Wall clock time and date at job start Mon Mar 30 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99956 * 2 1 4 4 O 1.21536 * 120.00198 * 184.34730 * 3 2 1 5 5 C 1.47984 * 119.99858 * 4.35364 * 3 2 1 6 6 C 1.39915 * 120.91518 * 149.99582 * 5 3 2 7 7 C 1.38007 * 119.01318 * 180.02562 * 6 5 3 8 8 N 1.31988 * 120.89065 * 0.02562 * 7 6 5 9 9 O 1.41602 * 118.98871 * 179.97438 * 8 7 6 10 10 C 1.31993 * 122.02309 * 0.24167 * 8 7 6 11 11 C 1.38008 * 120.89175 * 359.48701 * 10 8 7 12 12 C 1.46496 * 120.00120 * 180.02562 * 2 1 3 13 13 C 1.53943 * 113.74314 * 38.73864 * 12 2 1 14 14 N 1.47818 * 86.03947 * 222.08492 * 13 12 2 15 15 C 1.36933 * 134.45604 * 204.64409 * 14 13 12 16 16 H 1.07997 * 119.99456 * 179.86881 * 15 14 13 17 17 C 1.38807 * 120.00048 * 359.86954 * 15 14 13 18 18 N 1.31613 * 120.00152 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99565 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46869 * 60.00033 * 19 17 15 21 21 H 1.48501 * 109.46900 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47169 * 299.99862 * 19 17 15 23 23 C 1.47577 * 91.04600 * 24.54927 * 14 13 12 24 24 H 1.09001 * 109.46431 * 92.55034 * 1 2 3 25 25 H 1.09000 * 109.46779 * 212.54752 * 1 2 3 26 26 H 1.08990 * 109.46888 * 332.55320 * 1 2 3 27 27 H 1.08004 * 120.49321 * 0.04759 * 6 5 3 28 28 H 1.07999 * 119.55647 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.55203 * 179.71516 * 10 8 7 30 30 H 1.08005 * 120.49882 * 180.25666 * 11 10 8 31 31 H 1.09004 * 112.94373 * 170.33417 * 12 2 1 32 32 H 1.08997 * 113.77007 * 336.34951 * 13 12 2 33 33 H 1.09008 * 113.76603 * 107.74735 * 13 12 2 34 34 H 0.97009 * 119.99932 * 180.02562 * 18 17 15 35 35 H 1.09003 * 113.76919 * 221.14847 * 23 14 13 36 36 H 1.09003 * 113.77000 * 89.75911 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1688 -0.0798 5 6 1.4022 2.4469 0.0973 6 6 1.9827 3.5663 0.7036 7 6 1.2600 4.7399 0.7734 8 7 0.0386 4.8141 0.2787 9 8 -0.6668 6.0383 0.3727 10 6 -0.5475 3.7807 -0.2965 11 6 0.1055 2.5705 -0.4137 12 6 2.1976 -1.2687 -0.0006 13 6 1.5556 -2.3547 -0.8828 14 7 1.8611 -3.2880 0.2219 15 6 2.0640 -4.6396 0.3071 16 1 2.2809 -5.0938 1.2626 17 6 1.9907 -5.4257 -0.8346 18 7 1.7258 -4.8722 -1.9989 19 14 2.2682 -7.2694 -0.7183 20 1 1.2585 -7.8654 0.1931 21 1 2.1357 -7.8759 -2.0673 22 1 3.6301 -7.5326 -0.1883 23 6 1.8621 -2.1786 1.1950 24 1 -0.3632 -0.0457 -1.0267 25 1 -0.3633 -0.8663 0.5529 26 1 -0.3633 0.9119 0.4736 27 1 2.9817 3.5128 1.1106 28 1 1.6997 5.6095 1.2392 29 1 -1.5503 3.8846 -0.6838 30 1 -0.3785 1.7303 -0.8892 31 1 3.2670 -1.1418 -0.1691 32 1 0.4888 -2.2090 -1.0525 33 1 2.1092 -2.5603 -1.7991 34 1 1.6743 -5.4217 -2.7967 35 1 2.6600 -2.2439 1.9349 36 1 0.8856 -1.9811 1.6371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042441755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:08 Heat of formation + Delta-G solvation = 87.806824 kcal Electronic energy + Delta-G solvation = -21003.572047 eV Core-core repulsion = 17686.220952 eV Total energy + Delta-G solvation = -3317.351095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.61994 -41.10313 -39.29914 -36.50249 -35.40382 -34.00516 -32.94708 -31.31278 -29.58590 -28.32028 -26.62055 -26.51333 -25.29454 -24.57446 -21.95784 -20.37558 -19.14075 -18.81743 -18.62833 -17.99938 -17.43457 -17.01560 -16.68816 -16.50955 -16.18379 -15.72745 -15.47398 -15.14055 -14.68919 -14.08949 -13.79409 -13.61711 -13.38393 -13.26624 -13.17869 -12.80375 -12.70490 -12.57549 -12.20626 -12.00262 -11.97978 -11.54448 -11.14644 -10.86557 -10.76340 -10.68723 -10.02130 -9.66978 -8.95082 -7.92829 -5.26114 -0.88695 -0.42577 1.40343 1.46885 1.47589 1.50071 1.56146 1.70004 2.19822 2.48257 3.00321 3.27756 3.39081 3.42476 3.45385 3.52623 3.77453 3.81025 4.11383 4.23298 4.31720 4.42720 4.47053 4.59808 4.62718 4.71225 4.73860 4.86028 4.93402 5.14150 5.22052 5.48863 5.62835 5.71886 5.79838 5.90349 6.26554 6.89129 6.90332 7.58311 8.50280 9.23677 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.049883 B = 0.003428 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.180707 B = 8164.986131 C = 8399.451721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.584 5.584 3 C 0.556 3.444 4 O -0.565 6.565 5 C -0.083 4.083 6 C -0.056 4.056 7 C 0.077 3.923 8 N -0.132 5.132 9 O -0.615 6.615 10 C 0.079 3.921 11 C -0.087 4.087 12 C 0.116 3.884 13 C 0.160 3.840 14 N -0.637 5.637 15 C -0.237 4.237 16 H 0.085 0.915 17 C -0.061 4.061 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.114 3.886 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.190 0.810 28 H 0.204 0.796 29 H 0.210 0.790 30 H 0.214 0.786 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.250 0.750 35 H 0.052 0.948 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 13.167 4.526 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.314 5.314 3 C 0.344 3.656 4 O -0.444 6.444 5 C -0.094 4.094 6 C -0.076 4.076 7 C -0.068 4.068 8 N 0.187 4.813 9 O -0.668 6.668 10 C -0.066 4.066 11 C -0.105 4.105 12 C 0.011 3.989 13 C 0.034 3.966 14 N -0.365 5.365 15 C -0.365 4.365 16 H 0.103 0.897 17 C -0.255 4.255 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.205 1.205 23 C -0.011 4.011 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.207 0.793 28 H 0.221 0.779 29 H 0.226 0.774 30 H 0.230 0.770 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.290 13.207 4.407 14.307 hybrid contribution 0.094 -1.034 -0.193 1.056 sum -3.196 12.173 4.214 13.272 Atomic orbital electron populations 1.22878 0.77316 1.05519 1.04132 1.47880 1.08562 1.04664 1.70328 1.18348 0.86703 0.83734 0.76789 1.90819 1.14985 1.87381 1.51234 1.20523 0.95217 0.94257 0.99386 1.22057 1.01738 0.88546 0.95211 1.22963 0.84704 1.01462 0.97653 1.43451 1.08597 1.10753 1.18479 1.97644 1.67695 1.08743 1.92749 1.23136 1.02541 0.85074 0.95825 1.23029 0.92544 0.98069 0.96847 1.23424 0.97121 0.80410 0.97903 1.22578 0.97191 0.84331 0.92547 1.45980 1.82375 1.02358 1.05742 1.19310 1.40838 0.81833 0.94499 0.89736 1.25579 1.02380 1.02352 0.95168 1.69960 1.55908 1.35542 0.98397 0.85172 0.78204 0.79729 0.76331 1.20191 1.22077 1.20484 1.23100 0.99533 0.85319 0.93191 0.89212 0.90361 0.86745 0.79314 0.77885 0.77366 0.76963 0.88304 0.93721 0.94189 0.94125 0.92976 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 7.35 127.77 0.94 1.57 16 2 N -0.58 -13.91 3.09 -831.55 -2.57 -16.48 16 3 C 0.56 13.06 7.49 86.83 0.65 13.71 16 4 O -0.56 -17.98 16.27 -3.83 -0.06 -18.04 16 5 C -0.08 -1.26 5.53 -19.88 -0.11 -1.37 16 6 C -0.06 -0.74 9.70 22.62 0.22 -0.52 16 7 C 0.08 1.18 10.67 84.61 0.90 2.08 16 8 N -0.13 -2.89 3.58 -195.99 -0.70 -3.59 16 9 O -0.61 -22.31 20.04 -38.79 -0.78 -23.09 16 10 C 0.08 1.08 10.67 84.61 0.90 1.98 16 11 C -0.09 -0.87 7.58 22.62 0.17 -0.70 16 12 C 0.12 3.94 4.41 46.74 0.21 4.14 16 13 C 0.16 6.74 6.99 86.44 0.60 7.35 16 14 N -0.64 -30.24 3.70 -716.59 -2.65 -32.90 16 15 C -0.24 -12.60 10.70 84.03 0.90 -11.70 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 18 N -0.95 -54.42 11.39 21.65 0.25 -54.17 16 19 Si 0.98 43.81 29.55 68.60 2.03 45.83 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.11 4.09 8.47 86.49 0.73 4.82 16 24 H 0.09 1.04 7.37 -2.39 -0.02 1.02 16 25 H 0.08 1.36 6.46 -2.39 -0.02 1.35 16 26 H 0.11 0.90 4.77 -2.39 -0.01 0.89 16 27 H 0.19 1.90 7.99 -2.91 -0.02 1.87 16 28 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.21 0.97 4.70 -2.91 -0.01 0.96 16 31 H 0.10 3.82 7.20 -2.39 -0.02 3.80 16 32 H 0.05 1.77 6.87 -2.39 -0.02 1.75 16 33 H 0.04 2.00 7.17 -2.38 -0.02 1.98 16 34 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.96 6.81 -2.39 -0.02 1.95 16 Total: -1.00 -83.38 303.77 3.21 -80.17 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.11 Total: 3.76 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.59 Total: 18.50 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -5.68 Total: -107.14 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.84 Total: -41.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -83.38 3.21 -80.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042441755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.976 kcal (2) G-P(sol) polarization free energy of solvation -83.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds