Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39294 * 119.61533 * 179.72982 * 3 2 1 5 5 C 1.38331 * 119.29975 * 179.75563 * 4 3 2 6 6 C 1.38783 * 118.56086 * 0.50831 * 5 4 3 7 7 C 1.39123 * 119.18954 * 359.72998 * 6 5 4 8 8 C 1.48148 * 119.68942 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7 12 12 C 1.53951 * 113.73812 * 253.73943 * 11 10 8 13 13 N 1.47820 * 86.03563 * 222.08367 * 12 11 10 14 14 C 1.36937 * 134.45818 * 204.64568 * 13 12 11 15 15 H 1.07997 * 120.00191 * 179.86755 * 14 13 12 16 16 C 1.38811 * 119.99574 * 359.86569 * 14 13 12 17 17 N 1.31619 * 120.00360 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99712 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47212 * 60.00058 * 18 16 14 20 20 H 1.48507 * 109.47299 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47092 * 299.99729 * 18 16 14 22 22 C 1.47579 * 91.05102 * 24.54952 * 13 12 11 23 23 N 1.31892 * 119.61554 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 25 25 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 26 26 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.34714 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.71561 * 180.21954 * 5 4 3 29 29 H 1.08004 * 120.40463 * 179.75250 * 6 5 4 30 30 H 0.97007 * 119.99895 * 359.97438 * 10 8 7 31 31 H 1.08993 * 112.94667 * 25.32866 * 11 10 8 32 32 H 1.09000 * 113.76752 * 336.34330 * 12 11 10 33 33 H 1.08990 * 113.77061 * 107.74648 * 12 11 10 34 34 H 0.96997 * 119.99889 * 180.02562 * 17 16 14 35 35 H 1.09003 * 113.76948 * 221.15742 * 22 13 12 36 36 H 1.09000 * 113.76963 * 89.75271 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4365 1.2723 0.0057 5 6 4.0578 2.5082 0.0005 6 6 3.2667 3.6485 0.0006 7 6 1.8820 3.5137 0.0001 8 6 1.0270 4.7235 0.0007 9 8 1.5356 5.8270 0.0011 10 7 -0.3151 4.6001 0.0007 11 6 -1.1607 5.7965 0.0007 12 6 -1.8406 6.0748 1.3536 13 7 -3.0478 6.3981 0.5642 14 6 -4.1566 7.1718 0.7808 15 1 -4.9198 7.2466 0.0203 16 6 -4.2996 7.8600 1.9778 17 7 -3.3697 7.7684 2.9048 18 14 -5.8126 8.9150 2.2736 19 1 -7.0295 8.0671 2.1996 20 1 -5.7257 9.5391 3.6183 21 1 -5.8856 9.9770 1.2383 22 6 -2.5772 5.5544 -0.5515 23 7 1.3193 2.3101 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0241 0.3661 0.0105 28 1 5.1352 2.5841 0.0012 29 1 3.7205 4.6286 0.0006 30 1 -0.7212 3.7192 -0.0001 31 1 -0.6651 6.6671 -0.4287 32 1 -1.9497 5.1900 1.9807 33 1 -1.4225 6.9276 1.8882 34 1 -3.4699 8.2490 3.7413 35 1 -2.7459 5.9927 -1.5352 36 1 -2.9031 4.5164 -0.4852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031188659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = 1.907953 kcal Electronic energy + Delta-G solvation = -20770.269457 eV Core-core repulsion = 17449.193507 eV Total energy + Delta-G solvation = -3321.075950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91752 -40.76562 -39.38423 -38.49741 -35.28292 -34.04714 -33.29227 -31.86604 -29.50904 -28.29110 -26.66984 -26.18280 -24.55618 -23.86598 -22.00857 -21.39470 -19.48720 -18.86639 -18.72828 -17.32784 -17.10779 -16.99411 -16.97890 -16.84634 -16.04334 -15.72834 -15.47803 -15.13859 -14.67509 -14.32986 -14.19906 -13.71142 -13.35007 -13.25936 -13.19670 -12.82087 -12.67374 -12.65264 -12.35709 -12.15188 -11.99181 -11.61783 -11.52855 -11.00141 -10.89605 -10.69503 -10.07097 -9.59919 -9.00419 -7.93080 -5.29301 -0.41268 0.24699 1.45330 1.49777 1.55917 1.66284 1.96792 2.10405 2.47832 2.78490 2.95492 3.23517 3.38538 3.79533 3.83173 3.94577 4.04412 4.23385 4.30254 4.46910 4.46968 4.48006 4.50802 4.70382 4.82425 4.85979 4.95930 5.06758 5.14534 5.19781 5.35764 5.44818 5.61349 5.86234 6.11908 6.37461 6.68006 6.85899 7.10310 7.56235 8.48665 9.23649 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029444 B = 0.003670 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.738458 B = 7628.421866 C = 8169.670557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.301 3.699 4 C -0.156 4.156 5 C -0.034 4.034 6 C -0.150 4.150 7 C 0.098 3.902 8 C 0.564 3.436 9 O -0.568 6.568 10 N -0.685 5.685 11 C 0.116 3.884 12 C 0.154 3.846 13 N -0.636 5.636 14 C -0.239 4.239 15 H 0.092 0.908 16 C -0.068 4.068 17 N -0.956 5.956 18 Si 0.985 3.015 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.123 3.877 23 N -0.531 5.531 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.178 0.822 28 H 0.193 0.807 29 H 0.151 0.849 30 H 0.416 0.584 31 H 0.099 0.901 32 H 0.022 0.978 33 H 0.037 0.963 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.178 -17.486 -7.773 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.219 6.219 3 C 0.119 3.881 4 C -0.176 4.176 5 C -0.058 4.058 6 C -0.172 4.172 7 C -0.038 4.038 8 C 0.350 3.650 9 O -0.447 6.447 10 N -0.335 5.335 11 C 0.010 3.990 12 C 0.027 3.973 13 N -0.364 5.364 14 C -0.367 4.367 15 H 0.110 0.890 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.812 3.188 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.200 1.200 22 C -0.002 4.002 23 N -0.258 5.258 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.142 0.858 27 H 0.196 0.804 28 H 0.210 0.790 29 H 0.169 0.831 30 H 0.253 0.747 31 H 0.117 0.883 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.461 -16.801 -7.618 22.836 hybrid contribution -0.656 0.546 0.668 1.084 sum 12.805 -16.255 -6.950 21.829 Atomic orbital electron populations 1.23072 0.76025 1.04795 1.02249 1.86241 1.24079 1.23686 1.87889 1.20190 0.90571 0.84202 0.93145 1.21744 0.91100 1.01384 1.03415 1.21903 1.02656 0.89248 0.92042 1.22209 0.92317 1.02284 1.00371 1.20549 0.92762 0.89410 1.01061 1.18361 0.82674 0.87919 0.76010 1.90765 1.74495 1.27504 1.51895 1.45790 1.05289 1.10407 1.72059 1.23332 0.89537 0.88116 0.97981 1.22570 0.85183 0.96613 0.92924 1.46029 1.21618 1.52152 1.16563 1.19423 0.97009 1.19577 1.00700 0.89044 1.25738 1.01749 1.02358 0.96221 1.70037 1.35956 1.46968 1.07445 0.85061 0.78590 0.78462 0.76642 1.19955 1.22170 1.19961 1.22990 0.89024 0.95371 0.92812 1.66992 1.41913 0.98387 1.18528 0.92920 0.92332 0.85807 0.80437 0.79016 0.83077 0.74669 0.88275 0.95993 0.94497 0.94208 0.91317 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.38 113.37 1.18 1.71 16 2 O -0.31 -6.06 10.48 -89.81 -0.94 -7.00 16 3 C 0.30 6.35 7.49 84.94 0.64 6.98 16 4 C -0.16 -2.28 10.05 22.55 0.23 -2.05 16 5 C -0.03 -0.45 10.16 22.42 0.23 -0.23 16 6 C -0.15 -3.23 9.63 22.61 0.22 -3.01 16 7 C 0.10 2.70 6.75 41.83 0.28 2.98 16 8 C 0.56 19.56 7.81 86.88 0.68 20.24 16 9 O -0.57 -23.31 15.94 -3.75 -0.06 -23.37 16 10 N -0.69 -23.28 5.36 -449.95 -2.41 -25.69 16 11 C 0.12 4.74 4.40 46.75 0.21 4.94 16 12 C 0.15 7.81 7.33 86.44 0.63 8.44 16 13 N -0.64 -33.48 3.70 -716.58 -2.65 -36.13 16 14 C -0.24 -13.62 10.70 84.03 0.90 -12.72 16 15 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 17 N -0.96 -59.62 11.39 21.65 0.25 -59.37 16 18 Si 0.99 46.30 29.55 68.60 2.03 48.32 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 C 0.12 4.92 8.69 86.49 0.75 5.67 16 23 N -0.53 -13.47 8.39 -298.21 -2.50 -15.97 16 24 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 25 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 26 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.15 3.22 7.63 -2.91 -0.02 3.20 16 30 H 0.42 12.36 8.04 -92.70 -0.75 11.62 16 31 H 0.10 4.35 7.51 -2.39 -0.02 4.33 16 32 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 2.15 7.16 -2.39 -0.02 2.14 16 34 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 Total: -1.00 -75.02 316.34 0.47 -74.55 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.36 Total: 15.17 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 6.40 Total: 29.49 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -7.32 Total: -137.16 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.00 Total: -30.37 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -75.02 0.47 -74.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031188659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.461 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds