Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39294 * 119.61533 * 179.72982 * 3 2 1 5 5 C 1.38331 * 119.29975 * 179.75563 * 4 3 2 6 6 C 1.38783 * 118.56086 * 0.50831 * 5 4 3 7 7 C 1.39123 * 119.18954 * 359.72998 * 6 5 4 8 8 C 1.48148 * 119.68942 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7 12 12 C 1.53951 * 113.73812 * 253.73943 * 11 10 8 13 13 N 1.47820 * 86.03563 * 222.08367 * 12 11 10 14 14 C 1.36937 * 134.45818 * 204.64568 * 13 12 11 15 15 H 1.07997 * 120.00191 * 179.86755 * 14 13 12 16 16 C 1.38811 * 119.99574 * 359.86569 * 14 13 12 17 17 N 1.31619 * 120.00360 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99712 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47212 * 60.00058 * 18 16 14 20 20 H 1.48507 * 109.47299 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47092 * 299.99729 * 18 16 14 22 22 C 1.47579 * 91.05102 * 24.54952 * 13 12 11 23 23 N 1.31892 * 119.61554 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 25 25 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 26 26 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.34714 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.71561 * 180.21954 * 5 4 3 29 29 H 1.08004 * 120.40463 * 179.75250 * 6 5 4 30 30 H 0.97007 * 119.99895 * 359.97438 * 10 8 7 31 31 H 1.08993 * 112.94667 * 25.32866 * 11 10 8 32 32 H 1.09000 * 113.76752 * 336.34330 * 12 11 10 33 33 H 1.08990 * 113.77061 * 107.74648 * 12 11 10 34 34 H 0.96997 * 119.99889 * 180.02562 * 17 16 14 35 35 H 1.09003 * 113.76948 * 221.15742 * 22 13 12 36 36 H 1.09000 * 113.76963 * 89.75271 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4365 1.2723 0.0057 5 6 4.0578 2.5082 0.0005 6 6 3.2667 3.6485 0.0006 7 6 1.8820 3.5137 0.0001 8 6 1.0270 4.7235 0.0007 9 8 1.5356 5.8270 0.0011 10 7 -0.3151 4.6001 0.0007 11 6 -1.1607 5.7965 0.0007 12 6 -1.8406 6.0748 1.3536 13 7 -3.0478 6.3981 0.5642 14 6 -4.1566 7.1718 0.7808 15 1 -4.9198 7.2466 0.0203 16 6 -4.2996 7.8600 1.9778 17 7 -3.3697 7.7684 2.9048 18 14 -5.8126 8.9150 2.2736 19 1 -7.0295 8.0671 2.1996 20 1 -5.7257 9.5391 3.6183 21 1 -5.8856 9.9770 1.2383 22 6 -2.5772 5.5544 -0.5515 23 7 1.3193 2.3101 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0241 0.3661 0.0105 28 1 5.1352 2.5841 0.0012 29 1 3.7205 4.6286 0.0006 30 1 -0.7212 3.7192 -0.0001 31 1 -0.6651 6.6671 -0.4287 32 1 -1.9497 5.1900 1.9807 33 1 -1.4225 6.9276 1.8882 34 1 -3.4699 8.2490 3.7413 35 1 -2.7459 5.9927 -1.5352 36 1 -2.9031 4.5164 -0.4852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031188659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = 27.722263 kcal Electronic energy + Delta-G solvation = -20769.150065 eV Core-core repulsion = 17449.193507 eV Total energy + Delta-G solvation = -3319.956558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96707 -39.41934 -38.05344 -37.26004 -33.73460 -32.70732 -31.70947 -30.95454 -27.73997 -27.34648 -24.94439 -24.82293 -23.16992 -22.79033 -20.70547 -19.68638 -18.43308 -17.76274 -16.78383 -16.25772 -16.21966 -15.92689 -15.74429 -15.01764 -14.62000 -14.38732 -14.14489 -13.82218 -13.50505 -13.32468 -12.67376 -12.47317 -11.97878 -11.88551 -11.49619 -11.45493 -11.34012 -10.88975 -10.78154 -10.49232 -10.37971 -10.20375 -10.06260 -9.59728 -9.51178 -8.80986 -8.79028 -8.43181 -6.92662 -5.77364 -3.11597 0.51731 1.04551 2.82707 2.83221 3.29592 3.40745 3.44414 3.45855 3.78046 3.96771 4.45433 4.67312 4.78325 4.81718 5.04860 5.10786 5.15033 5.16827 5.28653 5.47659 5.48466 5.56510 5.72130 5.89423 6.01181 6.09838 6.20815 6.40790 6.54457 6.72821 6.94299 7.22834 7.31640 7.44350 7.56052 7.88417 7.95909 8.44407 9.02328 9.68821 10.55174 11.39328 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029444 B = 0.003670 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.738458 B = 7628.421866 C = 8169.670557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.319 3.681 4 C -0.172 4.172 5 C -0.048 4.048 6 C -0.150 4.150 7 C 0.127 3.873 8 C 0.565 3.435 9 O -0.532 6.532 10 N -0.692 5.692 11 C 0.088 3.912 12 C 0.155 3.845 13 N -0.606 5.606 14 C -0.227 4.227 15 H 0.082 0.918 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.915 3.085 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.114 3.886 23 N -0.517 5.517 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.405 0.595 31 H 0.113 0.887 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 -15.512 -6.586 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.137 3.863 4 C -0.193 4.193 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.010 4.010 8 C 0.348 3.652 9 O -0.408 6.408 10 N -0.342 5.342 11 C -0.017 4.017 12 C 0.029 3.971 13 N -0.333 5.333 14 C -0.355 4.355 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.013 4.013 23 N -0.244 5.244 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.241 0.759 31 H 0.131 0.869 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.572 -14.778 -6.388 20.426 hybrid contribution -0.482 0.068 0.335 0.591 sum 12.090 -14.710 -6.053 19.979 Atomic orbital electron populations 1.22928 0.76783 1.03185 1.02944 1.86233 1.23259 1.24149 1.87885 1.19772 0.89403 0.84474 0.92608 1.21265 0.91967 0.99840 1.06225 1.21447 1.00872 0.90830 0.94194 1.22031 0.93131 1.00920 1.01054 1.21009 0.92378 0.90299 0.97298 1.17860 0.82755 0.87104 0.77462 1.90795 1.73927 1.25733 1.50352 1.46024 1.05242 1.11065 1.71840 1.24026 0.89036 0.87249 1.01348 1.22711 0.84494 0.98560 0.91338 1.45706 1.21790 1.51197 1.14623 1.18940 0.96297 1.19719 1.00499 0.90064 1.24817 0.98617 1.00562 0.96232 1.69818 1.33874 1.45637 1.07177 0.86166 0.82049 0.80127 0.77185 1.21150 1.21506 1.20960 1.22860 0.89989 0.94869 0.93593 1.67172 1.41046 0.98263 1.17887 0.91869 0.92009 0.88508 0.83734 0.83373 0.83030 0.75935 0.86941 0.95295 0.90380 0.93458 0.93126 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.32 10.48 -18.70 -0.20 -3.51 16 3 C 0.32 3.69 7.49 -17.13 -0.13 3.57 16 4 C -0.17 -1.58 10.05 -39.15 -0.39 -1.97 16 5 C -0.05 -0.41 10.16 -39.35 -0.40 -0.81 16 6 C -0.15 -1.73 9.63 -39.05 -0.38 -2.11 16 7 C 0.13 1.79 6.75 -83.02 -0.56 1.23 16 8 C 0.56 9.61 7.81 -12.19 -0.10 9.51 16 9 O -0.53 -10.58 15.94 5.35 0.09 -10.49 16 10 N -0.69 -11.63 5.36 -56.18 -0.30 -11.94 16 11 C 0.09 1.76 4.40 -70.13 -0.31 1.45 16 12 C 0.16 3.78 7.33 -2.83 -0.02 3.76 16 13 N -0.61 -15.74 3.70 -177.85 -0.66 -16.40 16 14 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 18 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.11 2.31 8.69 -2.96 -0.03 2.29 16 23 N -0.52 -6.79 8.39 -9.88 -0.08 -6.87 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 29 H 0.15 1.68 7.63 -52.48 -0.40 1.28 16 30 H 0.41 6.06 8.04 -40.82 -0.33 5.74 16 31 H 0.11 2.39 7.51 -51.93 -0.39 2.00 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 2.15 7.16 -51.93 -0.37 1.78 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -33.42 316.34 -6.71 -40.12 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.41 Total: 2.67 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.52 Total: 11.46 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.41 Total: -62.23 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.11 Total: -14.00 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.42 -6.71 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031188659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds