Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34591 * 119.47706 * 2 1 4 4 C 1.38000 * 120.45783 * 179.97438 * 3 2 1 5 5 C 1.47457 * 120.25448 * 180.27958 * 4 3 2 6 6 O 1.21607 * 120.00642 * 359.72120 * 5 4 3 7 7 N 1.34785 * 119.99709 * 179.72538 * 5 4 3 8 8 C 1.46504 * 119.99734 * 179.97438 * 7 5 4 9 9 C 1.53941 * 113.74305 * 253.73925 * 8 7 5 10 10 N 1.47811 * 86.03880 * 222.09027 * 9 8 7 11 11 C 1.36938 * 134.45546 * 204.65101 * 10 9 8 12 12 H 1.08006 * 119.99539 * 179.86296 * 11 10 9 13 13 C 1.38805 * 120.00243 * 359.85825 * 11 10 9 14 14 N 1.31619 * 119.99933 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47183 * 59.99960 * 15 13 11 17 17 H 1.48504 * 109.47290 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46984 * 299.99776 * 15 13 11 19 19 C 1.47584 * 91.04860 * 24.54792 * 10 9 8 20 20 C 1.41595 * 119.48457 * 0.02562 * 4 3 2 21 21 C 1.35974 * 119.01163 * 359.97438 * 20 4 3 22 22 C 1.34536 * 119.47884 * 179.97438 * 2 1 3 23 23 O 1.21964 * 119.74633 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47189 * 300.01879 * 1 2 3 26 26 H 1.09005 * 109.47069 * 60.02121 * 1 2 3 27 27 H 1.08005 * 119.77379 * 0.02562 * 3 2 1 28 28 H 0.96995 * 119.99966 * 359.97438 * 7 5 4 29 29 H 1.08999 * 112.94287 * 25.33282 * 8 7 5 30 30 H 1.09005 * 113.76844 * 336.35498 * 9 8 7 31 31 H 1.08998 * 113.76765 * 107.74928 * 9 8 7 32 32 H 0.96996 * 120.00232 * 179.97438 * 14 13 11 33 33 H 1.09003 * 113.76477 * 221.15237 * 19 10 9 34 34 H 1.09003 * 113.76705 * 89.76012 * 19 10 9 35 35 H 1.08001 * 120.49060 * 180.02562 * 20 4 3 36 36 H 1.07999 * 120.25131 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 0.0005 5 6 4.2281 2.4816 0.0067 6 8 3.6069 3.5270 0.0063 7 7 5.5759 2.4986 0.0128 8 6 6.2923 3.7765 0.0184 9 6 6.9456 4.1267 -1.3307 10 7 8.1090 4.5722 -0.5352 11 6 9.1322 5.4577 -0.7455 12 1 9.8801 5.6100 0.0187 13 6 9.2082 6.1594 -1.9407 14 7 8.2966 5.9740 -2.8718 15 14 10.6044 7.3667 -2.2278 16 1 11.9026 6.6500 -2.1493 17 1 10.4585 7.9819 -3.5715 18 1 10.5617 8.4286 -1.1905 19 6 7.7236 3.6820 0.5770 20 6 4.2250 -0.0251 0.0005 21 6 3.5344 -1.1965 0.0005 22 6 2.1271 -1.1712 0.0005 23 8 1.5030 -2.2191 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.5751 2.0999 0.0004 28 1 6.0714 1.6647 0.0135 29 1 5.7067 4.5899 0.4468 30 1 7.1490 3.2593 -1.9587 31 1 6.4433 4.9325 -1.8660 32 1 8.3495 6.4646 -3.7069 33 1 7.8416 4.1335 1.5621 34 1 8.1562 2.6837 0.5107 35 1 5.3050 -0.0256 0.0014 36 1 4.0617 -2.1390 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030603143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = 2.142750 kcal Electronic energy + Delta-G solvation = -20629.471898 eV Core-core repulsion = 17308.406130 eV Total energy + Delta-G solvation = -3321.065768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56828 -40.87172 -39.21831 -37.91688 -35.88927 -34.98477 -33.65103 -31.20062 -29.51062 -28.63369 -26.57607 -25.92879 -24.53029 -24.14120 -21.86583 -21.33595 -19.16401 -18.74462 -18.50433 -17.81039 -17.22533 -17.10814 -16.92592 -16.71070 -15.82768 -15.64116 -15.30037 -15.27640 -14.56081 -14.33735 -14.20919 -13.64111 -13.48077 -13.28555 -13.16649 -13.07514 -12.78367 -12.72146 -12.57161 -12.26485 -11.94517 -11.49205 -11.23347 -11.18611 -11.00704 -10.85050 -9.96116 -9.12276 -8.93913 -7.89601 -5.24410 -0.25524 0.24461 1.44735 1.47950 1.51277 1.57279 1.92740 2.21253 2.52646 2.67302 3.28853 3.41176 3.55595 3.65637 3.79521 3.83131 3.90102 4.08798 4.35148 4.40414 4.42915 4.57145 4.75499 4.79989 4.90199 4.94656 4.96414 5.06223 5.20250 5.27203 5.33700 5.52227 5.74005 5.83096 5.92819 6.62769 6.77914 6.90966 7.28798 7.61044 8.53862 9.26835 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045409 B = 0.003175 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.468817 B = 8816.393658 C = 9012.466342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.222 3.778 4 C -0.258 4.258 5 C 0.576 3.424 6 O -0.585 6.585 7 N -0.698 5.698 8 C 0.124 3.876 9 C 0.150 3.850 10 N -0.640 5.640 11 C -0.235 4.235 12 H 0.090 0.910 13 C -0.068 4.068 14 N -0.954 5.954 15 Si 0.981 3.019 16 H -0.275 1.275 17 H -0.297 1.297 18 H -0.276 1.276 19 C 0.121 3.879 20 C 0.021 3.979 21 C -0.257 4.257 22 C 0.503 3.497 23 O -0.587 6.587 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.198 0.802 28 H 0.414 0.586 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.248 0.752 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 -12.897 7.756 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.193 5.193 3 C 0.088 3.912 4 C -0.266 4.266 5 C 0.365 3.635 6 O -0.467 6.467 7 N -0.350 5.350 8 C 0.018 3.982 9 C 0.023 3.977 10 N -0.367 5.367 11 C -0.363 4.363 12 H 0.108 0.892 13 C -0.261 4.261 14 N -0.603 5.603 15 Si 0.809 3.191 16 H -0.201 1.201 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.004 4.004 20 C 0.000 4.000 21 C -0.278 4.278 22 C 0.307 3.693 23 O -0.473 6.473 24 H 0.111 0.889 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.215 0.785 28 H 0.252 0.748 29 H 0.115 0.885 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.184 0.816 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.299 -12.641 7.607 19.863 hybrid contribution 1.028 0.408 -0.678 1.298 sum -12.271 -12.233 6.929 18.661 Atomic orbital electron populations 1.22612 0.74609 1.06479 1.06233 1.45269 1.11223 1.06220 1.56596 1.22512 0.92880 0.90366 0.85465 1.19316 0.93033 0.93570 1.20689 1.17967 0.82269 0.88148 0.75092 1.90783 1.68068 1.35060 1.52796 1.45697 1.05748 1.09582 1.73958 1.23167 0.91554 0.86087 0.97403 1.22631 0.86153 0.95679 0.93203 1.46045 1.28868 1.44990 1.16804 1.19386 1.02417 1.14085 1.00455 0.89248 1.25677 1.01510 1.02561 0.96379 1.70020 1.37119 1.45793 1.07332 0.85120 0.78746 0.78709 0.76549 1.20070 1.22316 1.20145 1.23039 0.90063 0.94700 0.92629 1.21696 1.01970 0.89769 0.86604 1.22060 0.91564 1.01025 1.13138 1.17657 0.90363 0.82703 0.78562 1.90906 1.70365 1.31329 1.54712 0.88898 0.87257 0.87518 0.78538 0.74837 0.88545 0.95530 0.94815 0.94315 0.91653 0.91480 0.81599 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.55 127.77 1.35 1.77 16 2 N -0.49 -8.16 2.95 -673.10 -1.99 -10.15 16 3 C 0.22 3.65 9.92 84.21 0.84 4.48 16 4 C -0.26 -5.03 5.88 -20.08 -0.12 -5.15 16 5 C 0.58 15.53 7.76 86.67 0.67 16.20 16 6 O -0.59 -20.40 15.94 -4.05 -0.06 -20.47 16 7 N -0.70 -18.34 5.33 -450.62 -2.40 -20.74 16 8 C 0.12 4.45 4.40 46.74 0.21 4.66 16 9 C 0.15 7.04 7.33 86.44 0.63 7.67 16 10 N -0.64 -31.78 3.70 -716.68 -2.65 -34.43 16 11 C -0.24 -12.93 10.70 84.03 0.90 -12.04 16 12 H 0.09 4.62 7.83 -2.91 -0.02 4.59 16 13 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 14 N -0.95 -57.84 11.39 21.65 0.25 -57.59 16 15 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.12 4.33 8.69 86.48 0.75 5.08 16 20 C 0.02 0.33 9.57 22.57 0.22 0.55 16 21 C -0.26 -4.65 9.97 22.36 0.22 -4.43 16 22 C 0.50 11.24 7.40 84.90 0.63 11.87 16 23 O -0.59 -17.19 16.33 -5.20 -0.08 -17.27 16 24 H 0.09 1.28 6.83 -2.39 -0.02 1.27 16 25 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.20 2.57 7.59 -2.91 -0.02 2.55 16 28 H 0.41 7.87 6.78 -92.71 -0.63 7.24 16 29 H 0.10 3.84 7.50 -2.39 -0.02 3.82 16 30 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.03 1.86 7.16 -2.39 -0.02 1.84 16 32 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 35 H 0.17 1.66 6.48 -2.91 -0.02 1.64 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -78.49 311.39 2.33 -76.15 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.49 Total: 9.90 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 6.76 Total: 27.27 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.79 Total: -122.90 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.15 Total: -37.74 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.49 2.33 -76.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030603143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.297 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds