Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99937 * 2 1 4 4 O 1.21511 * 120.00127 * 176.36491 * 3 2 1 5 5 C 1.48165 * 119.99736 * 356.36328 * 3 2 1 6 6 C 1.39965 * 120.89566 * 215.34555 * 5 3 2 7 7 C 1.37977 * 119.13956 * 179.75454 * 6 5 3 8 8 N 1.31912 * 120.96983 * 0.52999 * 7 6 5 9 9 C 1.32167 * 121.97499 * 359.72207 * 8 7 6 10 10 O 1.35685 * 119.62496 * 179.97438 * 9 8 7 11 11 C 1.38899 * 120.75519 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00432 * 180.02562 * 2 1 3 13 13 C 1.53493 * 114.20467 * 299.99427 * 12 2 1 14 14 N 1.47071 * 87.98544 * 87.71656 * 13 12 2 15 15 C 1.36932 * 136.06045 * 207.08348 * 14 13 12 16 16 H 1.07998 * 119.99797 * 5.06928 * 15 14 13 17 17 C 1.38813 * 120.00078 * 185.06146 * 15 14 13 18 18 N 1.31615 * 119.99898 * 5.05322 * 17 15 14 19 19 Si 1.86801 * 119.99969 * 185.04941 * 17 15 14 20 20 H 1.48499 * 109.47305 * 265.00136 * 19 17 15 21 21 H 1.48505 * 109.47117 * 25.00497 * 19 17 15 22 22 H 1.48500 * 109.46954 * 145.00185 * 19 17 15 23 23 C 1.47075 * 87.88142 * 27.34124 * 14 13 12 24 24 H 1.09002 * 109.46999 * 275.25946 * 1 2 3 25 25 H 1.08998 * 109.47607 * 35.25675 * 1 2 3 26 26 H 1.08999 * 109.46676 * 155.26202 * 1 2 3 27 27 H 1.08007 * 120.42627 * 359.97438 * 6 5 3 28 28 H 1.07998 * 119.51385 * 180.27540 * 7 6 5 29 29 H 0.96704 * 113.99732 * 270.02574 * 10 9 8 30 30 H 1.07990 * 120.52549 * 179.97438 * 11 9 8 31 31 H 1.09000 * 113.28251 * 166.93166 * 12 2 1 32 32 H 1.09006 * 113.46933 * 332.93861 * 13 12 2 33 33 H 1.08997 * 113.47093 * 202.49779 * 13 12 2 34 34 H 0.97005 * 120.00101 * 179.97438 * 18 17 15 35 35 H 1.09002 * 113.46383 * 87.44345 * 23 14 13 36 36 H 1.09000 * 113.46237 * 217.87786 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3522 1.1684 0.0667 5 6 1.4002 2.4491 -0.0814 6 6 1.9276 3.5392 -0.7832 7 6 1.2065 4.7142 -0.8400 8 7 0.0391 4.8240 -0.2358 9 6 -0.4950 3.8231 0.4422 10 8 -1.6989 3.9887 1.0458 11 6 0.1625 2.6038 0.5448 12 6 2.1976 -1.2687 -0.0006 13 6 1.9062 -2.1642 1.2115 14 7 0.7774 -2.7295 0.4570 15 6 -0.4239 -3.3093 0.7666 16 1 -0.7514 -3.3569 1.7947 17 6 -1.2206 -3.8357 -0.2408 18 7 -0.7789 -3.8675 -1.4802 19 14 -2.9197 -4.4989 0.1626 20 1 -2.8399 -5.9658 0.3793 21 1 -3.4273 -3.8433 1.3946 22 1 -3.8427 -4.2147 -0.9655 23 6 1.5096 -2.4039 -0.7763 24 1 -0.3633 0.0942 1.0234 25 1 -0.3634 0.8391 -0.5932 26 1 -0.3632 -0.9334 -0.4301 27 1 2.8850 3.4604 -1.2770 28 1 1.6057 5.5577 -1.3836 29 1 -1.6418 4.3169 1.9537 30 1 -0.2772 1.7886 1.1000 31 1 3.2576 -1.1539 -0.2269 32 1 1.6008 -1.6086 2.0983 33 1 2.6959 -2.8866 1.4174 34 1 -1.3356 -4.2357 -2.1842 35 1 2.1947 -3.1897 -1.0945 36 1 0.8662 -2.0527 -1.5830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042607011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = 49.044734 kcal Electronic energy + Delta-G solvation = -21589.879606 eV Core-core repulsion = 18270.847660 eV Total energy + Delta-G solvation = -3319.031946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93395 -39.60506 -37.90716 -37.00846 -34.52115 -32.71673 -31.93999 -30.41393 -28.02594 -26.58442 -24.97744 -24.70994 -23.56621 -22.89161 -20.85213 -18.97449 -18.20117 -17.28416 -16.93281 -16.66975 -16.16343 -15.69948 -15.35952 -15.01191 -14.83087 -14.07476 -13.82959 -13.79824 -13.33025 -12.80975 -12.75275 -12.59614 -12.15110 -11.92285 -11.75858 -11.39978 -11.02936 -10.94104 -10.72531 -10.21432 -10.20710 -10.00186 -9.90350 -9.53082 -9.44478 -9.09257 -8.88925 -8.16177 -7.01558 -5.90294 -3.22451 0.66002 0.82379 2.81168 3.15190 3.30269 3.31859 3.37719 3.39652 3.71063 4.35126 4.38215 4.58286 4.83099 4.83785 5.13459 5.21342 5.34450 5.36837 5.42683 5.58622 5.65798 5.87681 6.00753 6.01604 6.09376 6.25180 6.37459 6.44087 6.58637 6.82473 7.03932 7.13588 7.29243 7.38623 7.69333 7.72375 7.83766 8.28450 8.91320 9.57320 10.50370 11.27455 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.005344 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.903733 B = 5238.015087 C = 6217.762893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.562 5.562 3 C 0.552 3.448 4 O -0.540 6.540 5 C -0.060 4.060 6 C -0.132 4.132 7 C 0.117 3.883 8 N -0.494 5.494 9 C 0.304 3.696 10 O -0.479 6.479 11 C -0.159 4.159 12 C 0.080 3.920 13 C 0.105 3.895 14 N -0.606 5.606 15 C -0.220 4.220 16 H 0.082 0.918 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.289 1.289 23 C 0.151 3.849 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.148 0.852 28 H 0.166 0.834 29 H 0.400 0.600 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.255 0.745 35 H 0.044 0.956 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 14.180 2.848 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.291 5.291 3 C 0.339 3.661 4 O -0.419 6.419 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.039 4.039 8 N -0.214 5.214 9 C 0.126 3.874 10 O -0.285 6.285 11 C -0.180 4.180 12 C -0.025 4.025 13 C -0.022 4.022 14 N -0.333 5.333 15 C -0.347 4.347 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.205 1.205 22 H -0.215 1.215 23 C 0.025 3.975 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.166 0.834 28 H 0.184 0.816 29 H 0.258 0.742 30 H 0.177 0.823 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.686 14.519 2.283 14.941 hybrid contribution -0.456 -1.260 0.687 1.506 sum 2.230 13.259 2.969 13.769 Atomic orbital electron populations 1.22332 0.78287 1.05441 1.01192 1.47278 1.07699 1.04596 1.69575 1.18175 0.86955 0.83275 0.77680 1.90751 1.13165 1.87122 1.50838 1.20323 0.94187 0.95084 0.97470 1.22248 1.01625 0.92519 0.98882 1.22474 0.88763 0.96947 0.95757 1.67005 1.12199 1.33168 1.09028 1.19022 0.85703 0.88675 0.94044 1.84820 1.23726 1.87688 1.32305 1.22874 0.94034 0.99610 1.01530 1.22817 0.95708 0.83102 1.00878 1.22833 0.91089 0.93493 0.94767 1.45875 1.14194 1.71189 1.02041 1.18924 0.90965 1.31520 0.93333 0.90066 1.24802 0.99052 1.00678 0.95629 1.69830 1.36742 1.50290 0.99624 0.86142 0.83716 0.78850 0.77320 1.21602 1.20453 1.21538 1.22441 0.92475 0.90531 0.92085 0.92639 0.92443 0.86363 0.83416 0.81645 0.74235 0.82308 0.88025 0.93936 0.93793 0.93457 0.93881 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 8.04 59.84 0.48 1.68 16 2 N -0.56 -9.92 3.12 -174.56 -0.54 -10.46 16 3 C 0.55 9.33 7.44 -12.18 -0.09 9.24 16 4 O -0.54 -10.34 16.43 5.36 0.09 -10.25 16 5 C -0.06 -0.84 5.34 -104.68 -0.56 -1.40 16 6 C -0.13 -1.57 9.72 -39.03 -0.38 -1.95 16 7 C 0.12 1.26 11.17 -17.61 -0.20 1.06 16 8 N -0.49 -6.33 10.36 -13.38 -0.14 -6.47 16 9 C 0.30 3.86 7.74 -17.16 -0.13 3.73 16 10 O -0.48 -5.32 13.56 -18.76 -0.25 -5.57 16 11 C -0.16 -2.07 7.61 -38.84 -0.30 -2.36 16 12 C 0.08 1.50 4.66 -67.68 -0.32 1.19 16 13 C 0.11 2.09 8.31 -8.50 -0.07 2.02 16 14 N -0.61 -14.29 2.47 -184.60 -0.46 -14.74 16 15 C -0.22 -5.69 10.18 -15.06 -0.15 -5.85 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -25.64 11.72 55.49 0.65 -24.99 16 19 Si 0.91 20.99 29.56 -169.99 -5.02 15.97 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.15 3.33 6.28 -8.37 -0.05 3.28 16 24 H 0.06 0.90 6.82 -51.93 -0.35 0.54 16 25 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 26 H 0.12 2.51 5.10 -51.93 -0.26 2.25 16 27 H 0.15 1.56 8.05 -52.48 -0.42 1.14 16 28 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.40 2.34 9.06 45.56 0.41 2.75 16 30 H 0.16 2.00 5.08 -52.49 -0.27 1.73 16 31 H 0.10 1.85 7.32 -51.93 -0.38 1.47 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.68 6.71 -51.93 -0.35 1.33 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -31.76 303.10 -6.13 -37.89 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.16 Total: 3.64 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -1.86 Total: 10.41 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.49 Total: -56.66 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.17 Total: -15.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.76 -6.13 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042607011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.938 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds