Wall clock time and date at job start Mon Mar 30 2020 01:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35440 * 119.46594 * 2 1 4 4 C 1.35758 * 121.22780 * 180.02562 * 3 2 1 5 5 C 1.39476 * 120.13108 * 359.96875 * 4 3 2 6 6 C 1.39336 * 118.95625 * 0.02724 * 5 4 3 7 7 C 1.47088 * 120.58279 * 179.72234 * 6 5 4 8 8 O 1.21651 * 120.00160 * 354.12219 * 7 6 5 9 9 N 1.34777 * 119.99960 * 174.12227 * 7 6 5 10 10 C 1.46502 * 120.00068 * 185.11739 * 9 7 6 11 11 C 1.53948 * 113.73664 * 253.74046 * 10 9 7 12 12 N 1.47815 * 86.03083 * 222.08160 * 11 10 9 13 13 C 1.36943 * 134.45316 * 204.64693 * 12 11 10 14 14 H 1.07995 * 119.99840 * 184.78036 * 13 12 11 15 15 C 1.38810 * 120.00168 * 4.76973 * 13 12 11 16 16 N 1.31624 * 120.00232 * 354.88461 * 15 13 12 17 17 Si 1.86799 * 120.00170 * 174.87821 * 15 13 12 18 18 H 1.48500 * 109.47202 * 95.00350 * 17 15 13 19 19 H 1.48501 * 109.47068 * 215.00360 * 17 15 13 20 20 H 1.48498 * 109.47143 * 335.00374 * 17 15 13 21 21 C 1.47569 * 91.05230 * 24.54930 * 12 11 10 22 22 C 1.34648 * 119.47273 * 180.02562 * 2 1 3 23 23 O 1.21883 * 120.10839 * 359.97438 * 22 2 1 24 24 H 1.08996 * 109.47341 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47156 * 120.00823 * 1 2 3 26 26 H 1.09003 * 109.47061 * 239.99987 * 1 2 3 27 27 H 1.07997 * 119.38684 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.93392 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.52198 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99866 * 5.11268 * 9 7 6 31 31 H 1.08994 * 112.94531 * 25.32508 * 10 9 7 32 32 H 1.08994 * 113.77338 * 336.34196 * 11 10 9 33 33 H 1.09005 * 113.76838 * 107.74704 * 11 10 9 34 34 H 0.96992 * 120.00095 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.76843 * 221.14665 * 21 12 11 36 36 H 1.09007 * 113.77081 * 89.75371 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1792 0.0000 4 6 3.4882 1.2209 -0.0005 5 6 4.2251 0.0367 -0.0004 6 6 3.5464 -1.1801 -0.0003 7 6 4.2877 -2.4505 -0.0064 8 8 5.4990 -2.4474 -0.1193 9 7 3.6251 -3.6180 0.1133 10 6 4.3695 -4.8753 0.2201 11 6 4.3243 -5.7327 -1.0577 12 7 4.1362 -6.8867 -0.1533 13 6 4.3841 -8.2301 -0.2485 14 1 4.0787 -8.8933 0.5473 15 6 5.0279 -8.7396 -1.3678 16 7 5.3099 -7.9489 -2.3817 17 14 5.4942 -10.5472 -1.4353 18 1 4.4302 -11.3069 -2.1396 19 1 6.7780 -10.7002 -2.1659 20 1 5.6451 -11.0713 -0.0542 21 6 3.5765 -6.0099 0.8934 22 6 2.1275 -1.1722 -0.0005 23 8 1.5104 -2.2233 -0.0005 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5140 -0.8899 26 1 -0.3633 -0.5138 0.8900 27 1 1.5727 2.1035 -0.0004 28 1 3.9981 2.1730 -0.0009 29 1 5.3048 0.0626 -0.0004 30 1 2.6552 -3.6258 0.1287 31 1 5.3732 -4.7418 0.6237 32 1 3.4632 -5.5282 -1.6938 33 1 5.2656 -5.7525 -1.6070 34 1 5.7600 -8.3048 -3.1636 35 1 3.9217 -6.2506 1.8989 36 1 2.4952 -5.8869 0.8316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031275661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:55 Heat of formation + Delta-G solvation = 34.311760 kcal Electronic energy + Delta-G solvation = -21066.304292 eV Core-core repulsion = 17746.633476 eV Total energy + Delta-G solvation = -3319.670815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68689 -39.11293 -37.37310 -37.28726 -34.64053 -33.14577 -31.62838 -30.33248 -28.04025 -27.38432 -25.10109 -24.64180 -22.99782 -22.67977 -20.59082 -19.40888 -17.93010 -17.64623 -16.99233 -16.62270 -16.44714 -15.71763 -15.37600 -14.82586 -14.73897 -14.21503 -13.84669 -13.70830 -13.33460 -13.17984 -12.79152 -12.55085 -12.47408 -12.17698 -11.69870 -11.28710 -11.26739 -10.82234 -10.65010 -10.34155 -10.24899 -10.13644 -9.92455 -9.50713 -9.40395 -8.64849 -8.36192 -8.07330 -6.78667 -5.66135 -2.99382 0.24207 1.55446 2.20087 2.87848 3.46294 3.50656 3.53913 3.77335 3.83517 4.12904 4.19516 4.55768 4.68153 4.70712 4.86604 4.93450 5.08338 5.20021 5.33619 5.54684 5.59756 5.68786 5.79415 5.94630 6.11995 6.21526 6.41553 6.60255 6.63948 6.74644 7.04906 7.39560 7.56946 7.64825 7.71508 8.08186 8.29249 8.86320 9.13909 9.80330 10.69928 11.50663 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.003706 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.447277 B = 7554.502859 C = 7940.575289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.495 5.495 3 C 0.150 3.850 4 C -0.237 4.237 5 C 0.050 3.950 6 C -0.262 4.262 7 C 0.569 3.431 8 O -0.554 6.554 9 N -0.700 5.700 10 C 0.091 3.909 11 C 0.153 3.847 12 N -0.608 5.608 13 C -0.223 4.223 14 H 0.081 0.919 15 C -0.007 4.007 16 N -0.918 5.918 17 Si 0.913 3.087 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.113 3.887 22 C 0.526 3.474 23 O -0.535 6.535 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.412 0.588 31 H 0.107 0.893 32 H 0.027 0.973 33 H 0.078 0.922 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 24.699 5.694 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.204 5.204 3 C 0.021 3.979 4 C -0.261 4.261 5 C 0.027 3.973 6 C -0.270 4.270 7 C 0.355 3.645 8 O -0.435 6.435 9 N -0.359 5.359 10 C -0.015 4.015 11 C 0.027 3.973 12 N -0.335 5.335 13 C -0.351 4.351 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.565 5.565 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.013 4.013 22 C 0.328 3.672 23 O -0.416 6.416 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.184 0.816 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.256 0.744 31 H 0.125 0.875 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.172 23.648 5.485 25.950 hybrid contribution -0.374 -0.797 -0.221 0.908 sum -9.545 22.850 5.264 25.317 Atomic orbital electron populations 1.22238 0.76580 1.04067 1.05185 1.45380 1.09607 1.06743 1.58635 1.22211 0.94242 0.89291 0.92187 1.20698 0.92316 0.99761 1.13282 1.22044 1.01828 0.90264 0.83143 1.21246 0.92054 0.96198 1.17461 1.17435 0.86752 0.83187 0.77139 1.90777 1.13521 1.87513 1.51639 1.46644 1.12310 1.05630 1.71340 1.23795 0.96536 0.80392 1.00729 1.22744 1.00315 0.82703 0.91579 1.45760 1.71873 1.02973 1.12871 1.19001 1.31640 0.80935 1.03492 0.90148 1.24825 1.01064 0.98156 0.96343 1.69853 1.46017 1.34130 1.06461 0.86087 0.77787 0.84342 0.77451 1.21740 1.21587 1.20532 1.22857 0.95904 0.88601 0.93983 1.17089 0.88307 0.82820 0.78969 1.90676 1.68950 1.28988 1.53009 0.89200 0.89607 0.89640 0.81594 0.82926 0.83182 0.74362 0.87466 0.95517 0.90356 0.93646 0.93315 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.04 59.85 0.60 0.92 16 2 N -0.49 -4.14 2.98 -126.77 -0.38 -4.52 16 3 C 0.15 0.76 10.28 -16.85 -0.17 0.59 16 4 C -0.24 -1.47 9.99 -40.01 -0.40 -1.87 16 5 C 0.05 0.53 9.70 -38.71 -0.38 0.16 16 6 C -0.26 -3.82 5.92 -104.50 -0.62 -4.44 16 7 C 0.57 10.96 7.73 -12.67 -0.10 10.86 16 8 O -0.55 -12.16 16.07 5.23 0.08 -12.08 16 9 N -0.70 -14.13 5.28 -56.54 -0.30 -14.42 16 10 C 0.09 2.07 4.37 -70.16 -0.31 1.76 16 11 C 0.15 4.10 7.40 -2.84 -0.02 4.08 16 12 N -0.61 -17.06 3.70 -177.92 -0.66 -17.72 16 13 C -0.22 -6.66 10.70 -15.06 -0.16 -6.82 16 14 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 16 N -0.92 -28.92 11.36 55.49 0.63 -28.29 16 17 Si 0.91 23.14 29.56 -169.99 -5.02 18.11 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.11 2.60 8.69 -2.98 -0.03 2.57 16 22 C 0.53 7.09 7.44 -14.92 -0.11 6.98 16 23 O -0.53 -8.80 13.70 5.02 0.07 -8.73 16 24 H 0.09 0.11 7.70 -51.93 -0.40 -0.29 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.17 0.05 7.79 -52.49 -0.41 -0.36 16 28 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.15 1.54 7.71 -52.49 -0.40 1.13 16 30 H 0.41 8.06 5.32 -40.82 -0.22 7.84 16 31 H 0.11 2.54 7.57 -51.93 -0.39 2.15 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 2.32 7.07 -51.93 -0.37 1.96 16 34 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -38.69 309.74 -6.96 -45.65 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.27 Total: 2.85 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -1.78 Total: 14.48 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.70 Total: -64.95 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.15 Total: -20.81 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -38.69 -6.96 -45.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031275661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.963 kcal (2) G-P(sol) polarization free energy of solvation -38.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds