.84667 1.01142 1.22724 0.85860 0.97233 0.91444 1.45705 1.29009 1.44042 1.14585 1.18934 1.02016 1.14068 1.00465 0.90080 1.24815 0.98915 1.00268 0.96233 1.69812 1.35136 1.44421 1.07102 0.86169 0.81374 0.80821 0.77178 1.21134 1.21508 1.20971 1.22875 0.90594 0.94326 0.93664 1.21551 1.00792 0.90991 0.88181 1.21975 0.92227 1.00162 1.12436 1.17301 0.89595 0.82623 0.78787 1.90925 1.69533 1.30009 1.52661 0.87585 0.89745 0.89696 0.80278 0.77005 0.86952 0.95312 0.90422 0.93452 0.93153 0.94713 0.84181 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.29 10.55 59.85 0.63 0.92 16 2 N -0.49 -4.60 2.95 -126.73 -0.37 -4.98 16 3 C 0.20 1.92 9.92 -16.43 -0.16 1.76 16 4 C -0.25 -2.68 5.88 -104.95 -0.62 -3.30 16 5 C 0.57 8.23 7.76 -12.50 -0.10 8.13 16 6 O -0.55 -9.79 15.94 5.27 0.08 -9.70 16 7 N -0.71 -10.08 5.33 -56.41 -0.30 -10.38 16 8 C 0.09 1.71 4.40 -70.15 -0.31 1.40 16 9 C 0.15 3.56 7.33 -2.84 -0.02 3.54 16 10 N -0.61 -15.19 3.70 -177.88 -0.66 -15.85 16 11 C -0.23 -6.28 10.70 -15.06 -0.16 -6.44 16 12 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 13 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 14 N -0.92 -27.09 11.39 55.49 0.63 -26.45 16 15 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.11 2.14 8.69 -2.97 -0.03 2.12 16 20 C 0.01 0.06 9.57 -39.11 -0.37 -0.31 16 21 C -0.25 -2.48 9.97 -39.44 -0.39 -2.87 16 22 C 0.51 6.08 7.40 -15.41 -0.11 5.96 16 23 O -0.55 -8.13 16.33 4.95 0.08 -8.05 16 24 H 0.11 0.78 6.83 -51.93 -0.35 0.43 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.18 1.41 7.59 -52.48 -0.40 1.01 16 28 H 0.40 4.42 6.78 -40.82 -0.28 4.15 16 29 H 0.11 2.25 7.50 -51.93 -0.39 1.86 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 2.06 7.16 -51.93 -0.37 1.69 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.14 0.97 6.48 -52.49 -0.34 0.63 16 36 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -35.32 311.39 -6.82 -42.14 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.21 Total: 1.04 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -1.74 Total: 10.67 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.70 Total: -57.65 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.16 Total: -17.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.32 -6.82 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030603143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.887 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds