Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99956 * 2 1 4 4 O 1.21536 * 120.00198 * 184.34730 * 3 2 1 5 5 C 1.47984 * 119.99858 * 4.35364 * 3 2 1 6 6 C 1.39915 * 120.91518 * 149.99582 * 5 3 2 7 7 C 1.38007 * 119.01318 * 180.02562 * 6 5 3 8 8 N 1.31988 * 120.89065 * 0.02562 * 7 6 5 9 9 O 1.41602 * 118.98871 * 179.97438 * 8 7 6 10 10 C 1.31993 * 122.02309 * 0.24167 * 8 7 6 11 11 C 1.38008 * 120.89175 * 359.48701 * 10 8 7 12 12 C 1.46496 * 120.00120 * 180.02562 * 2 1 3 13 13 C 1.53943 * 113.74314 * 38.73864 * 12 2 1 14 14 N 1.47818 * 86.03947 * 222.08492 * 13 12 2 15 15 C 1.36933 * 134.45604 * 204.64409 * 14 13 12 16 16 H 1.07997 * 119.99456 * 179.86881 * 15 14 13 17 17 C 1.38807 * 120.00048 * 359.86954 * 15 14 13 18 18 N 1.31613 * 120.00152 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99565 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46869 * 60.00033 * 19 17 15 21 21 H 1.48501 * 109.46900 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47169 * 299.99862 * 19 17 15 23 23 C 1.47577 * 91.04600 * 24.54927 * 14 13 12 24 24 H 1.09001 * 109.46431 * 92.55034 * 1 2 3 25 25 H 1.09000 * 109.46779 * 212.54752 * 1 2 3 26 26 H 1.08990 * 109.46888 * 332.55320 * 1 2 3 27 27 H 1.08004 * 120.49321 * 0.04759 * 6 5 3 28 28 H 1.07999 * 119.55647 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.55203 * 179.71516 * 10 8 7 30 30 H 1.08005 * 120.49882 * 180.25666 * 11 10 8 31 31 H 1.09004 * 112.94373 * 170.33417 * 12 2 1 32 32 H 1.08997 * 113.77007 * 336.34951 * 13 12 2 33 33 H 1.09008 * 113.76603 * 107.74735 * 13 12 2 34 34 H 0.97009 * 119.99932 * 180.02562 * 18 17 15 35 35 H 1.09003 * 113.76919 * 221.14847 * 23 14 13 36 36 H 1.09003 * 113.77000 * 89.75911 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1688 -0.0798 5 6 1.4022 2.4469 0.0973 6 6 1.9827 3.5663 0.7036 7 6 1.2600 4.7399 0.7734 8 7 0.0386 4.8141 0.2787 9 8 -0.6668 6.0383 0.3727 10 6 -0.5475 3.7807 -0.2965 11 6 0.1055 2.5705 -0.4137 12 6 2.1976 -1.2687 -0.0006 13 6 1.5556 -2.3547 -0.8828 14 7 1.8611 -3.2880 0.2219 15 6 2.0640 -4.6396 0.3071 16 1 2.2809 -5.0938 1.2626 17 6 1.9907 -5.4257 -0.8346 18 7 1.7258 -4.8722 -1.9989 19 14 2.2682 -7.2694 -0.7183 20 1 1.2585 -7.8654 0.1931 21 1 2.1357 -7.8759 -2.0673 22 1 3.6301 -7.5326 -0.1883 23 6 1.8621 -2.1786 1.1950 24 1 -0.3632 -0.0457 -1.0267 25 1 -0.3633 -0.8663 0.5529 26 1 -0.3633 0.9119 0.4736 27 1 2.9817 3.5128 1.1106 28 1 1.6997 5.6095 1.2392 29 1 -1.5503 3.8846 -0.6838 30 1 -0.3785 1.7303 -0.8892 31 1 3.2670 -1.1418 -0.1691 32 1 0.4888 -2.2090 -1.0525 33 1 2.1092 -2.5603 -1.7991 34 1 1.6743 -5.4217 -2.7967 35 1 2.6600 -2.2439 1.9349 36 1 0.8856 -1.9811 1.6371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042441755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = 114.274441 kcal Electronic energy + Delta-G solvation = -21002.424325 eV Core-core repulsion = 17686.220952 eV Total energy + Delta-G solvation = -3316.203373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.80867 -39.95561 -37.86586 -35.43784 -34.34729 -32.40090 -31.97150 -30.23846 -27.95041 -27.32672 -25.37226 -25.00910 -24.58459 -23.09897 -20.75467 -19.03017 -18.17895 -17.90327 -17.17238 -16.98497 -16.24952 -15.93619 -15.72195 -15.30289 -14.88413 -14.59443 -14.26767 -13.93479 -13.43928 -13.00211 -12.72360 -12.61949 -12.12754 -11.86074 -11.74225 -11.48296 -11.27711 -10.99188 -10.82799 -10.47253 -10.23666 -10.07252 -9.96798 -9.70185 -9.61724 -8.93372 -8.88452 -8.47400 -7.06370 -5.91304 -3.24868 -0.09712 0.21175 2.23693 2.31973 2.74865 3.02669 3.32419 3.36821 3.37773 3.89201 4.08716 4.11605 4.15045 4.35588 4.42953 4.84843 4.97651 5.02180 5.04392 5.17657 5.30651 5.34196 5.37127 5.46318 5.57750 5.86670 5.91772 6.23136 6.37930 6.39281 6.47477 6.74941 7.00890 7.10056 7.31392 7.41560 7.82075 7.96158 8.89479 9.55886 10.39920 11.25696 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.049883 B = 0.003428 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.180707 B = 8164.986131 C = 8399.451721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.584 5.584 3 C 0.552 3.448 4 O -0.525 6.525 5 C -0.083 4.083 6 C -0.069 4.069 7 C 0.068 3.932 8 N -0.109 5.109 9 O -0.546 6.546 10 C 0.068 3.932 11 C -0.108 4.108 12 C 0.088 3.912 13 C 0.157 3.843 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.082 0.918 17 C -0.004 4.004 18 N -0.920 5.920 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.109 3.891 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.173 0.827 28 H 0.188 0.812 29 H 0.188 0.812 30 H 0.186 0.814 31 H 0.120 0.880 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.256 0.744 35 H 0.049 0.951 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 12.896 3.716 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.316 5.316 3 C 0.339 3.661 4 O -0.402 6.402 5 C -0.094 4.094 6 C -0.088 4.088 7 C -0.077 4.077 8 N 0.213 4.787 9 O -0.602 6.602 10 C -0.078 4.078 11 C -0.126 4.126 12 C -0.015 4.015 13 C 0.031 3.969 14 N -0.331 5.331 15 C -0.355 4.355 16 H 0.100 0.900 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.209 1.209 23 C -0.018 4.018 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.191 0.809 28 H 0.205 0.795 29 H 0.205 0.795 30 H 0.202 0.798 31 H 0.138 0.862 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.444 12.874 3.561 13.579 hybrid contribution -0.220 -0.909 0.032 0.936 sum -2.665 11.965 3.592 12.774 Atomic orbital electron populations 1.22522 0.80040 1.03991 1.02418 1.48005 1.07049 1.06092 1.70417 1.17996 0.87112 0.83005 0.78037 1.90824 1.13037 1.86767 1.49615 1.20744 0.94534 0.95822 0.98343 1.21937 1.01341 0.89546 0.95972 1.22644 0.85599 1.00672 0.98830 1.43345 1.07706 1.11264 1.16382 1.97671 1.66332 1.05871 1.90368 1.22681 1.01647 0.85865 0.97557 1.22832 0.93784 0.97944 0.98055 1.24277 0.98232 0.78982 1.00015 1.22682 0.96949 0.83246 0.94003 1.45668 1.81960 1.02218 1.03228 1.18940 1.42072 0.80065 0.94407 0.89990 1.24805 1.01599 0.98391 0.95306 1.69786 1.54181 1.34590 0.98083 0.86154 0.78174 0.84386 0.76763 1.21072 1.21450 1.20915 1.22973 0.98248 0.87183 0.93427 0.91211 0.89612 0.90261 0.80929 0.79534 0.79504 0.79761 0.86190 0.94899 0.90262 0.93372 0.93254 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 7.35 59.85 0.44 0.93 16 2 N -0.58 -7.69 3.09 -176.80 -0.55 -8.24 16 3 C 0.55 7.16 7.49 -12.26 -0.09 7.07 16 4 O -0.53 -8.69 16.27 5.33 0.09 -8.61 16 5 C -0.08 -0.78 5.53 -104.65 -0.58 -1.35 16 6 C -0.07 -0.55 9.70 -39.04 -0.38 -0.93 16 7 C 0.07 0.60 10.67 -17.57 -0.19 0.41 16 8 N -0.11 -1.29 3.58 -13.30 -0.05 -1.34 16 9 O -0.55 -9.93 20.04 -11.47 -0.23 -10.16 16 10 C 0.07 0.57 10.67 -17.57 -0.19 0.38 16 11 C -0.11 -0.77 7.58 -39.04 -0.30 -1.06 16 12 C 0.09 1.53 4.41 -70.14 -0.31 1.22 16 13 C 0.16 3.33 6.99 -2.84 -0.02 3.31 16 14 N -0.60 -14.39 3.70 -177.85 -0.66 -15.05 16 15 C -0.23 -6.05 10.70 -15.06 -0.16 -6.22 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 18 N -0.92 -25.87 11.39 55.49 0.63 -25.24 16 19 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.02 8.47 -2.97 -0.03 2.00 16 24 H 0.07 0.56 7.37 -51.93 -0.38 0.17 16 25 H 0.09 0.91 6.46 -51.93 -0.34 0.57 16 26 H 0.08 0.52 4.77 -51.93 -0.25 0.27 16 27 H 0.17 1.12 7.99 -52.48 -0.42 0.70 16 28 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.19 0.91 4.70 -52.48 -0.25 0.66 16 31 H 0.12 2.30 7.20 -51.93 -0.37 1.93 16 32 H 0.03 0.67 6.87 -51.93 -0.36 0.31 16 33 H 0.08 1.92 7.17 -51.92 -0.37 1.55 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.62 6.81 -51.93 -0.35 0.27 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -36.99 303.77 -7.00 -43.99 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.90 Total: -1.67 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.89 Total: 5.55 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.62 Total: -49.86 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.14 Total: -18.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.99 -7.00 -43.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042441755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.265 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds