Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47142 * 2 1 4 4 C 1.36776 * 119.99750 * 262.35679 * 3 2 1 5 5 H 1.08003 * 119.99756 * 195.97406 * 4 3 2 6 6 C 1.39110 * 120.00191 * 15.96111 * 4 3 2 7 7 N 1.31320 * 119.99902 * 19.84545 * 6 4 3 8 8 Si 1.86798 * 120.00325 * 199.83530 * 6 4 3 9 9 H 1.48498 * 109.46934 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46840 * 120.00450 * 8 6 4 11 11 H 1.48500 * 109.47328 * 240.00611 * 8 6 4 12 12 C 1.34780 * 120.00018 * 82.35053 * 3 2 1 13 13 O 1.21561 * 119.99540 * 182.68969 * 12 3 2 14 14 C 1.48059 * 120.00254 * 2.69308 * 12 3 2 15 15 C 1.39718 * 119.66389 * 172.91677 * 14 12 3 16 16 C 1.38494 * 119.24163 * 179.97438 * 15 14 12 17 17 C 1.38621 * 118.56434 * 359.75165 * 16 15 14 18 18 C 1.39572 * 119.26438 * 0.51100 * 17 16 15 19 19 C 1.48219 * 119.65229 * 179.75448 * 18 17 16 20 20 O 1.21516 * 119.99780 * 359.72324 * 19 18 17 21 21 N 1.34780 * 120.00409 * 179.72681 * 19 18 17 22 22 C 1.46495 * 120.00139 * 179.97438 * 21 19 18 23 23 N 1.32381 * 120.69849 * 359.47545 * 18 17 16 24 24 H 1.09008 * 109.46923 * 299.99950 * 1 2 3 25 25 H 1.08999 * 109.47201 * 60.00548 * 1 2 3 26 26 H 1.09007 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47500 * 239.99774 * 2 1 3 28 28 H 1.09009 * 109.47223 * 119.99603 * 2 1 3 29 29 H 0.96996 * 120.00584 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.37807 * 359.97176 * 15 14 12 31 31 H 1.08000 * 120.71737 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.37255 * 180.24339 * 17 16 15 33 33 H 0.97000 * 119.99606 * 359.97438 * 21 19 18 34 34 H 1.08997 * 109.47220 * 60.00039 * 22 21 19 35 35 H 1.09001 * 109.47224 * 179.97438 * 22 21 19 36 36 H 1.09003 * 109.47285 * 300.00127 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3948 1.9734 -1.1740 5 1 2.9872 2.8764 -1.1577 6 6 2.0150 1.4127 -2.3891 7 7 1.0041 0.5758 -2.4386 8 14 2.9425 1.8501 -3.9504 9 1 4.0315 2.8067 -3.6275 10 1 3.5249 0.6186 -4.5416 11 1 2.0087 2.4725 -4.9230 12 6 2.0965 2.0684 1.1568 13 8 2.4551 3.2299 1.1507 14 6 1.7456 1.4086 2.4350 15 6 1.9695 2.0760 3.6419 16 6 1.6375 1.4508 4.8323 17 6 1.0869 0.1797 4.7824 18 6 0.8948 -0.4324 3.5428 19 6 0.3117 -1.7937 3.4797 20 8 0.0084 -2.3728 4.5040 21 7 0.1180 -2.3892 2.2862 22 6 -0.4577 -3.7348 2.2239 23 7 1.2227 0.1921 2.4226 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.7390 0.1850 -3.2858 30 1 2.3966 3.0680 3.6465 31 1 1.8007 1.9445 5.7789 32 1 0.8135 -0.3332 5.6927 33 1 0.3599 -1.9268 1.4686 34 1 -1.4484 -3.7276 2.6784 35 1 -0.5383 -4.0477 1.1829 36 1 0.1847 -4.4303 2.7641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116278957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = 1.275320 kcal Electronic energy + Delta-G solvation = -22081.170655 eV Core-core repulsion = 18760.067272 eV Total energy + Delta-G solvation = -3321.103383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53954 -39.02606 -37.80309 -35.29722 -34.54063 -32.66514 -31.72121 -31.02514 -29.47600 -27.06362 -25.64494 -23.89002 -23.43222 -22.12641 -20.72482 -19.74201 -17.79023 -17.21638 -16.59892 -15.85283 -15.76302 -15.26842 -15.01267 -14.87910 -14.21077 -14.11134 -13.88209 -13.27785 -13.24145 -12.92254 -12.59724 -12.47277 -12.20497 -11.90977 -11.78717 -11.28536 -11.18736 -10.82591 -10.46308 -10.36137 -10.25665 -10.06257 -9.52460 -9.19443 -9.09217 -8.95639 -8.77552 -8.43482 -7.79126 -6.51690 -3.95167 0.84563 1.28245 2.80690 3.06691 3.15939 3.22800 3.28496 3.70640 3.94590 4.28645 4.42530 4.66123 4.94841 5.03239 5.23973 5.25699 5.30224 5.38057 5.51711 5.73778 5.80886 5.86024 6.18980 6.32306 6.43022 6.46441 6.63975 6.72166 6.77310 6.95405 7.25176 7.31074 7.51134 7.78793 7.91079 7.99971 8.29975 8.38697 9.00962 9.24064 9.86243 10.42463 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.006591 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.841898 B = 4247.495819 C = 5528.400650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.117 3.883 3 N -0.397 5.397 4 C -0.298 4.298 5 H 0.108 0.892 6 C 0.033 3.967 7 N -0.847 5.847 8 Si 0.928 3.072 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.463 3.537 13 O -0.594 6.594 14 C 0.114 3.886 15 C -0.106 4.106 16 C -0.091 4.091 17 C -0.119 4.119 18 C 0.060 3.940 19 C 0.576 3.424 20 O -0.544 6.544 21 N -0.719 5.719 22 C 0.086 3.914 23 N -0.428 5.428 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.271 0.729 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 -6.209 6.900 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.007 4.007 3 N -0.111 5.111 4 C -0.427 4.427 5 H 0.126 0.874 6 C -0.173 4.173 7 N -0.484 5.484 8 Si 0.754 3.246 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.252 3.748 13 O -0.481 6.481 14 C -0.027 4.027 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.141 4.141 18 C -0.079 4.079 19 C 0.361 3.639 20 O -0.421 6.421 21 N -0.373 5.373 22 C -0.058 4.058 23 N -0.144 5.144 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.717 -6.657 6.594 9.526 hybrid contribution 0.431 0.609 -0.378 0.837 sum -1.286 -6.047 6.216 8.767 Atomic orbital electron populations 1.22080 0.96403 0.98960 1.02178 1.21820 0.94975 0.82931 1.00925 1.43786 1.50428 1.11384 1.05458 1.19955 1.29852 1.10973 0.81932 0.87428 1.25430 0.95446 0.96736 0.99704 1.70055 1.21963 1.29344 1.27069 0.85839 0.79745 0.78622 0.80437 1.18957 1.20367 1.20539 1.17375 0.88513 0.86251 0.82671 1.90611 1.55480 1.16234 1.85789 1.21758 0.95703 0.89556 0.95651 1.22275 0.97356 1.01447 0.91695 1.21515 0.97073 0.94386 0.98663 1.22044 0.98124 0.95420 0.98485 1.21164 1.00953 0.95397 0.90389 1.17961 0.77737 0.84502 0.83654 1.90735 1.52040 1.65034 1.34272 1.45965 1.63564 1.18193 1.09622 1.21581 0.98735 0.83089 1.02411 1.68403 1.09001 1.09003 1.27957 0.95168 0.88845 0.95230 0.90006 0.91147 0.91835 0.83464 0.84157 0.83997 0.74317 0.92147 0.90370 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.10 37.16 0.30 -2.54 16 2 C 0.12 2.55 4.61 -4.04 -0.02 2.53 16 3 N -0.40 -9.93 2.64 -115.81 -0.31 -10.23 16 4 C -0.30 -7.88 9.35 -15.02 -0.14 -8.02 16 5 H 0.11 2.99 7.37 -52.48 -0.39 2.60 16 6 C 0.03 0.80 4.93 -17.45 -0.09 0.71 16 7 N -0.85 -20.28 8.42 55.50 0.47 -19.81 16 8 Si 0.93 19.19 29.60 -169.99 -5.03 14.16 16 9 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 10 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 C 0.46 11.45 7.54 -12.23 -0.09 11.36 16 13 O -0.59 -16.27 15.99 5.31 0.08 -16.19 16 14 C 0.11 2.32 6.50 -83.03 -0.54 1.78 16 15 C -0.11 -1.81 9.63 -38.93 -0.38 -2.18 16 16 C -0.09 -1.25 10.16 -39.35 -0.40 -1.65 16 17 C -0.12 -1.76 9.63 -38.94 -0.38 -2.13 16 18 C 0.06 1.03 6.75 -83.03 -0.56 0.47 16 19 C 0.58 9.63 7.81 -12.16 -0.09 9.54 16 20 O -0.54 -9.86 16.32 5.35 0.09 -9.77 16 21 N -0.72 -10.61 5.70 -67.92 -0.39 -11.00 16 22 C 0.09 0.98 10.70 59.84 0.64 1.62 16 23 N -0.43 -8.05 3.49 -6.39 -0.02 -8.07 16 24 H 0.03 0.63 6.63 -51.92 -0.34 0.28 16 25 H 0.09 2.19 5.99 -51.93 -0.31 1.87 16 26 H 0.03 0.51 6.74 -51.93 -0.35 0.16 16 27 H 0.08 1.88 6.14 -51.93 -0.32 1.56 16 28 H 0.07 1.44 4.72 -51.95 -0.25 1.19 16 29 H 0.27 6.08 8.31 -40.82 -0.34 5.75 16 30 H 0.15 2.43 7.66 -52.48 -0.40 2.03 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 1.86 7.64 -52.49 -0.40 1.46 16 33 H 0.42 6.35 4.57 -40.82 -0.19 6.17 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -29.79 297.44 -6.13 -35.93 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -3.77 Total: 9.02 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.74 Total: 11.48 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.25 Total: -49.11 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.17 Total: -25.96 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.79 -6.13 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116278957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.201 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds