Wall clock time and date at job start Mon Mar 30 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99937 * 2 1 4 4 O 1.21511 * 120.00127 * 176.36491 * 3 2 1 5 5 C 1.48165 * 119.99736 * 356.36328 * 3 2 1 6 6 C 1.39965 * 120.89566 * 215.34555 * 5 3 2 7 7 C 1.37977 * 119.13956 * 179.75454 * 6 5 3 8 8 N 1.31912 * 120.96983 * 0.52999 * 7 6 5 9 9 C 1.32167 * 121.97499 * 359.72207 * 8 7 6 10 10 O 1.35685 * 119.62496 * 179.97438 * 9 8 7 11 11 C 1.38899 * 120.75519 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00432 * 180.02562 * 2 1 3 13 13 C 1.53493 * 114.20467 * 299.99427 * 12 2 1 14 14 N 1.47071 * 87.98544 * 87.71656 * 13 12 2 15 15 C 1.36932 * 136.06045 * 207.08348 * 14 13 12 16 16 H 1.07998 * 119.99797 * 5.06928 * 15 14 13 17 17 C 1.38813 * 120.00078 * 185.06146 * 15 14 13 18 18 N 1.31615 * 119.99898 * 5.05322 * 17 15 14 19 19 Si 1.86801 * 119.99969 * 185.04941 * 17 15 14 20 20 H 1.48499 * 109.47305 * 265.00136 * 19 17 15 21 21 H 1.48505 * 109.47117 * 25.00497 * 19 17 15 22 22 H 1.48500 * 109.46954 * 145.00185 * 19 17 15 23 23 C 1.47075 * 87.88142 * 27.34124 * 14 13 12 24 24 H 1.09002 * 109.46999 * 275.25946 * 1 2 3 25 25 H 1.08998 * 109.47607 * 35.25675 * 1 2 3 26 26 H 1.08999 * 109.46676 * 155.26202 * 1 2 3 27 27 H 1.08007 * 120.42627 * 359.97438 * 6 5 3 28 28 H 1.07998 * 119.51385 * 180.27540 * 7 6 5 29 29 H 0.96704 * 113.99732 * 270.02574 * 10 9 8 30 30 H 1.07990 * 120.52549 * 179.97438 * 11 9 8 31 31 H 1.09000 * 113.28251 * 166.93166 * 12 2 1 32 32 H 1.09006 * 113.46933 * 332.93861 * 13 12 2 33 33 H 1.08997 * 113.47093 * 202.49779 * 13 12 2 34 34 H 0.97005 * 120.00101 * 179.97438 * 18 17 15 35 35 H 1.09002 * 113.46383 * 87.44345 * 23 14 13 36 36 H 1.09000 * 113.46237 * 217.87786 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3522 1.1684 0.0667 5 6 1.4002 2.4491 -0.0814 6 6 1.9276 3.5392 -0.7832 7 6 1.2065 4.7142 -0.8400 8 7 0.0391 4.8240 -0.2358 9 6 -0.4950 3.8231 0.4422 10 8 -1.6989 3.9887 1.0458 11 6 0.1625 2.6038 0.5448 12 6 2.1976 -1.2687 -0.0006 13 6 1.9062 -2.1642 1.2115 14 7 0.7774 -2.7295 0.4570 15 6 -0.4239 -3.3093 0.7666 16 1 -0.7514 -3.3569 1.7947 17 6 -1.2206 -3.8357 -0.2408 18 7 -0.7789 -3.8675 -1.4802 19 14 -2.9197 -4.4989 0.1626 20 1 -2.8399 -5.9658 0.3793 21 1 -3.4273 -3.8433 1.3946 22 1 -3.8427 -4.2147 -0.9655 23 6 1.5096 -2.4039 -0.7763 24 1 -0.3633 0.0942 1.0234 25 1 -0.3634 0.8391 -0.5932 26 1 -0.3632 -0.9334 -0.4301 27 1 2.8850 3.4604 -1.2770 28 1 1.6057 5.5577 -1.3836 29 1 -1.6418 4.3169 1.9537 30 1 -0.2772 1.7886 1.1000 31 1 3.2576 -1.1539 -0.2269 32 1 1.6008 -1.6086 2.0983 33 1 2.6959 -2.8866 1.4174 34 1 -1.3356 -4.2357 -2.1842 35 1 2.1947 -3.1897 -1.0945 36 1 0.8662 -2.0527 -1.5830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042607011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:12 Heat of formation + Delta-G solvation = 24.701067 kcal Electronic energy + Delta-G solvation = -21590.935226 eV Core-core repulsion = 18270.847660 eV Total energy + Delta-G solvation = -3320.087566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05998 -40.90777 -39.39191 -37.93873 -35.96450 -34.31946 -33.36564 -31.35486 -29.82061 -28.01904 -26.41245 -26.32790 -24.62006 -24.37249 -22.17075 -20.35065 -19.45603 -18.74775 -18.27781 -17.88557 -17.28165 -16.99348 -16.77790 -16.41624 -16.24062 -15.61234 -15.32643 -14.99642 -14.55138 -14.40167 -14.16332 -13.99014 -13.33183 -13.27765 -13.14898 -12.80251 -12.77251 -12.51069 -12.46649 -12.01035 -11.76395 -11.48117 -11.35347 -10.98056 -10.88235 -10.46283 -9.99461 -9.64131 -8.93451 -7.91378 -5.23425 -0.36959 -0.07257 1.48345 1.49469 1.54859 1.58000 1.82293 2.44126 2.47467 2.75940 3.19296 3.32286 3.44618 3.68659 3.73694 3.87571 3.91356 4.24769 4.34346 4.37570 4.46504 4.51869 4.64545 4.70916 4.78425 4.86417 4.96852 4.99262 5.17449 5.25419 5.41866 5.45355 5.60253 5.87406 6.33202 6.57299 6.83385 6.90309 6.91458 7.59657 8.58509 9.26644 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.005344 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.903733 B = 5238.015087 C = 6217.762893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.568 5.568 3 C 0.557 3.443 4 O -0.564 6.564 5 C -0.076 4.076 6 C -0.130 4.130 7 C 0.129 3.871 8 N -0.509 5.509 9 C 0.304 3.696 10 O -0.488 6.488 11 C -0.162 4.162 12 C 0.101 3.899 13 C 0.109 3.891 14 N -0.626 5.626 15 C -0.220 4.220 16 H 0.085 0.915 17 C -0.056 4.056 18 N -0.950 5.950 19 Si 0.970 3.030 20 H -0.293 1.293 21 H -0.265 1.265 22 H -0.296 1.296 23 C 0.153 3.847 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.205 0.795 29 H 0.422 0.578 30 H 0.159 0.841 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.248 0.752 35 H 0.035 0.965 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 15.997 3.643 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.297 5.297 3 C 0.346 3.654 4 O -0.444 6.444 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.028 4.028 8 N -0.229 5.229 9 C 0.126 3.874 10 O -0.298 6.298 11 C -0.184 4.184 12 C -0.005 4.005 13 C -0.017 4.017 14 N -0.352 5.352 15 C -0.348 4.348 16 H 0.103 0.897 17 C -0.250 4.250 18 N -0.599 5.599 19 Si 0.799 3.201 20 H -0.220 1.220 21 H -0.190 1.190 22 H -0.223 1.223 23 C 0.026 3.974 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.178 0.822 28 H 0.222 0.778 29 H 0.283 0.717 30 H 0.177 0.823 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.657 16.363 3.131 16.870 hybrid contribution -0.399 -1.733 0.468 1.839 sum 2.258 14.630 3.599 15.234 Atomic orbital electron populations 1.22157 0.78026 1.03892 1.01730 1.47314 1.07817 1.04561 1.70032 1.18533 0.86737 0.83739 0.76431 1.90732 1.14255 1.87548 1.51829 1.20182 0.94806 0.94292 0.99447 1.22464 1.02163 0.92164 0.98308 1.23080 0.87698 0.97469 0.94529 1.67124 1.13077 1.33259 1.09455 1.19074 0.85859 0.88498 0.94001 1.84767 1.23120 1.87896 1.34013 1.22800 0.93826 0.99972 1.01787 1.22529 0.95945 0.82938 0.99043 1.22928 0.90081 0.93611 0.95083 1.46046 1.14715 1.70989 1.03464 1.19213 0.91933 1.30219 0.93406 0.89719 1.25481 1.02214 1.01727 0.95553 1.69993 1.37729 1.51805 1.00363 0.85187 0.79901 0.77813 0.77201 1.22020 1.18972 1.22283 1.22347 0.91971 0.91629 0.91407 0.91631 0.90802 0.90323 0.82167 0.77816 0.71706 0.82339 0.86889 0.93149 0.92419 0.94257 0.94758 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.87 8.04 127.77 1.03 3.90 16 2 N -0.57 -19.69 3.12 -824.47 -2.57 -22.26 16 3 C 0.56 18.17 7.44 86.88 0.65 18.82 16 4 O -0.56 -20.88 16.43 -3.75 -0.06 -20.94 16 5 C -0.08 -2.02 5.34 -19.90 -0.11 -2.13 16 6 C -0.13 -2.78 9.72 22.63 0.22 -2.56 16 7 C 0.13 2.35 11.17 84.62 0.94 3.29 16 8 N -0.51 -11.67 10.36 -309.14 -3.20 -14.88 16 9 C 0.30 7.08 7.74 84.80 0.66 7.73 16 10 O -0.49 -9.84 13.56 -90.04 -1.22 -11.06 16 11 C -0.16 -3.95 7.61 22.75 0.17 -3.78 16 12 C 0.10 3.75 4.66 45.55 0.21 3.96 16 13 C 0.11 4.24 8.31 83.18 0.69 4.93 16 14 N -0.63 -29.60 2.47 -737.96 -1.82 -31.42 16 15 C -0.22 -11.38 10.18 84.03 0.86 -10.53 16 16 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.06 -2.99 5.50 84.86 0.47 -2.53 16 18 N -0.95 -54.40 11.72 21.65 0.25 -54.15 16 19 Si 0.97 43.48 29.56 68.60 2.03 45.51 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 23 C 0.15 6.87 6.28 83.27 0.52 7.40 16 24 H 0.07 2.07 6.82 -2.39 -0.02 2.05 16 25 H 0.07 2.25 5.83 -2.39 -0.01 2.23 16 26 H 0.08 3.40 5.10 -2.39 -0.01 3.39 16 27 H 0.16 2.97 8.05 -2.91 -0.02 2.95 16 28 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.42 4.01 9.06 -74.05 -0.67 3.33 16 30 H 0.16 3.77 5.08 -2.92 -0.01 3.76 16 31 H 0.11 4.00 7.32 -2.39 -0.02 3.98 16 32 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 35 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 2.18 6.71 -2.39 -0.02 2.17 16 Total: -1.00 -67.78 303.10 0.18 -67.60 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.46 Total: 13.09 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 6.31 Total: 28.51 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -7.34 Total: -122.71 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.28 Total: -32.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -67.78 0.18 -67.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042607011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.301 kcal (2) G-P(sol) polarization free energy of solvation -67.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds