Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35648 * 116.99953 * 2 1 4 4 C 1.39345 * 120.53990 * 359.97438 * 3 2 1 5 5 C 1.38299 * 118.43839 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44448 * 359.97438 * 5 4 3 7 7 N 1.31370 * 121.06946 * 359.97438 * 6 5 4 8 8 C 1.32862 * 121.69556 * 0.02562 * 7 6 5 9 9 C 1.47829 * 119.78422 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00085 * 180.02562 * 9 8 7 11 11 N 1.34782 * 120.00059 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00124 * 179.97438 * 11 9 8 13 13 C 1.53946 * 113.74544 * 253.74002 * 12 11 9 14 14 N 1.47812 * 86.03697 * 222.08432 * 13 12 11 15 15 C 1.36934 * 134.45557 * 204.64621 * 14 13 12 16 16 H 1.07998 * 120.00210 * 179.86751 * 15 14 13 17 17 C 1.38814 * 119.99906 * 359.85973 * 15 14 13 18 18 N 1.31616 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47388 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47213 * 120.00507 * 19 17 15 22 22 H 1.48500 * 109.47322 * 240.00108 * 19 17 15 23 23 C 1.47578 * 91.05159 * 24.54801 * 14 13 12 24 24 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46949 * 300.00245 * 1 2 3 26 26 H 1.08995 * 109.46979 * 60.00328 * 1 2 3 27 27 H 1.07995 * 120.78114 * 359.95867 * 4 3 2 28 28 H 1.07999 * 120.28076 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.46417 * 179.72630 * 6 5 4 30 30 H 0.96999 * 119.99563 * 359.97438 * 11 9 8 31 31 H 1.09005 * 112.94327 * 25.33644 * 12 11 9 32 32 H 1.08995 * 113.76365 * 336.34975 * 13 12 11 33 33 H 1.09000 * 113.76755 * 107.74430 * 13 12 11 34 34 H 0.97009 * 120.00115 * 179.97438 * 18 17 15 35 35 H 1.09000 * 113.76771 * 221.15359 * 23 14 13 36 36 H 1.09002 * 113.77216 * 89.75643 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9696 3.5928 0.0000 6 6 3.3572 3.6011 0.0016 7 7 4.0419 2.4799 0.0032 8 6 3.4410 1.2950 0.0027 9 6 4.2531 0.0598 0.0039 10 8 3.7074 -1.0264 0.0030 11 7 5.5987 0.1379 0.0059 12 6 6.4035 -1.0862 0.0076 13 6 7.0716 -1.3868 1.3616 14 7 8.2684 -1.7507 0.5740 15 6 9.3502 -2.5613 0.7925 16 1 10.1116 -2.6620 0.0333 17 6 9.4682 -3.2535 1.9899 18 7 8.5401 -3.1311 2.9151 19 14 10.9444 -4.3587 2.2883 20 1 11.8371 -4.3232 1.1022 21 1 11.6879 -3.8803 3.4814 22 1 10.4819 -5.7509 2.5188 23 6 7.8281 -0.8921 -0.5426 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2175 2.3527 -0.0016 28 1 1.4195 4.5222 -0.0008 29 1 3.8828 4.5446 -0.0024 30 1 6.0341 1.0047 0.0063 31 1 5.8795 -1.9398 -0.4224 32 1 7.2095 -0.5060 1.9886 33 1 6.6242 -2.2250 1.8957 34 1 8.6224 -3.6151 3.7518 35 1 7.9836 -1.3360 -1.5259 36 1 8.1887 0.1344 -0.4761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031309529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = 30.937544 kcal Electronic energy + Delta-G solvation = -20878.458462 eV Core-core repulsion = 17558.641329 eV Total energy + Delta-G solvation = -3319.817132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99423 -39.03450 -38.29881 -37.27068 -33.45283 -32.51968 -31.60379 -30.91903 -27.75788 -27.33921 -24.93786 -24.72585 -23.13489 -22.73641 -20.53468 -19.53385 -18.37627 -17.59709 -17.13469 -16.68690 -16.12338 -15.55511 -15.29064 -14.90384 -14.59633 -14.49209 -13.97683 -13.75451 -13.59232 -13.38354 -12.73729 -12.56279 -11.81249 -11.70727 -11.69708 -11.36702 -11.34845 -10.83972 -10.72620 -10.34780 -10.12615 -10.05831 -9.96507 -9.49847 -9.39181 -8.75244 -8.66398 -8.24548 -6.84849 -5.71216 -3.04898 0.54296 1.01292 2.94636 2.96880 3.42126 3.45831 3.50207 3.51525 3.86844 4.18072 4.34879 4.46854 4.55904 4.75435 4.85273 4.89103 4.96733 5.20585 5.26294 5.36471 5.54694 5.67462 5.69193 5.69857 6.09330 6.14131 6.31743 6.52436 6.65558 6.89475 7.00584 7.31961 7.44784 7.57703 7.65558 8.02252 8.07968 8.67631 9.08840 9.75146 10.62861 11.45632 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.003633 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.841987 B = 7704.728098 C = 8153.453666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.112 4.112 6 C 0.056 3.944 7 N -0.419 5.419 8 C 0.051 3.949 9 C 0.566 3.434 10 O -0.519 6.519 11 N -0.697 5.697 12 C 0.091 3.909 13 C 0.155 3.845 14 N -0.608 5.608 15 C -0.223 4.223 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.113 3.887 24 H 0.106 0.894 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.405 0.595 31 H 0.111 0.889 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.472 14.980 -6.726 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.179 6.179 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.133 4.133 6 C -0.105 4.105 7 N -0.131 5.131 8 C -0.088 4.088 9 C 0.350 3.650 10 O -0.394 6.394 11 N -0.348 5.348 12 C -0.014 4.014 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.351 4.351 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.014 4.014 24 H 0.124 0.876 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.181 0.819 30 H 0.240 0.760 31 H 0.129 0.871 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.647 13.691 -6.546 22.526 hybrid contribution -0.207 0.273 0.363 0.499 sum -16.854 13.964 -6.183 22.744 Atomic orbital electron populations 1.23217 0.78701 1.04732 1.01003 1.86467 1.20745 1.24425 1.86257 1.20094 0.92443 0.85766 0.93322 1.21736 1.00998 0.91871 1.05804 1.22174 0.95810 0.98315 0.96953 1.22702 0.91346 0.96442 0.99962 1.67650 1.39927 0.97411 1.08112 1.20936 0.88687 0.93122 1.06057 1.17612 0.82679 0.86975 0.77777 1.90831 1.71703 1.27448 1.49404 1.45961 1.05210 1.10786 1.72821 1.23926 0.89776 0.86558 1.01093 1.22714 0.84874 0.98096 0.91488 1.45730 1.23961 1.49005 1.14750 1.19037 0.97953 1.17678 1.00417 0.90004 1.24816 0.98707 1.00588 0.96300 1.69850 1.34083 1.45352 1.07224 0.86023 0.81710 0.80181 0.77692 1.20425 1.21765 1.21657 1.22870 0.90330 0.94708 0.93458 0.87592 0.92569 0.92632 0.83781 0.84120 0.81853 0.75978 0.87118 0.95274 0.90490 0.93636 0.93221 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.78 8.56 -40.59 -0.35 -4.13 16 3 C 0.13 1.79 6.71 -38.56 -0.26 1.53 16 4 C -0.18 -1.62 9.13 -39.15 -0.36 -1.97 16 5 C -0.11 -0.87 10.10 -39.36 -0.40 -1.26 16 6 C 0.06 0.53 11.17 -17.55 -0.20 0.33 16 7 N -0.42 -5.56 9.54 -9.71 -0.09 -5.65 16 8 C 0.05 0.79 6.76 -82.88 -0.56 0.23 16 9 C 0.57 10.55 7.80 -12.33 -0.10 10.46 16 10 O -0.52 -11.29 14.76 -16.63 -0.25 -11.54 16 11 N -0.70 -12.59 5.36 -56.29 -0.30 -12.90 16 12 C 0.09 1.92 4.40 -70.15 -0.31 1.61 16 13 C 0.15 3.91 7.33 -2.84 -0.02 3.89 16 14 N -0.61 -16.25 3.70 -177.88 -0.66 -16.91 16 15 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 16 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -28.22 11.39 55.49 0.63 -27.59 16 19 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C 0.11 2.40 8.69 -2.97 -0.03 2.37 16 24 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.36 7.70 -51.93 -0.40 -0.04 16 26 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 27 H 0.14 0.86 6.46 -52.49 -0.34 0.52 16 28 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 29 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.40 6.52 8.04 -40.82 -0.33 6.19 16 31 H 0.11 2.48 7.51 -51.93 -0.39 2.09 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 2.19 7.16 -51.93 -0.37 1.82 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -35.90 311.66 -7.14 -43.03 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.31 Total: 1.93 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -1.49 Total: 11.42 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.42 Total: -63.04 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.59 Total: -15.67 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.90 -7.14 -43.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031309529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.970 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds