Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35648 * 116.99953 * 2 1 4 4 C 1.39345 * 120.53990 * 359.97438 * 3 2 1 5 5 C 1.38299 * 118.43839 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44448 * 359.97438 * 5 4 3 7 7 N 1.31370 * 121.06946 * 359.97438 * 6 5 4 8 8 C 1.32862 * 121.69556 * 0.02562 * 7 6 5 9 9 C 1.47829 * 119.78422 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00085 * 180.02562 * 9 8 7 11 11 N 1.34782 * 120.00059 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00124 * 179.97438 * 11 9 8 13 13 C 1.53946 * 113.74544 * 253.74002 * 12 11 9 14 14 N 1.47812 * 86.03697 * 222.08432 * 13 12 11 15 15 C 1.36934 * 134.45557 * 204.64621 * 14 13 12 16 16 H 1.07998 * 120.00210 * 179.86751 * 15 14 13 17 17 C 1.38814 * 119.99906 * 359.85973 * 15 14 13 18 18 N 1.31616 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47388 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47213 * 120.00507 * 19 17 15 22 22 H 1.48500 * 109.47322 * 240.00108 * 19 17 15 23 23 C 1.47578 * 91.05159 * 24.54801 * 14 13 12 24 24 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46949 * 300.00245 * 1 2 3 26 26 H 1.08995 * 109.46979 * 60.00328 * 1 2 3 27 27 H 1.07995 * 120.78114 * 359.95867 * 4 3 2 28 28 H 1.07999 * 120.28076 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.46417 * 179.72630 * 6 5 4 30 30 H 0.96999 * 119.99563 * 359.97438 * 11 9 8 31 31 H 1.09005 * 112.94327 * 25.33644 * 12 11 9 32 32 H 1.08995 * 113.76365 * 336.34975 * 13 12 11 33 33 H 1.09000 * 113.76755 * 107.74430 * 13 12 11 34 34 H 0.97009 * 120.00115 * 179.97438 * 18 17 15 35 35 H 1.09000 * 113.76771 * 221.15359 * 23 14 13 36 36 H 1.09002 * 113.77216 * 89.75643 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9696 3.5928 0.0000 6 6 3.3572 3.6011 0.0016 7 7 4.0419 2.4799 0.0032 8 6 3.4410 1.2950 0.0027 9 6 4.2531 0.0598 0.0039 10 8 3.7074 -1.0264 0.0030 11 7 5.5987 0.1379 0.0059 12 6 6.4035 -1.0862 0.0076 13 6 7.0716 -1.3868 1.3616 14 7 8.2684 -1.7507 0.5740 15 6 9.3502 -2.5613 0.7925 16 1 10.1116 -2.6620 0.0333 17 6 9.4682 -3.2535 1.9899 18 7 8.5401 -3.1311 2.9151 19 14 10.9444 -4.3587 2.2883 20 1 11.8371 -4.3232 1.1022 21 1 11.6879 -3.8803 3.4814 22 1 10.4819 -5.7509 2.5188 23 6 7.8281 -0.8921 -0.5426 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2175 2.3527 -0.0016 28 1 1.4195 4.5222 -0.0008 29 1 3.8828 4.5446 -0.0024 30 1 6.0341 1.0047 0.0063 31 1 5.8795 -1.9398 -0.4224 32 1 7.2095 -0.5060 1.9886 33 1 6.6242 -2.2250 1.8957 34 1 8.6224 -3.6151 3.7518 35 1 7.9836 -1.3360 -1.5259 36 1 8.1887 0.1344 -0.4761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031309529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = 4.019278 kcal Electronic energy + Delta-G solvation = -20879.625725 eV Core-core repulsion = 17558.641329 eV Total energy + Delta-G solvation = -3320.984396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93074 -40.54792 -39.18517 -38.96577 -35.13358 -33.90948 -33.08878 -31.80480 -29.47070 -28.30807 -26.64518 -26.18984 -24.57435 -23.77314 -21.90526 -21.32908 -19.32573 -18.81040 -18.64511 -18.07174 -17.10322 -17.03585 -16.89915 -16.25211 -15.85895 -15.67178 -15.34620 -15.03744 -14.67623 -14.55641 -14.28309 -13.67209 -13.41563 -13.31428 -13.22892 -12.83328 -12.65625 -12.42950 -12.38879 -12.27385 -11.90903 -11.54220 -11.24428 -10.90989 -10.80281 -10.59161 -9.98023 -9.46631 -8.99060 -7.91996 -5.28337 -0.33555 0.25920 1.45508 1.48036 1.58509 1.78536 2.09060 2.23887 2.49391 2.85609 3.19114 3.27163 3.41724 3.62917 3.79701 3.84625 4.03721 4.18348 4.29472 4.32963 4.36994 4.50688 4.53308 4.71621 4.72883 4.88071 4.93207 5.03750 5.16264 5.22163 5.45835 5.46130 5.68728 5.87310 6.24939 6.51872 6.86363 6.87449 7.26952 7.57033 8.50422 9.25285 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.003633 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.841987 B = 7704.728098 C = 8153.453666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.312 6.312 3 C 0.121 3.879 4 C -0.170 4.170 5 C -0.086 4.086 6 C 0.054 3.946 7 N -0.441 5.441 8 C 0.004 3.996 9 C 0.562 3.438 10 O -0.563 6.563 11 N -0.690 5.690 12 C 0.118 3.882 13 C 0.154 3.846 14 N -0.637 5.637 15 C -0.236 4.236 16 H 0.093 0.907 17 C -0.071 4.071 18 N -0.957 5.957 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.124 3.876 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.180 0.820 28 H 0.191 0.809 29 H 0.199 0.801 30 H 0.416 0.584 31 H 0.094 0.906 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.497 17.918 -7.896 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.070 3.930 4 C -0.196 4.196 5 C -0.105 4.105 6 C -0.109 4.109 7 N -0.153 5.153 8 C -0.132 4.132 9 C 0.348 3.652 10 O -0.441 6.441 11 N -0.341 5.341 12 C 0.012 3.988 13 C 0.027 3.973 14 N -0.364 5.364 15 C -0.364 4.364 16 H 0.110 0.890 17 C -0.263 4.263 18 N -0.606 5.606 19 Si 0.814 3.186 20 H -0.184 1.184 21 H -0.218 1.218 22 H -0.220 1.220 23 C -0.001 4.001 24 H 0.126 0.874 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.198 0.802 28 H 0.209 0.791 29 H 0.216 0.784 30 H 0.253 0.747 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.674 16.660 -7.759 25.498 hybrid contribution -0.051 -0.456 0.696 0.833 sum -17.725 16.204 -7.064 25.033 Atomic orbital electron populations 1.23519 0.76147 1.05747 1.03065 1.86404 1.23636 1.25750 1.86470 1.20319 0.92072 0.87003 0.93573 1.22180 1.02612 0.90636 1.04219 1.22756 0.95219 0.99655 0.92900 1.23452 0.92774 0.96307 0.98359 1.67543 1.41033 0.97698 1.09032 1.20359 0.89304 0.92356 1.11144 1.18253 0.82600 0.88109 0.76209 1.90785 1.72425 1.29575 1.51320 1.45728 1.05292 1.10025 1.73077 1.23243 0.90266 0.87474 0.97857 1.22562 0.85525 0.96182 0.93014 1.46053 1.23797 1.49951 1.16598 1.19517 0.98536 1.17671 1.00660 0.88952 1.25770 1.01792 1.02530 0.96251 1.70071 1.36248 1.46693 1.07560 0.84894 0.78259 0.77536 0.77902 1.18389 1.21800 1.21971 1.22991 0.89267 0.95182 0.92704 0.87378 0.90581 0.90255 0.80231 0.79145 0.78434 0.74674 0.88837 0.95961 0.94737 0.94256 0.91381 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.25 16 2 O -0.31 -8.87 8.56 -68.63 -0.59 -9.46 16 3 C 0.12 3.13 6.71 22.93 0.15 3.29 16 4 C -0.17 -2.47 9.13 22.55 0.21 -2.26 16 5 C -0.09 -0.88 10.10 22.41 0.23 -0.66 16 6 C 0.05 0.82 11.17 84.89 0.95 1.77 16 7 N -0.44 -11.14 9.54 -184.64 -1.76 -12.90 16 8 C 0.00 0.14 6.76 41.93 0.28 0.42 16 9 C 0.56 21.98 7.80 86.78 0.68 22.66 16 10 O -0.56 -26.17 14.76 17.11 0.25 -25.91 16 11 N -0.69 -25.76 5.36 -450.28 -2.41 -28.17 16 12 C 0.12 5.15 4.40 46.75 0.21 5.36 16 13 C 0.15 8.21 7.33 86.44 0.63 8.84 16 14 N -0.64 -34.78 3.70 -716.69 -2.65 -37.43 16 15 C -0.24 -13.79 10.70 84.03 0.90 -12.89 16 16 H 0.09 5.06 7.83 -2.91 -0.02 5.03 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.96 -61.21 11.39 21.65 0.25 -60.96 16 19 Si 0.99 47.35 29.55 68.60 2.03 49.38 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 C 0.12 5.22 8.69 86.49 0.75 5.97 16 24 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.08 0.80 7.70 -2.38 -0.02 0.78 16 26 H 0.08 0.77 7.70 -2.39 -0.02 0.75 16 27 H 0.18 1.23 6.46 -2.91 -0.02 1.21 16 28 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 29 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.42 13.53 8.04 -92.71 -0.75 12.79 16 31 H 0.09 4.44 7.51 -2.38 -0.02 4.42 16 32 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 2.10 7.16 -2.39 -0.02 2.09 16 34 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.06 2.39 8.11 -2.39 -0.02 2.37 16 Total: -1.00 -83.94 311.66 2.04 -81.89 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.37 Total: 13.57 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 6.57 Total: 30.00 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -6.58 Total: -139.47 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.33 Total: -35.37 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -83.94 2.04 -81.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031309529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.912 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds