Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35749 * 117.00128 * 2 1 4 4 C 1.39216 * 120.81337 * 0.24861 * 3 2 1 5 5 C 1.38308 * 119.28610 * 180.29910 * 4 3 2 6 6 N 1.31609 * 120.97428 * 359.71892 * 5 4 3 7 7 C 1.32800 * 121.78196 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.70177 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00308 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99475 * 359.97438 * 8 7 6 11 11 C 1.46506 * 119.99517 * 179.97438 * 10 8 7 12 12 C 1.53942 * 113.73901 * 253.73833 * 11 10 8 13 13 N 1.47811 * 86.03589 * 222.08565 * 12 11 10 14 14 C 1.36940 * 134.45781 * 204.64639 * 13 12 11 15 15 H 1.08004 * 119.99635 * 173.34459 * 14 13 12 16 16 C 1.38808 * 119.99919 * 353.34791 * 14 13 12 17 17 N 1.31614 * 120.00349 * 5.06472 * 16 14 13 18 18 Si 1.86804 * 119.99879 * 185.06156 * 16 14 13 19 19 H 1.48508 * 109.46759 * 94.98713 * 18 16 14 20 20 H 1.48504 * 109.47188 * 214.98462 * 18 16 14 21 21 H 1.48496 * 109.47141 * 334.99074 * 18 16 14 22 22 C 1.47579 * 91.05208 * 24.54779 * 13 12 11 23 23 C 1.39103 * 120.60416 * 0.02562 * 7 6 5 24 24 H 1.08993 * 109.47303 * 299.99976 * 1 2 3 25 25 H 1.09000 * 109.47038 * 59.99811 * 1 2 3 26 26 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.35399 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.51353 * 179.74524 * 5 4 3 29 29 H 0.96996 * 120.00434 * 359.97438 * 10 8 7 30 30 H 1.09001 * 112.94622 * 25.33144 * 11 10 8 31 31 H 1.09004 * 113.77253 * 336.34889 * 12 11 10 32 32 H 1.09000 * 113.77303 * 107.75097 * 12 11 10 33 33 H 0.96995 * 120.00231 * 180.02562 * 17 16 14 34 34 H 1.08998 * 113.77703 * 221.15321 * 22 13 12 35 35 H 1.09008 * 113.76969 * 89.75439 * 22 13 12 36 36 H 1.07997 * 120.51310 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0052 5 6 1.9643 3.6029 -0.0013 6 7 3.2792 3.6591 -0.0067 7 6 4.0262 2.5611 -0.0067 8 6 5.5034 2.6780 -0.0123 9 8 6.1922 1.6770 -0.0119 10 7 6.0829 3.8949 -0.0179 11 6 7.5434 4.0105 -0.0229 12 6 8.1344 4.4570 1.3266 13 7 9.0264 5.3271 0.5316 14 6 10.2587 5.8857 0.7425 15 1 10.7569 6.4127 -0.0580 16 6 10.8677 5.7745 1.9849 17 7 10.3081 5.0488 2.9295 18 14 12.4817 6.6548 2.3160 19 1 12.2080 7.9640 2.9616 20 1 13.3225 5.8252 3.2161 21 1 13.1975 6.8753 1.0338 22 6 8.0572 5.3500 -0.5811 23 6 3.4346 1.3021 -0.0014 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2243 2.3532 0.0097 28 1 1.3926 4.5192 -0.0015 29 1 5.5331 4.6940 -0.0187 30 1 8.0373 3.1383 -0.4513 31 1 7.4315 5.0048 1.9544 32 1 8.6557 3.6635 1.8620 33 1 10.7335 4.9715 3.7978 34 1 8.5168 5.2682 -1.5660 35 1 7.3315 6.1608 -0.5150 36 1 4.0435 0.4102 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030775165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 0.695287 kcal Electronic energy + Delta-G solvation = -20449.386904 eV Core-core repulsion = 17128.258369 eV Total energy + Delta-G solvation = -3321.128535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91754 -40.79281 -39.47408 -38.80048 -35.22467 -33.84751 -32.69340 -32.34588 -29.48192 -28.50719 -26.64687 -26.03529 -24.41295 -24.32147 -21.85345 -21.37153 -19.67104 -18.77997 -18.42855 -17.42734 -17.16587 -16.98029 -16.86625 -16.68557 -16.11118 -15.75213 -15.70941 -15.21878 -14.76666 -14.70262 -14.32484 -13.73137 -13.38386 -13.33394 -13.23895 -12.82665 -12.65465 -12.52065 -12.31709 -12.30165 -11.95605 -11.53860 -11.37670 -10.89349 -10.69405 -10.39453 -10.00426 -9.95843 -8.97676 -7.93335 -5.28422 -0.46377 0.22218 1.45992 1.48693 1.57979 1.65443 1.81597 2.28634 2.49978 2.79962 3.08258 3.24241 3.41830 3.60325 3.81045 3.82250 3.97611 4.13322 4.30965 4.36529 4.40621 4.48979 4.50881 4.72352 4.74988 4.77460 4.89547 4.93943 5.11429 5.20378 5.36893 5.46616 5.64268 5.87145 6.15999 6.41535 6.81140 6.87067 7.13016 7.57089 8.50625 9.24382 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.048120 B = 0.003064 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.735018 B = 9137.527886 C = 9291.366245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.224 4.224 5 C 0.136 3.864 6 N -0.496 5.496 7 C 0.103 3.897 8 C 0.565 3.435 9 O -0.572 6.572 10 N -0.681 5.681 11 C 0.115 3.885 12 C 0.156 3.844 13 N -0.638 5.638 14 C -0.236 4.236 15 H 0.092 0.908 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.984 3.016 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.124 3.876 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.186 0.814 28 H 0.206 0.794 29 H 0.420 0.580 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.249 0.751 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.890 -5.029 -7.874 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.105 3.895 4 C -0.245 4.245 5 C -0.023 4.023 6 N -0.212 5.212 7 C -0.033 4.033 8 C 0.350 3.650 9 O -0.451 6.451 10 N -0.331 5.331 11 C 0.009 3.991 12 C 0.030 3.970 13 N -0.365 5.365 14 C -0.364 4.364 15 H 0.110 0.890 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.812 3.188 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.187 1.187 22 C -0.001 4.001 23 C -0.185 4.185 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.139 0.861 27 H 0.203 0.797 28 H 0.223 0.777 29 H 0.258 0.742 30 H 0.116 0.884 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.589 -5.076 -7.736 26.272 hybrid contribution 0.296 -0.164 0.720 0.796 sum -24.293 -5.240 -7.016 25.823 Atomic orbital electron populations 1.23551 0.75007 1.06321 1.03268 1.86095 1.24648 1.25671 1.87505 1.19240 0.91317 0.86235 0.92700 1.22817 1.03644 0.91671 1.06345 1.23321 0.88585 0.99216 0.91152 1.67594 1.09018 1.30483 1.14107 1.20570 0.92902 0.89672 1.00178 1.18295 0.86964 0.83616 0.76105 1.90764 1.64659 1.37766 1.51949 1.45743 1.07205 1.08402 1.71797 1.23364 0.78702 0.99007 0.98030 1.22520 0.89715 0.91935 0.92868 1.46031 1.15274 1.58238 1.16937 1.19453 0.92274 1.28113 0.96563 0.88991 1.25780 1.03184 1.01490 0.95838 1.70055 1.41792 1.43880 1.04569 0.84977 0.78426 0.77449 0.77969 1.21211 1.22308 1.18728 1.22997 0.90734 0.93564 0.92837 1.21369 0.93567 0.98929 1.04639 0.90639 0.90465 0.86146 0.79728 0.77730 0.74220 0.88355 0.95703 0.95005 0.94214 0.91257 0.91749 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.67 10.51 -90.74 -0.95 -6.62 16 3 C 0.16 3.12 6.73 22.75 0.15 3.27 16 4 C -0.22 -2.87 9.12 22.52 0.21 -2.67 16 5 C 0.14 2.05 11.17 84.74 0.95 2.99 16 6 N -0.50 -11.81 9.54 -185.14 -1.77 -13.58 16 7 C 0.10 3.00 6.75 41.85 0.28 3.28 16 8 C 0.56 20.41 7.81 86.89 0.68 21.09 16 9 O -0.57 -24.80 15.94 -3.76 -0.06 -24.86 16 10 N -0.68 -23.56 5.36 -449.95 -2.41 -25.98 16 11 C 0.12 4.75 4.40 46.75 0.21 4.96 16 12 C 0.16 8.03 7.24 86.44 0.63 8.66 16 13 N -0.64 -33.85 3.70 -716.74 -2.65 -36.50 16 14 C -0.24 -13.53 10.69 84.03 0.90 -12.64 16 15 H 0.09 4.95 7.83 -2.91 -0.02 4.92 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 17 N -0.95 -60.06 11.51 21.65 0.25 -59.81 16 18 Si 0.98 46.69 29.56 68.60 2.03 48.72 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.12 4.99 8.69 86.49 0.75 5.74 16 23 C -0.16 -4.36 9.60 22.72 0.22 -4.14 16 24 H 0.08 0.26 7.70 -2.39 -0.02 0.24 16 25 H 0.08 0.23 7.72 -2.39 -0.02 0.21 16 26 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.19 0.74 6.45 -2.91 -0.02 0.72 16 28 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.42 12.50 8.04 -92.71 -0.75 11.76 16 30 H 0.10 4.38 7.51 -2.39 -0.02 4.36 16 31 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.03 1.87 7.37 -2.39 -0.02 1.86 16 33 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.30 8.11 -2.38 -0.02 2.29 16 36 H 0.14 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -78.56 314.13 1.35 -77.22 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.37 Total: 13.31 kcal Atomic # 6 Polarization: 21.55 SS G_CDS: 6.55 Total: 28.10 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -6.58 Total: -135.87 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.01 Total: -31.48 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -78.56 1.35 -77.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030775165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.913 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds